GENSCAN 1.0	Date run:  4-Nov-116	Time: 22:45:24

Sequence gi568815578r:5015286_5219798 : 204513 bp : 45.21% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -     68     63    6                               1.05
 1.02 Term -  12973  12879   95  2  2   85   49    62 0.863  -0.01
 1.01 Init -  14509  14452   58  1  1   86   58    98 0.880   6.07
 1.00 Prom -  42710  42671   40                              -4.26

 2.00 Prom +  45659  45698   40                              -3.76
 2.01 Init +  53164  53217   54  0  0   86   70    85 0.771   7.78
 2.02 Intr +  55766  55849   84  1  0   29   58   106 0.335   1.72
 2.03 Intr +  68589  68672   84  2  0   94   95   -10 0.024   0.32
 2.04 Intr +  79591  79649   59  0  2   61  101    23 0.050  -1.42
 2.05 Term +  81948  82086  139  0  1   69   38   123 0.282   2.84
 2.06 PlyA +  83908  83913    6                               1.05

 3.07 PlyA -  84588  84583    6                               1.05
 3.06 Term -  85646  85506  141  2  0   91   42   260 0.999  19.63
 3.05 Intr -  91025  90903  123  2  0   94   86   105 0.978  11.68
 3.04 Intr -  94160  94047  114  2  0   46   99   138 0.651  11.34
 3.03 Intr -  97266  97167  100  2  1  101   17    37 0.582  -1.99
 3.02 Intr -  97655  97458  198  1  0   41   57   111 0.551   1.77
 3.01 Init -  97743  97676   68  0  2   49  107    97 0.986   6.34
 3.00 Prom -  98411  98372   40                              -8.76

 4.07 PlyA -  99695  99690    6                               1.05
 4.06 Term - 100077  99998   80  1  2  112   48    80 0.910   4.33
 4.05 Intr - 100287 100164  124  0  1  110   91    59 0.996   8.56
 4.04 Intr - 102379 102185  195  1  0   72   87   145 0.999  12.41
 4.03 Intr - 103392 103325   68  1  2   64   81    68 0.990   2.32
 4.02 Intr - 103581 103484   98  2  2   93  108    89 0.994  11.05
 4.01 Init - 104513 104293  221  2  2   90   99   417 0.987  41.10
 4.00 Prom - 117223 117184   40                              -3.26

 5.00 Prom + 127527 127566   40                              -3.46
 5.01 Init + 151123 151125    3  0  0   71  101     0 0.132  -0.40
 5.02 Intr + 154932 155099  168  2  0   72   43    80 0.185   2.04
 5.03 Intr + 158238 158374  137  2  2   78   86    87 0.645   6.87
 5.04 Intr + 159898 159994   97  1  1   79   97    16 0.666   1.61
 5.05 Intr + 161363 161460   98  1  2  106  107   102 0.988  12.71
 5.06 Intr + 163532 163671  140  2  2  111   57    45 0.900   3.81
 5.07 Intr + 167102 167160   59  0  2   77   58    55 0.842   0.00
 5.08 Intr + 167776 167858   83  0  2   87   85    35 0.899   1.54
 5.09 Intr + 169573 169660   88  1  1   99   94    45 0.957   6.17
 5.10 Intr + 170473 170541   69  0  0   95   82    76 0.992   7.08
 5.11 Intr + 171402 171554  153  2  0   93   71   269 0.997  25.97
 5.12 Intr + 173782 173901  120  0  0   87   19   161 0.994   9.79
 5.13 Intr + 174450 174553  104  2  2  101   80   166 0.995  16.07
 5.14 Term + 174817 174949  133  1  1   78   50   219 0.997  14.66
 5.15 PlyA + 175099 175104    6                              -0.45

 6.03 PlyA - 175577 175572    6                               1.05
 6.02 Term - 176547 176435  113  1  2   48   49   109 0.650   1.72
 6.01 Init - 179296 179215   82  1  1   96  110    13 0.546   5.43
 6.00 Prom - 179540 179501   40                              -5.56

 7.03 PlyA - 179564 179559    6                               1.05
 7.02 Term - 181346 181241  106  1  1   85   44   107 0.928   3.88
 7.01 Init - 184518 184349  170  0  2   59  110    66 0.537   4.91
 7.00 Prom - 184603 184564   40                              -2.46

 8.00 Prom + 184897 184936   40                              -6.46
 8.01 Sngl + 185265 185918  654  2  0   43   48   243 0.979  11.98
 8.02 PlyA + 185950 185955    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:5015286_5219798|GENSCAN_predicted_peptide_1|50_aa
MGFLHAGLAGLAGLELLTSDTATIRFLNLFPTFPAFLFHKAAIVILARSQ

>gi568815578r:5015286_5219798|GENSCAN_predicted_CDS_1|153_bp
atggggtttctccatgctggtctggctggtctggctggtctcgaactcctgacctcagac
acggcaaccatccgatttctcaatcttttccccacctttcccgcctttctattccacaaa
gccgccattgtcatcctggcccgttctcaatga

>gi568815578r:5015286_5219798|GENSCAN_predicted_peptide_2|139_aa
MVEGKGEAGTFFTAHQDRVNGNGVVVRGYSILKSQLIMSLDAPEMMVQGIHVQVCYVGKL
CIVGVWYTDYFVTQLQGQLVLLPRFLMVTSYFLITSQFLAEQKCLWYDHVKLNQETHQSG
NGSEISIICRTAEATGEGF

>gi568815578r:5015286_5219798|GENSCAN_predicted_CDS_2|420_bp
atggtggaaggcaaaggagaagcaggcaccttcttcacagcgcaccaggacagagtgaat
ggcaatggagtagttgtccgagggtactcaatactcaagagtcagctgatcatgtcctta
gatgcaccagaaatgatggttcagggaatacatgtgcaagtttgttacgtgggtaaatta
tgtatcgtgggggtttggtatactgactatttcgtcacccagctacagggacagctggtc
ttactgcccaggttcctcatggtcacctcctatttcctaatcacctcacaattcctggca
gaacagaagtgcctctggtatgaccacgtgaagctcaaccaagagacccaccagagtggc
aacggatctgaaatttccatcatatgcagaacagctgaagcaactggagagggtttttag

>gi568815578r:5015286_5219798|GENSCAN_predicted_peptide_3|247_aa
MQPWALPTVGELWVCGRPGAALRAGTEPSSRALGVSETALPAEIKLRVIRVGHSSPLAQL
ASFQKPVLFVLRLNSRRFLFLSLARSEDGILFAKSKHSSPLSLTPLRCIVLMRMYEQLMS
GDLCQRVMMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLF
LIGAFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYD
DIPDFDD

>gi568815578r:5015286_5219798|GENSCAN_predicted_CDS_3|744_bp
atgcaaccttgggcgctgccaaccgtgggcgagctctgggtgtgcgggcggcctggcgcg
gcgctccgggcggggacagaaccgtcctctcgggctctgggcgtgtccgagaccgcgctc
cccgccgaaatcaagctccgagtcatccgtgtggggcattcgtcccccctggcacagttg
gcctctttccagaagcccgttttgtttgttttacgtctaaattcgcgtcggttcttattt
ctctccctggcaaggtctgaagacggaatcctctttgccaagagtaaacattcgtctccc
ctctccctcacgcccctgcgatgtattgttttgatgcggatgtatgaacagttaatgtca
ggggacctgtgtcagcgtgttatgatgccgtcccgtaccaacctggctactggaatcccc
agtagtaaagtgaaatattcaaggctctccagcacagacgatggctacattgaccttcag
tttaagaaaacccctcctaagatcccttataaggccatcgcacttgccactgtgctgttt
ttgattggcgcctttctcattattataggctccctcctgctgtcaggctacatcagcaaa
gggggggcagaccgggccgttccagtgctgatcattggcattctggtgttcctacccgga
ttttaccacctgcgcatcgcttactatgcatccaaaggctaccgtggttactcctatgat
gacattccagactttgatgactag

>gi568815578r:5015286_5219798|GENSCAN_predicted_peptide_4|261_aa
MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY
RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMD
LDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNI
KLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK
IADMGHLKYYLAPKIEDEEGS

>gi568815578r:5015286_5219798|GENSCAN_predicted_CDS_4|786_bp
atgttcgaggcgcgcctggtccagggctccatcctcaagaaggtgttggaggcactcaag
gacctcatcaacgaggcctgctgggatattagctccagcggtgtaaacctgcagagcatg
gactcgtcccacgtctctttggtgcagctcaccctgcggtctgagggcttcgacacctac
cgctgcgaccgcaacctggccatgggcgtgaacctcaccagtatgtccaaaatactaaaa
tgcgccggcaatgaagatatcattacactaagggccgaagataacgcggataccttggcg
ctagtatttgaagcaccaaaccaggagaaagtttcagactatgaaatgaagttgatggat
ttagatgttgaacaacttggaattccagaacaggagtacagctgtgtagtaaagatgcct
tctggtgaatttgcacgtatatgccgagatctcagccatattggagatgctgttgtaatt
tcctgtgcaaaagacggagtgaaattttctgcaagtggagaacttggaaatggaaacatt
aaattgtcacagacaagtaatgtcgataaagaggaggaagctgttaccatagagatgaat
gaaccagttcaactaacttttgcactgaggtacctgaacttctttacaaaagccactcca
ctctcttcaacggtgacactcagtatgtctgcagatgtaccccttgttgtagagtataaa
attgcggatatgggacacttaaaatactacttggctcccaagatcgaggatgaagaagga
tcttag

>gi568815578r:5015286_5219798|GENSCAN_predicted_peptide_5|483_aa
MKVFLDISPPRCAQRSKLMNVFSMYHLSCGKEHGFQVPACFQTLCGSCRWHSASFSGESE
SEAKVDGETASDSESRAESAPLPVSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAF
FFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSYDLPWFRTLSWYFLLCVNYFFYG
ETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIGFCMFVLSLVKKHYRLQFYMFGWTHV
TLLIVVTQSHLVIHNLFEGMIWFIVPISCVICNDIMAYMFGFFFGRTPLIKLSPKKTWEG
FIGGFFATVVFGLLLSYVMSGYRCFVCPVEYNNDTNSFTVDCEPSDLFRLQEYNIPGVIQ
SVIGWKTVRMYPFQIHSIALSTFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDR
FDCQYLMATFVNVYIASFIRGPNPSKLIQQFLTLRPDQQLHIFNTLRSHLIDKGMLTSTT
EDE

>gi568815578r:5015286_5219798|GENSCAN_predicted_CDS_5|1452_bp
atgaaagtttttcttgacatctccccacctcgctgtgcccagaggagcaaactgatgaat
gtgttcagcatgtaccacctttcttgtgggaaggagcatgggttccaggtccctgcctgc
ttccagaccctctgtggaagctgccgctggcactcagcttccttttccggggagtcagag
tcagaagcaaaggtagatggagagactgcatcggacagtgagagccgggcagaatccgca
cccctgccagtctctgcagatgataccccggaggtcctcaatagggccctttccaacttg
tcttcaagatggaagaactggtgggtgagaggcatcctgactttggccatgattgcattt
ttcttcatcatcatttacctgggaccaatggttttgatgataatcgtgatgtgcgttcag
attaagtgtttccatgagataatcactattggctacaacgtctaccactcatatgatctg
ccctggttcaggacgctcagctggtactttctcctgtgtgtaaactatttcttctatggt
gagacagtgacggattacttcttcaccctggtccagagagaagagcctttgcggattctc
agtaaataccaccggttcatttcctttactctctatctaataggattctgcatgtttgta
ctgagtctggtcaagaagcattatcgactgcagttctacatgtttggctggacccatgtg
acattgctgattgttgtaacacagtcacatcttgttatccacaacctatttgaaggaatg
atctggttcattgtccccatatcttgtgtgatctgtaatgacatcatggcctatatgttt
ggctttttctttggtcggaccccactcatcaagctgtccccgaagaagacctgggaaggc
ttcattgggggcttctttgctactgtggtgtttggccttctgctgtcctatgtgatgtcc
gggtacagatgctttgtctgccctgtggagtacaacaatgacaccaacagcttcactgtg
gactgtgagccctcggacctgtttcgcctgcaggagtacaacattcctggggtgatccag
tcagtcattggctggaaaacggtccggatgtaccccttccagattcacagcatcgctctc
tccacctttgcctcgctcattggcccctttggaggattcttcgcaagtggattcaaacga
gcctttaaaatcaaagactttgccaataccattcctggccatggaggcatcatggatcgc
tttgactgccagtatctgatggccacctttgtcaatgtatacatcgccagttttatcaga
ggccctaacccaagcaaactgattcagcagttcctgactttacggccagatcagcagctc
cacatcttcaacacgctgcggtctcatctgatcgacaaagggatgctgacatccaccaca
gaggacgagtag

>gi568815578r:5015286_5219798|GENSCAN_predicted_peptide_6|64_aa
MVPIQTGDSLNQETAPDENSLHPPERPGALDLNKRSHEAEMEIKVQRKEAASAPHTYGKS
LKDV

>gi568815578r:5015286_5219798|GENSCAN_predicted_CDS_6|195_bp
atggtccctatacaaacaggtgacagccttaatcaagagacagccccagatgagaacagc
ctccatccacctgagaggccaggggccttggacctgaataagagaagccacgaggctgaa
atggaaataaaagttcagcggaaagaagccgcttcagccccacacacatatgggaagtca
ctcaaggatgtgtga

>gi568815578r:5015286_5219798|GENSCAN_predicted_peptide_7|91_aa
MIDWIKKMWHIYTVEYHAAIKKDEFMSFVGTWMKLETIILSKLSQEQKTKHRMFSRRKAS
IQEPSAGVKKRHPNCEDRGGYVDDYRQTQFH

>gi568815578r:5015286_5219798|GENSCAN_predicted_CDS_7|276_bp
atgatagactggattaagaaaatgtggcacatatacaccgtggaataccacgcagccata
aaaaaggatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctc
agcaaactatcgcaagaacaaaaaaccaaacaccgcatgttctcacgcagaaaagccagc
atacaagaacctagcgcaggtgtcaaaaaaaggcatccaaactgcgaggacagaggtggc
tatgtggatgattatcggcaaacacagtttcactag

>gi568815578r:5015286_5219798|GENSCAN_predicted_peptide_8|217_aa
MNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGSFNIRKSINVIQYINRTNEKNHM
IISIDAEKAFDKIQQCFMLKTLNKLGIDGMYLKIIRAIYDKPTASIILNGQKLEAFPLKT
GTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLRKEEVKLSLFADDMIVYLENPIVSA
QNLLKLIGNFSKVSGYKINVQKSQAFLYTNNRQTAKS

>gi568815578r:5015286_5219798|GENSCAN_predicted_CDS_8|654_bp
atgaacatcgatgcaaaaatcctcaataaaatactggcaaaccgaatccagcagcacatc
aaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctcattcaac
atacgcaaatcaataaatgtaatccagtatataaacagaaccaacgaaaaaaaccatatg
attatctcaatagatgcagaaaaggcctttgacaaaattcaacaatgcttcatgctaaaa
acgctcaataaattaggtattgatgggatgtacctcaaaataataagagctatctatgac
aaacccacagccagtatcatactgaatgggcaaaaactggaagcattccctttgaaaact
ggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctg
gccagggcaatcaggcaggagaaagaaataaagggtattcagttgagaaaagaggaagtc
aaattgtccctctttgcagatgacatgattgtgtatctagaaaaccccatcgtctcagcc
caaaatctccttaagctgataggcaacttcagcaaagtctcaggatacaaaatcaatgtg
caaaaatcacaagcattcttatacaccaataacagacaaacagccaaatcatga