Result of FASTA (omim) for pF1KB8899
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8899, 233 aa
  1>>>pF1KB8899 233 - 233 aa - 233 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0891+/-0.000314; mu= 11.5251+/- 0.020
 mean_var=106.6396+/-21.997, 0's: 0 Z-trim(119.3): 262  B-trim: 1787 in 2/54
 Lambda= 0.124198
 statistics sampled from 32764 (33075) to 32764 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.388), width:  16
 Scan time:  7.030

The best scores are:                                      opt bits E(85289)
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 1616 299.5 3.3e-81
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  589 115.4 7.9e-26
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224)  589 115.4 7.9e-26
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  589 115.4 7.9e-26
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288)  589 115.5 9.6e-26
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153)  513 101.7 7.5e-22
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235)  513 101.8   1e-21
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270)  462 92.7 6.5e-19
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217)  455 91.4 1.3e-18
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  445 89.7 5.1e-18
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269)  435 87.9 1.8e-17
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230)  428 86.6 3.9e-17
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  422 85.6 9.1e-17
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  422 85.6 9.1e-17
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  421 85.4 9.9e-17
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  418 84.9 1.7e-16
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222)  413 83.9 2.4e-16
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242)  408 83.0 4.9e-16
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290)  388 79.5 6.7e-15
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243)  381 78.2 1.4e-14
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243)  381 78.2 1.4e-14
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289)  380 78.1 1.8e-14
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242)  370 76.2 5.4e-14
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106)  358 73.8 1.3e-13
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352)  338 70.6 3.8e-12
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260)  309 65.3 1.1e-10
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376)  306 64.9 2.2e-10
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  304 64.6 3.1e-10
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  304 64.6 3.1e-10
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  304 64.6 3.1e-10
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  304 64.6 3.1e-10
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  304 64.6 3.1e-10
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  304 64.6 3.1e-10
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  304 64.6 3.1e-10
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272)  301 63.9 3.1e-10
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250)  294 62.6   7e-10
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  295 62.9 7.1e-10
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  295 62.9 8.1e-10
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  295 62.9 8.1e-10
NP_059105 (OMIM: 605560) homeobox protein Hox-C10  ( 342)  294 62.7 8.9e-10
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430)  295 63.0 9.3e-10
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  295 63.0 9.4e-10
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  295 63.0 9.4e-10
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  295 63.0 9.4e-10
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  295 63.0 9.4e-10
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  295 63.0 9.4e-10
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  295 63.0 9.4e-10
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488)  295 63.0   1e-09
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283)  291 62.1 1.1e-09
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  295 63.1 1.2e-09


>>NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [Homo  (233 aa)
 initn: 1616 init1: 1616 opt: 1616  Z-score: 1579.0  bits: 299.5 E(85289): 3.3e-81
Smith-Waterman score: 1616; 100.0% identity (100.0% similar) in 233 aa overlap (1-233:1-233)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL
              130       140       150       160       170       180

              190       200       210       220       230   
pF1KB8 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
              190       200       210       220       230   

>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei  (224 aa)
 initn: 780 init1: 551 opt: 589  Z-score: 584.7  bits: 115.4 E(85289): 7.9e-26
Smith-Waterman score: 815; 57.2% identity (75.8% similar) in 236 aa overlap (1-233:1-224)

               10        20        30         40        50         
pF1KB8 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-DALRPFPASYGASSLPDKTYTSPCFYQ
       ::::::: ::: .: :::.:::::::::..:: : :: .:: :: .   :: ...  .: 
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
               10        20        30        40        50        60

      60        70          80        90       100       110       
pF1KB8 QSNSVLACNRASY-EYG-ASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSS
        ...  . .::.  .:: :  :: .:. :. . ::. .:  :     : :: . : : . 
XP_005 PAGG--GYGRAAPCDYGPAPAFYREKE-SACALSGADEQ--PP----FHPEPR-KSDCA-
                 70        80         90             100           

       120       130       140       150       160       170       
pF1KB8 GQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFN
        : :..  :  ..: ..:::::::::::: .. .:  :::::::::::::::::::::.:
XP_005 -QDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
      110       120       130       140       150       160        

       180       190       200       210       220       230   
pF1KB8 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
       ::::::::::::.:::::::::::::::::::::::.::....: :.:. : : .:
XP_005 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
      170       180       190       200       210       220    

>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo  (224 aa)
 initn: 780 init1: 551 opt: 589  Z-score: 584.7  bits: 115.4 E(85289): 7.9e-26
Smith-Waterman score: 815; 57.2% identity (75.8% similar) in 236 aa overlap (1-233:1-224)

               10        20        30         40        50         
pF1KB8 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-DALRPFPASYGASSLPDKTYTSPCFYQ
       ::::::: ::: .: :::.:::::::::..:: : :: .:: :: .   :: ...  .: 
NP_061 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
               10        20        30        40        50        60

      60        70          80        90       100       110       
pF1KB8 QSNSVLACNRASY-EYG-ASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSS
        ...  . .::.  .:: :  :: .:. :. . ::. .:  :     : :: . : : . 
NP_061 PAGG--GYGRAAPCDYGPAPAFYREKE-SACALSGADEQ--PP----FHPEPR-KSDCA-
                 70        80         90             100           

       120       130       140       150       160       170       
pF1KB8 GQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFN
        : :..  :  ..: ..:::::::::::: .. .:  :::::::::::::::::::::.:
NP_061 -QDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
      110       120       130       140       150       160        

       180       190       200       210       220       230   
pF1KB8 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
       ::::::::::::.:::::::::::::::::::::::.::....: :.:. : : .:
NP_061 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
      170       180       190       200       210       220    

>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei  (224 aa)
 initn: 780 init1: 551 opt: 589  Z-score: 584.7  bits: 115.4 E(85289): 7.9e-26
Smith-Waterman score: 815; 57.2% identity (75.8% similar) in 236 aa overlap (1-233:1-224)

               10        20        30         40        50         
pF1KB8 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-DALRPFPASYGASSLPDKTYTSPCFYQ
       ::::::: ::: .: :::.:::::::::..:: : :: .:: :: .   :: ...  .: 
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
               10        20        30        40        50        60

      60        70          80        90       100       110       
pF1KB8 QSNSVLACNRASY-EYG-ASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSS
        ...  . .::.  .:: :  :: .:. :. . ::. .:  :     : :: . : : . 
XP_005 PAGG--GYGRAAPCDYGPAPAFYREKE-SACALSGADEQ--PP----FHPEPR-KSDCA-
                 70        80         90             100           

       120       130       140       150       160       170       
pF1KB8 GQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFN
        : :..  :  ..: ..:::::::::::: .. .:  :::::::::::::::::::::.:
XP_005 -QDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
      110       120       130       140       150       160        

       180       190       200       210       220       230   
pF1KB8 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
       ::::::::::::.:::::::::::::::::::::::.::....: :.:. : : .:
XP_005 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
      170       180       190       200       210       220    

>>XP_011523029 (OMIM: 142961) PREDICTED: homeobox protei  (288 aa)
 initn: 764 init1: 551 opt: 589  Z-score: 583.2  bits: 115.5 E(85289): 9.6e-26
Smith-Waterman score: 815; 57.2% identity (75.8% similar) in 236 aa overlap (1-233:65-288)

                                             10        20        30
pF1KB8                               MSSYFVNPTFPGSLPSGQDSFLGQLPLYQA
                                     ::::::: ::: .: :::.:::::::::..
XP_011 GFNAARRSDYKTQQIINPAEQQRPRAPPLPMSSYFVNSTFPVTLASGQESFLGQLPLYSS
           40        50        60        70        80        90    

                40        50        60        70          80       
pF1KB8 GY-DALRPFPASYGASSLPDKTYTSPCFYQQSNSVLACNRASY-EYG-ASCFYSDKDLSG
       :: : :: .:: :: .   :: ...  .:  ...  . .::.  .:: :  :: .:. :.
XP_011 GYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGG--GYGRAAPCDYGPAPAFYREKE-SA
          100       110       120         130       140        150 

        90       100       110       120       130       140       
pF1KB8 ASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCA
        . ::. .:  :     : :: . : : .  : :..  :  ..: ..:::::::::::: 
XP_011 CALSGADEQ--PP----FHPEPR-KSDCA--QDKSVFGETEEQKCSTPVYPWMQRMNSCN
             160              170         180       190       200  

       150       160       170       180       190       200       
pF1KB8 GAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRR
       .. .:  :::::::::::::::::::::.:::::::::::::.:::::::::::::::::
XP_011 SSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRR
            210       220       230       240       250       260  

       210       220       230   
pF1KB8 MKWKKENKLINSTQPSGEDSEAKAGE
       ::::::.::....: :.:. : : .:
XP_011 MKWKKESKLLSASQLSAEEEEEKQAE
            270       280        

>>NP_710160 (OMIM: 142972) homeobox protein Hox-C6 isofo  (153 aa)
 initn: 521 init1: 488 opt: 513  Z-score: 513.3  bits: 101.7 E(85289): 7.5e-22
Smith-Waterman score: 513; 67.2% identity (81.0% similar) in 116 aa overlap (114-229:21-133)

            90       100       110       120       130       140   
pF1KB8 DLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRM
                                     : :: ::..      :.: .  .:::::::
NP_710           MLSNCRQNTLGHNTQTSIAQDFSSEQGRT---APQDQKASIQIYPWMQRM
                         10        20           30        40       

           150       160       170       180       190       200   
pF1KB8 NSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWF
       :: .:. ::.  ::::: :.::::::::::::::::::::::::::::::::::::::::
NP_710 NSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWF
        50        60        70        80        90       100       

           210       220       230                   
pF1KB8 QNRRMKWKKENKLINSTQPSGEDSEAKAGE                
       ::::::::::..: .. . .:  . :                    
NP_710 QNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
       110       120       130       140       150   

>>NP_004494 (OMIM: 142972) homeobox protein Hox-C6 isofo  (235 aa)
 initn: 714 init1: 488 opt: 513  Z-score: 510.8  bits: 101.8 E(85289): 1e-21
Smith-Waterman score: 696; 49.8% identity (71.6% similar) in 229 aa overlap (1-229:1-215)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ
       :.:::.::..   : .:::  : .. : ...:: .: : ..:::.   .. :..: .  :
NP_004 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAYDPVRHF-STYGAAVAQNRIYSTPFYSPQ
               10         20        30         40        50        

               70        80        90       100       110       120
pF1KB8 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG
        : :.. .:. :.::.. ::..::. .     . .:   :   . :  :    : :: ::
NP_004 ENVVFSSSRGPYDYGSNSFYQEKDMLS-----NCRQNTLGHNTQTSIAQ----DFSSEQG
       60        70        80             90       100             

              130       140       150       160       170       180
pF1KB8 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL
       ..  .   :.: .  .::::::::: .:. ::.  ::::: :.:::::::::::::::::
NP_004 RTAPQ---DQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYL
     110          120       130       140       150       160      

              190       200       210       220       230          
pF1KB8 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE       
       :::::::::::::::::::::::::::::::::..: .. . .:  . :           
NP_004 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKRE
        170       180       190       200       210       220      

NP_004 ETEEEKQKE
        230     

>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo  (270 aa)
 initn: 492 init1: 444 opt: 462  Z-score: 460.6  bits: 92.7 E(85289): 6.5e-19
Smith-Waterman score: 462; 45.3% identity (66.1% similar) in 192 aa overlap (36-216:71-256)

          10        20        30        40         50        60    
pF1KB8 VNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLP-DKTYTSPCFYQQSNSV
                                     : . ::  ::. : .  :..:    .: . 
NP_061 HSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAAS--ASAAPAEPRYSQPATSTHSPQP
               50        60        70          80        90        

             70        80            90           100       110    
pF1KB8 --LACNRASYEYGASCFYSDKDL----SGASP-SGS---GKQRGPGDYLHFSPEQQYKPD
         : :. ..   :..  .. :.     ::::  .::   ....: :     :  ..  : 
NP_061 DPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTA---SGAEEDAP-
      100       110       120       130       140          150     

          120       130       140       150       160       170    
pF1KB8 SSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEF
       .:: :..:  . .        .::::....     . : .:.:.: .:::::::::::::
NP_061 ASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEF
          160       170       180       190       200       210    

          180       190       200       210       220       230   
pF1KB8 HFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
       :::::::::::::::.::::.:::::::::::::::::.:::                 
NP_061 HFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP   
          220       230       240       250       260       270   

>>NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [Homo  (217 aa)
 initn: 439 init1: 392 opt: 455  Z-score: 455.1  bits: 91.4 E(85289): 1.3e-18
Smith-Waterman score: 456; 43.3% identity (62.3% similar) in 215 aa overlap (40-233:12-215)

      10        20        30        40        50        60         
pF1KB8 FPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQSNSVLACNR
                                     ..: :::   .....  : .:.. ..: : 
NP_004                    MSSLYYANTLFSKYPASS---SVFATGAFPEQTSCAFASNP
                                  10           20        30        

      70        80         90         100                    110   
pF1KB8 ASYEYGASCFYS-DKDLSGASPSGSGK--QRGPGDY------------LHFSP-EQQYK-
           :::.   :   ...:  :.:.:   : . : :            .: .: ::. . 
NP_004 QRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSG
       40        50        60        70        80        90        

               120        130       140       150       160        
pF1KB8 --P-DSSSGQG-KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTL
         : ::... : :  .:     . .  .::::.          :.  .::::::::::::
NP_004 VCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSS--------GTDRKRGRQTYTRYQTL
      100       110       120       130               140       150

      170       180       190       200       210       220        
pF1KB8 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSE
       :::::::.:::::::::::::..::::::::::::::::::::::::  .    . . .:
NP_004 ELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAE
              160       170       180       190       200       210

      230     
pF1KB8 AKAGE  
       :.  :  
NP_004 AEEEEEE
              

>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo  (255 aa)
 initn: 449 init1: 366 opt: 445  Z-score: 444.5  bits: 89.7 E(85289): 5.1e-18
Smith-Waterman score: 447; 39.1% identity (54.8% similar) in 248 aa overlap (1-231:3-230)

                      10        20         30        40        50  
pF1KB8   MSSYFVN-----PTFPGSLPSGQDSFLG-QLPLYQAGYDALRPFPASYGASSLPDKTY
         ::::.::     : ::      : ..:: :   : .:        .. ::.  :   :
NP_055 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGG--------GAQGADFQPPGLY
               10        20        30                40        50  

             60        70        80            90        100       
pF1KB8 TSPCFYQQSNSVLACNRASYEYGASCFYSDKDLS----GASPSGSGKQRG-PGDYLHFSP
         : : .:             .:.:     . :     :  :.: : . . ::.     :
NP_055 PRPDFGEQP------------FGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPP
             60                    70        80        90       100

       110           120       130       140         150       160 
pF1KB8 EQQYKP----DSSSGQGKALHDEGADRKYTSPVYPWMQRM--NSCAGAVYGSHGRRGRQT
            :     . : .       :.  :  . :::::...  ::      :.. .:.: .
NP_055 APPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTA
              110       120       130       140       150       160

             170       180       190       200       210       220 
pF1KB8 YTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQ
       ::: :.::::::::::::::::::::::..:::.:::::::::::::::::..:: :.  
NP_055 YTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKG
              170       180       190       200       210       220

             230                          
pF1KB8 PSGEDSEAKAGE                       
        :. .: ...                         
NP_055 RSSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
              230       240       250     




233 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:00:07 2016 done: Sat Nov  5 20:00:08 2016
 Total Scan time:  7.030 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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