GENSCAN 1.0	Date run:  3-Nov-116	Time: 03:01:10

Sequence gi568815576f:44083330_44306423 : 223094 bp : 50.98% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    438    656  219  2  0   76  110    76 0.516   5.26
 1.02 Term +   7011   7094   84  2  0  102   45    52 0.201  -0.05
 1.03 PlyA +   7974   7979    6                              -0.45

 2.00 Prom +   8750   8789   40                              -3.26
 2.01 Init +   9440   9620  181  1  1   90   77    98 0.837   8.44
 2.02 Intr +  10599  10688   90  1  0   91   60   161 0.985  13.57
 2.03 Intr +  14429  14464   36  0  0  109  103     4 0.533   2.23
 2.04 Intr +  16724  16794   71  0  2  108  116   119 0.542  15.60
 2.05 Intr +  20191  20280   90  0  0   98   64    21 0.226   0.89
 2.06 Intr +  21854  21940   87  1  0   91  115    24 0.379   5.57
 2.07 Intr +  35709  35811  103  2  1  102   92   228 0.996  24.35
 2.08 Intr +  46045  46149  105  2  0   48   56    87 0.011   1.69
 2.09 Intr +  48158  48298  141  0  0  122   74   176 0.880  19.92
 2.10 Intr +  49565  49680  116  0  2  110  100   167 0.998  20.27
 2.11 Intr +  56795  56814   20  1  2  128  123    24 0.594   5.31
 2.12 Intr +  62052  62095   44  0  2  156   75    -3 0.743   3.08
 2.13 Intr +  64532  64593   62  0  2   76  105   171 0.995  16.05
 2.14 Intr +  68154  68222   69  2  0   90   91   130 0.968  12.88
 2.15 Intr +  69170  69283  114  1  0   44   82    44 0.342   0.04
 2.16 Intr +  74653  74754  102  0  0   38   95   126 0.636   8.67
 2.17 Intr +  80529  80601   73  2  1  139   90   115 0.613  15.78
 2.18 Intr +  81317  81585  269  0  2   57  -11   113 0.192  -4.45
 2.19 Intr +  84767  84944  178  1  1   44  131    62 0.423   5.59
 2.20 Term +  85273  85349   77  2  2  103   49   102 0.958   5.80
 2.21 PlyA +  85871  85876    6                               1.05

 3.00 Prom +  93585  93624   40                              -4.16
 3.01 Init +  94772  94782   11  1  2   96   74    10 0.146   0.42
 3.02 Intr +  99913 100079  167  1  2  122   93   152 0.856  18.70
 3.03 Intr + 102479 102543   65  0  2   84   87    78 0.995   5.74
 3.04 Intr + 104447 104549  103  1  1   27   94   131 0.416   7.35
 3.05 Intr + 105785 105925  141  0  0  105   51   295 0.808  27.82
 3.06 Intr + 107222 107337  116  0  2  137   54   173 0.259  18.97
 3.07 Intr + 113018 113086   69  1  0   61   91   128 0.998   9.78
 3.08 Intr + 115292 115393  102  1  0   79  115    71 0.997   9.27
 3.09 Intr + 122428 122500   73  0  1   48  113   171 0.950  14.58
 3.10 Term + 122988 123097  110  1  2  136   46   122 0.998  11.47
 3.11 PlyA + 123304 123309    6                               1.05

 4.00 Prom + 129749 129788   40                              -4.76
 4.01 Sngl + 130052 130768  717  1  0   20   42   396 0.802  24.43
 4.02 PlyA + 131587 131592    6                               1.05

 5.03 PlyA - 131921 131916    6                               1.05
 5.02 Term - 141106 140901  206  2  2   74   46    90 0.644   0.93
 5.01 Init - 142459 142384   76  1  1   66   55    86 0.421   4.35
 5.00 Prom - 149267 149228   40                              -3.56

 6.00 Prom + 160392 160431   40                              -3.16
 6.01 Init + 162718 162769   52  0  1   70   80    87 0.064   5.44
 6.02 Intr + 177036 177142  107  1  2   58   63   104 0.497   4.83
 6.03 Intr + 178248 178419  172  2  1  103   86    12 0.751   2.02
 6.04 Intr + 180580 180744  165  2  0   12   62   157 0.549   5.43
 6.05 Intr + 186897 186979   83  1  2   58   99    68 0.300   4.26
 6.06 Term + 193268 193390  123  1  0   38   55   111 0.262   1.18
 6.07 PlyA + 195037 195042    6                               1.05

 7.08 PlyA - 195054 195049    6                              -3.94
 7.07 Term - 195685 195453  233  2  2   44   42   137 0.252   1.34
 7.06 Intr - 196129 195987  143  0  2   70  -17   123 0.323  -0.00
 7.05 Intr - 202416 202099  318  2  0  121  105   241 0.734  24.17
 7.04 Intr - 213556 213343  214  2  1   73   89   293 0.051  25.67
 7.03 Intr - 215600 215511   90  0  0   34   88    57 0.472   0.27
 7.02 Intr - 216164 216084   81  0  0   89  100    33 0.888   4.21
 7.01 Intr - 217648 217550   99  2  0   66   98    96 0.927   8.48

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  80342  80473  132  1  0   83   25   166 0.803   7.94
S.002 Intr + 112826 112884   59  0  2   51   75    87 0.845   2.30
S.003 Term + 210538 210758  221  2  2   97   48   160 0.962  10.10
S.004 Term - 213556 213339  218  2  2   73   48   306 0.947  22.41


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576f:44083330_44306423|GENSCAN_predicted_peptide_1|100_aa
MKVLRFTLELVGAMGCTAAGSDQRQLCVLEGFLHQTGLSWFAKDRKPNSKWLKSKTEFTG
TFDRMVCGVGWPQAIVHNQPLQNALLSSPWAVFVSTFLIY

>gi568815576f:44083330_44306423|GENSCAN_predicted_CDS_1|303_bp
atgaaggttttgcgttttaccctggagctggtgggagccatggggtgcactgcagcaggg
agtgaccaacgccagctttgtgtattggaaggatttctacatcagacaggactctcttgg
tttgcaaaggacagaaaacccaactcaaaatggcttaaaagcaaaacagaattcactggt
acatttgacagaatggtctgtggggttggatggcctcaggccatcgtgcataaccagccc
cttcagaatgcgctgctgagcagtccctgggcggtgttcgtgagcacgtttctcatttat
taa

>gi568815576f:44083330_44306423|GENSCAN_predicted_peptide_2|675_aa
MSGALLACCSKAIMPHPLAVPSSAAVEAGCPELEVFKVQGDSGVKRGNTILLLNLFHGER
VSDLQEEGKNAINSPMSPALVDVHPEDTQLGGVRNESYPTGTEENEERTMIDPTSKEDPK
FKELVKGTWARIMVPKDDHVIIPGAIDYHLTWQRDMPLQQLADRVQPKAPSLNDIVTPWL
ARGPQVLLDWINDVLVEERIIVKQLEEDLYDGQVLQKLLAAQTNESSVLRSSADSSSSTL
GDVAMFSLRGRMVAEKLAGCKLNVAEVTQSEIGQKQKLQTVLEAVHDLLRPRGWALRWSV
DSIHGKNLVAILHLLVSLAMHFRAPIRLPEHVTVQVVVVRDDDGPVRSGWSLGRPLGYPK
TERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQPNTGPLHTQFLCLER
AGPFSLCSVLLSHCGQDLANVPLFADGVYLVLLMGLLEDYFVPLHHFYLTPESFDQKVHN
VSFAFELMLDGGLKKPKARPEGGAHRTQTLWFSALGPHFDRGPLPSPAPSPESPMVLYEL
GAHDASYTCCQHPLNGGLCRVSKIARKWILSLPSTHCSHRFLPVHAEGSWPMKALSPKSR
KSLRGHRASEMNKVSDSQEGSCPHKESGPRLPGPQRELSGPLSVTGVFGPDVVNLDLKST
LRVLYNLFTKYKNVE

>gi568815576f:44083330_44306423|GENSCAN_predicted_CDS_2|2028_bp
atgagtggggccctgttggcctgctgctccaaagccatcatgccacacccccttgctgtt
ccatcatctgccgctgtggaggctggatgtccagagctagaggtgttcaaggttcaaggt
gattctggtgttaaaagaggaaataccattttacttctgaacctgtttcatggagaaaga
gtgagtgacctgcaggaagaaggcaagaatgccatcaactcaccgatgtcccccgccctg
gtggatgttcaccctgaagacacccagcttggcggggtcaggaatgaaagctaccccacg
gggacagaggagaacgaggagcgcacgatgattgaccccacttccaaggaagaccccaag
ttcaaggaactggtcaagggaacctgggccagaatcatggtccccaaagatgaccatgtg
ataatccctggagccattgactatcatcttacatggcaaagggacatgcccctccagcag
ctggctgatagagtgcaacccaaagccccctccctgaatgacatagttactccctggctg
gcccgagggccccaggtcctcctcgactggattaatgacgtgctggtggaggagaggatc
attgtgaagcagctggaggaagacctgtatgacggccaggtgctgcagaagctcttggca
gcccagacaaacgaatccagtgtcctccgctcctctgccgactcctcttcctccaccctg
ggtgacgtggccatgttcagtctgcggggccggatggtggcagaaaaactggcagggtgc
aagctgaatgtggctgaggtgacacagtccgaaatagggcagaaacagaagctgcagacg
gtgctggaagcagtacatgacctgctgcggccccgaggctgggcgctccggtggagcgtg
gactcaattcacgggaagaacctggtggccatcctccacctgctggtctctctggccatg
cacttcagggcccccatccgccttcctgagcatgtaacggtgcaggtggtggtcgtgcgg
gatgatgatgggccggttcggtcagggtggtccctggggaggcccctgggttaccccaag
acagagcgggatgccttcgacacgctgttcgaccacgccccggataagctcagcgtggtg
aagaagtctctcatcacttttgtgaacaagcacctgaacaagctgaatttggaggtgacg
gaactggagacccagcccaacacagggcctttgcacacgcagttcctctgtctagaacgt
gctggccccttcagcctctgctcagtgctgctgtcacactgtggccaggacctagcaaat
gtccccctgtttgcagatggcgtgtacctggttctgctcatgggccttctggaagactac
tttgttcctctccaccacttctacctgactccggaaagcttcgatcagaaggtccacaat
gtgtccttcgcctttgagctgatgctggacggaggcctcaagaaacccaaggctcgtcct
gaaggaggagcccacagaactcagacactgtggtttagtgccctgggcccccactttgac
cgtggccccctacctagccctgctccctctcctgagtcccccatggtgctatatgagttg
ggagcccatgatgcttcctacacctgttgccagcatccgctcaacggcgggctttgtaga
gtctccaaaatagctagaaaatggatcctgtcccttccatctacccactgcagccaccgc
ttcctgccagtccacgcggaaggttcctggccgatgaaggcactgagccccaaatcacgg
aagtcacttagaggtcacagagcaagtgaaatgaacaaggtgtctgattcccaggaaggt
tcttgtccacataaagaaagtggcccaagacttccagggccccagagggagctgtcgggt
ccattaagtgttactggggtttttggtcccgacgtggttaacttggacctcaaatccacc
ctgagggttctttacaacctgttcaccaagtacaagaacgtggagtga

>gi568815576f:44083330_44306423|GENSCAN_predicted_peptide_3|318_aa
MVELSRENEGLSEFGASQTVTPSPASSVQAWEAMEPEFLYDLLQLPKGVEPPAEEELSKG
GKKKYLPPTSRKDPKFEELQKVLMEWINATLLPEHIVVRSLEEDMFDGLILHHLFQRLAA
LKLEAEDIALTATSQKHKLTVVLEAVNRSLQLEEWQAKWSVESIFNKDLLSTLHLLVALA
KRFQPDLSLPTNVQVEVITIEAIVNFVNQKLDRLGLSVQNLDTQFADGVILLLLIGQLEG
FFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLSCPVSPEDIVNKDAKSTLRVLYGLF
CKHTQKAHRDRTPHGAPN

>gi568815576f:44083330_44306423|GENSCAN_predicted_CDS_3|957_bp
atggtggaactgtctagagaaaatgaggggctcagtgagtttggggcttctcagaccgtg
acgccctctcctgcctcctctgtgcaggcttgggaggcgatggagccggagttcttgtac
gacctgctgcagctccccaagggggtggagcccccagcggaggaggagctctcaaaagga
ggaaagaagaaatacctgccacccacttcccggaaggaccccaaatttgaagaactgcag
aaggtgttgatggagtggatcaatgccactcttctccccgagcacattgtggtccgcagc
ctggaggaggacatgttcgacgggctcatcctacaccacctattccagaggctggcggcg
ctcaagctggaagcagaggacatcgccctgacagccacaagccagaagcacaagctcaca
gtggtgctggaggccgtgaaccggagtctgcagctggaggagtggcaggccaagtggagc
gtggagagcatcttcaacaaggacctgttgtctaccctgcacctccttgtggccctggcc
aagcgcttccagcccgacctctccctcccaaccaacgtccaggtggaggtcatcactatc
gaggccatcgtgaactttgtcaaccagaagctggaccgcctgggcctgtctgtgcagaat
ctggacacccagtttgcagatggggtcatcttactcttgctgattggacaacttgaaggc
ttcttcctgcacttaaaggaattctacctcactcccaactctcctgcagaaatgctgcac
aacgtcaccctggcgctggagctgctgaaggacgagggcctgctcagctgccctgtcagc
cctgaagatatcgtgaacaaggatgccaagagcacactgagggtgctctatggtctgttc
tgcaagcacacgcagaaggcacacagggacaggacgccccatggagccccgaattga

>gi568815576f:44083330_44306423|GENSCAN_predicted_peptide_4|238_aa
MTSWVSSSPSPPLSPSSLSHHHHLHHYHHHHHHCHHHHHHGIIITIIILITSTVTIITIT
SSSPPSLSPSSPPLSPSSPSHHHHHHHPHRHLHCHHHHHDIITTIIINITIITTTVTIIT
ITSSSPPSSSSSPPHHQHHHHHHHCHHHHHQIVITIIMTIITTITPLSPSSPSLLLSSPS
HHHHYHHHHHYHHHCHHHHHCHHHHHCCHYHHHHIIIIIIIIIIITTGTKTVLEVPPP

>gi568815576f:44083330_44306423|GENSCAN_predicted_CDS_4|717_bp
atgacatcatgggtgtcatcatcaccatcaccaccactgtcaccatcatcactatcacat
catcatcacctccatcattatcaccatcatcaccaccactgtcaccatcatcaccatcac
ggcatcatcatcaccattatcatcctcatcacctccactgtcaccatcatcaccatcaca
tcatcatcacctccatcattatcaccatcatcacctccactgtcaccatcatcaccatca
catcatcatcatcaccatcatcctcatcgtcacctccactgtcaccatcatcaccatgac
atcatcaccaccatcatcatcaacatcaccatcatcaccaccactgtcaccatcatcacc
atcacatcatcatcacctccatcatcatcatcatcacctccacatcatcaacatcaccat
catcaccaccactgtcaccatcatcatcatcagatcgtcatcaccatcattatgaccatc
atcaccaccatcacaccactgtcaccatcatcaccatcactgttactatcatcaccatca
catcatcatcactatcatcaccatcatcactaccatcatcattgtcaccatcaccatcat
tgtcaccatcatcaccactgctgtcactatcatcaccatcacatcatcatcatcatcatc
attatcatcatcatcactacaggcacaaaaacagtgctggaagtccctcctccatag

>gi568815576f:44083330_44306423|GENSCAN_predicted_peptide_5|93_aa
MRRSVLDVLDVSRGVFDIHVENLVGEESEPCASLRCGPIGSGTCSFKRTSQLQLDVPRSH
ESPQKIIEWLANIQAKPPVREAARRDMNEECAG

>gi568815576f:44083330_44306423|GENSCAN_predicted_CDS_5|282_bp
atgaggagatcagtgttggacgtgttggatgtgagcagaggtgtctttgacatccacgtt
gaaaacctagttggagaggagagcgagccctgtgcctcgctcagatgcggccccattggg
agcggcacatgctcttttaaaagaacatcccaactgcagttggacgtcccacgttcccat
gaatcaccccagaaaataattgagtggctggcaaatattcaagccaaacccccagtgcgg
gaggcagcaagacgtgacatgaacgaggagtgtgcaggatga

>gi568815576f:44083330_44306423|GENSCAN_predicted_peptide_6|233_aa
MVMVRWLAWPLEQPGEAGREECDMDSFSAQDLVTIQSLALETLSAGADSAIRLAILTAAQ
WGYRSCGHSPAHQPTVAPGMLPHCTAFWKESLANVNSCSALTANTPWSHTLYYSSYGTLT
QYPREMCAFTSPRDVDVKVHSSFTDDGRKVETTQVSSKGDGETQCDLSPESPSLLDAVNV
EMSHRLTHGFGEEVLLMEHVKQERKGGAKEMVGGSGDVDVPVPHVYGTSKSCP

>gi568815576f:44083330_44306423|GENSCAN_predicted_CDS_6|702_bp
atggtcatggtcaggtggctggcctggccgctggagcagccaggtgaggcgggaagggaa
gaatgtgacatggactcattctcagcccaggacctggtgacaattcagtctctggccttg
gagacgctgtctgcaggtgcggacagtgccattaggctggccatcctcactgctgcccag
tggggctatcgctcctgtggacacagcccagctcatcagcccacagtagccccgggaatg
cttcctcattgcacagccttctggaaggaatctttggcaaatgtcaactcttgttctgct
ctcacggcaaacacgccttggtcacataccctttattacagcagctacgggacactcaca
caatacccaagagagatgtgtgcattcacttcaccaagagacgtggatgtgaaggttcat
agcagctttactgatgacggccggaaggtggaaacaacccaagtttcctcaaaaggtgat
ggagaaacacagtgtgacttgagtcccgaatctccctccctcttggatgccgtcaacgtt
gagatgtcccacagactgactcatggctttggggaggaggtattgctcatggaacacgtg
aagcaggaaagaaagggaggagccaaggagatggtgggaggcagcggggatgtggatgtg
ccggtcccccacgtctatgggacatccaagagctgcccttga

>gi568815576f:44083330_44306423|GENSCAN_predicted_peptide_7|392_aa
XSSGRINASQTMTSCGQQSLNVLAVLFSLLFSADASHALAHLVLTIPGGRTHSAHFTNEE
GLCWLREGSRGGFIVTKWPKPMALTAQWWPVLSAHFRVCEPYTDHKGRYHFGFHCPRLSD
NKTFILCCHHNNTVFKYCCNETEFQAVMQANLTASSEGYMHNNYTALLGVWIYGFFVLML
LVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPRPGQRAPQPQPPPGPL
PQAPQAVHTLRGDAHSPPLMTFQSSSAWEGASQQQEIPENEETEKGDDQISSFLGVTSNT
KEASVIGIQKTVDVLISVPALDSDGDESLPWTMMVMRGPEGTQWDCRESPPPTHALVPNC
ADSPECRLQSQPLGTLLKPKPMLLLPPHPGCG

>gi568815576f:44083330_44306423|GENSCAN_predicted_CDS_7|1179_bp
ngcagctctggacggatcaatgcaagccagacgatgaccagttgtggccagcagtccttg
aacgtgctcgccgtcctcttctcattgctgttttctgcagatgcttcccatgctttggct
cacctggtcctcaccatccctggaggacggacccactcagcccattttacaaatgaggaa
gggctctgttggctccgggaaggcagccggggaggcttcatcgttaccaaatggccaaag
cccatggcgctgaccgcccagtggtggccggtcttgtctgcacatttccgggtctgtgaa
ccatacacagaccacaaaggccgctaccactttggcttccactgcccccggctctcggac
aacaagaccttcatcctctgttgtcaccataacaacacggtcttcaaatactgctgcaac
gagacggagttccaggcggtgatgcaggcgaacctcacggccagctccgagggttacatg
cacaacaattacaccgccttgttgggagtgtggatctatggatttttcgtgttgatgctg
ctggttctggaccttttgtattactcggcaatgaactacgacatctgcaaggtctacctg
gcacggtggggcatccaaggacgatggatgaaacaggacccccggcggtgggggaacccc
gctcgggcccctcggccgggtcagcgggccccacagccgcagcctcccccaggcccgctg
ccacaagccccacaggccgtgcacacattgcggggagatgctcacagcccaccgctgatg
accttccagagttcgtctgcctgggagggtgccagccaacagcaagaaattccagaaaat
gaggagactgaaaagggagatgaccaaatatcttctttccttggcgtaacatcaaatacc
aaggaggcttctgtgattggaattcagaagacagttgatgtcctgatctcagtgcctgcc
ctggacagtgatggtgatgagagcctgccctggacaatgatggtgatgagaggtcccgag
ggtacacagtgggactgcagggaatctcctcctcctacccacgccctggtgcccaactgt
gcagactccccagagtgcaggctacagtcccagcctctaggaaccctcctcaagccgaag
cctatgctgctcctcccgccgcatcctggatgtggctga