GENSCAN 1.0	Date run:  5-Nov-116	Time: 00:11:00

Sequence gi568815592r:34188756_34492362 : 303607 bp : 46.67% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1023   1093   71  2  2   80   92   113 0.473  11.42
 1.02 Intr +   1333   1569  237  1  0   24    8   270 0.652   9.33
 1.03 Intr +   1711   1957  247  1  1  -38   33   395 0.838  18.86
 1.04 Intr +   2075   2288  214  1  1  -38  -12   258 0.002   1.49
 1.05 Term +   7634   8052  419  0  2   12   48   251 0.800   8.94
 1.06 PlyA +   8624   8629    6                               1.05

 2.00 Prom +  14911  14950   40                              -2.86
 2.01 Init +  30686  30965  280  1  1   48   -9   211 0.458   4.57
 2.02 Intr +  34672  34709   38  2  2  142   95     2 0.606   4.28
 2.03 Intr +  35545  35641   97  0  1  100   26    61 0.134   0.68
 2.04 Intr +  43406  43539  134  0  2   96   76    48 0.934   4.76
 2.05 Intr +  44083  44138   56  0  2   82   74    39 0.721  -0.32
 2.06 Intr +  46070  46265  196  2  1   73   48   113 0.928   5.22
 2.07 Intr +  47349  47418   70  2  1   93   86    52 0.978   4.25
 2.08 Intr +  48127  48208   82  2  1   73   69    38 0.500  -0.90
 2.09 Intr +  48449  48562  114  2  0  105  101    46 0.499   7.16
 2.10 Intr +  52016  52127  112  2  1   81  117   104 0.500  12.98
 2.11 Intr +  53957  54040   84  1  0  127   80    46 0.995   7.72
 2.12 Intr +  55764  55860   97  2  1  138   72    31 0.965   6.08
 2.13 Term +  56224  56327  104  2  2   97   48    52 0.959   0.54
 2.14 PlyA +  57452  57457    6                               1.05

 3.07 PlyA -  57659  57654    6                               1.05
 3.06 Term -  58113  58048   66  0  0  103   43    93 0.987   4.24
 3.05 Intr -  58394  58289  106  1  1  117  105   119 0.999  16.72
 3.04 Intr -  58737  58712   26  0  2  114  101    -9 0.950  -0.18
 3.03 Intr -  59003  58926   78  2  0   90   79    98 0.721   8.85
 3.02 Intr -  60477  60224  254  1  2   60   94   127 0.903   7.65
 3.01 Init -  61883  61835   49  2  1   86   58    43 0.853   0.21
 3.00 Prom -  65390  65351   40                              -4.76

 4.03 PlyA -  66007  66002    6                               1.05
 4.02 Term -  74732  74550  183  2  0   54   55   381 0.991  28.94
 4.01 Init -  74918  74817  102  2  0   98   -5   254 0.463  17.34
 4.00 Prom -  75530  75491   40                              -6.16

 5.00 Prom +  79065  79104   40                              -4.56
 5.01 Init +  80539  80700  162  0  0   97   66   117 0.674   9.40
 5.02 Intr +  83994  84096  103  2  1  108   67    43 0.623   3.95
 5.03 Term +  95801  95877   77  0  2   88   44   122 0.857   5.80
 5.04 PlyA +  96978  96983    6                               1.05

 6.09 PlyA -  97328  97323    6                               1.05
 6.08 Term - 100176  99998  179  1  2  125   42    94 0.983   6.35
 6.07 Intr - 104780 104696   85  2  1  113   99    72 0.937  10.19
 6.06 Intr - 153217 153107  111  1  0   86   69    84 0.144   6.88
 6.05 Intr - 203668 203509  160  0  1    3   78   307 0.001  21.19
 6.04 Intr - 203928 203739  190  1  1   70  -78   184 0.001  -1.36
 6.03 Intr - 236085 235914  172  0  1   77   86   163 0.942  14.52
 6.02 Intr - 236539 236317  223  0  1   46   91   239 0.475  18.13
 6.01 Init - 237323 237277   47  2  2   40  105    62 0.368   2.98
 6.00 Prom - 241832 241793   40                              -2.36

 7.00 Prom + 244851 244890   40                              -4.66
 7.01 Init + 244902 244971   70  2  1   64   70   101 0.967   7.11
 7.02 Intr + 247266 247377  112  1  1   74   31    35 0.281  -4.16
 7.03 Intr + 249849 249920   72  0  0  107   67    72 0.343   5.52
 7.04 Intr + 250366 250461   96  1  0   69   69   118 0.286   7.12
 7.05 Intr + 259705 259743   39  1  0  125  103    31 0.772   5.64
 7.06 Term + 260461 260575  115  1  1   53   42    99 0.718  -0.16
 7.07 PlyA + 261234 261239    6                               1.05

 8.00 Prom + 261893 261932   40                              -6.56
 8.01 Init + 266991 266997    7  2  1  114  100     0 0.372   4.99
 8.02 Intr + 277369 277515  147  2  0  133   91    80 0.849  13.01
 8.03 Intr + 283960 284002   43  2  1  138  116    -5 0.498   4.60
 8.04 Intr + 297514 297649  136  1  1   78  111    40 0.033   5.87
 8.05 Term + 299443 299598  156  0  0   91   43    46 0.033  -1.67
 8.06 PlyA + 300125 300130    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 124706 124811  106  2  1   30   50   163 0.824   4.58
S.002 Init + 128727 128784   58  2  1   75   61    90 0.836   6.47
S.003 Init - 183349 183217  133  1  1   94   47    79 0.826   4.70
S.004 Sngl - 203889 203770  120  0  0  105   54   325 0.977  21.25


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:34188756_34492362|GENSCAN_predicted_peptide_1|395_aa
MSFTTRSTTFSTNYQSLDSMQPPRVRSLETENRRLESKIQEYLEKKGPQVRDWGHYFKTM
EDLRAQIFANSVNNASIILQIDNPHLAADETELAMCQSGERHLSGLTVEVDAPKSQDLAK
IMADIQAQYDKLSQKNREKLNQYCSHQTEESTTVVTTQSAKIRAAEMTLMKLRRTVQSLE
INLDSTRAEEQRQAQEYKALLNIQVKLEAEMATYHHLLEDGKDFNLGMPWTAAIPCKRPP
SNRPPSPRRQDSGWQSGAAKRATTARGRQAATRDSQGQAHAGHQPHYSSASQVGTHGARA
STLLTAASRIPLNSCPHGNPSLQGSRLPGIPVRPQRRPCGRSLGTAAAHQVCCTPSVRGP
SECTLRLLHCERERGERNMDPKTLALAELRLGPMP

>gi568815592r:34188756_34492362|GENSCAN_predicted_CDS_1|1188_bp
atgagcttcaccactcgctctaccaccttctccaccaactaccagtccctggactcaatg
cagccgcccagagtgaggagcctggagactgagaatcggaggctggagagcaaaatccag
gagtatctggagaagaagggaccccaggtcagagattgggggcattacttcaagaccatg
gaggacctgagggctcagatcttcgcaaattctgtgaacaatgccagcatcattctgcag
attgacaatccccatcttgccgctgatgagacagagctggccatgtgccagtctggagag
cgacatctctctgggttaaccgtggaggtagatgcccccaaatcacaggatcttgccaag
atcatggcagacatccaggcccaatatgacaagctgtctcagaagaatcgagagaagctg
aaccagtactgctcccaccagactgaggagagcaccacagtggtcaccacgcagtctgcc
aagatcagagctgctgagatgacgctcatgaagctgagacgtacagtccagtccttggag
atcaacctggactcaacccgggcagaggagcagcgccaggcccaggagtacaaggccctg
ctgaatatccaggtcaagctggaggccgagatggccacctaccaccacctgctggaagac
ggcaaggacttcaatcttgggatgccctggacagcagcaattccatgcaaacgaccacca
tccaacagaccaccctccccccgccgccaggatagtggatggcaaagtggcgcggcgaag
cgggccacgaccgcgagggggcgccaggcagccacgcgagactcccagggtcaggcccac
gcgggccaccagccgcactactcttccgcttcccaagtcggcacacacggcgcccgtgcc
tccacgctgctgactgctgcaagtcgaatccctctcaactcctgtccgcacgggaacccc
agtttacaggggagccggctgcctggcatcccggtgcggccacagaggcgtccttgtgga
aggagcctggggaccgctgcggcccatcaagtgtgctgcacgccctccgtgcgcggcccg
tcggagtgcaccttgcgcctcctgcattgtgaaagggagcggggagaacggaacatggac
ccaaagacactggcactggcagagctccgcctggggccgatgccttag

>gi568815592r:34188756_34492362|GENSCAN_predicted_peptide_2|487_aa
MGDVEKGKKIFIMKRSQCHIVEKGGKHKTGPNLHGLFGRKTGQAPGHSYIATIKNKDIIW
GEDTLMEYLENPKKYIPGTKMIFVGIKKEEAGHGRLHGCCSTESQLTAARTPPAGSRYAA
AARTPGSGLRVPVGLGERGWHYSMYHAGGIACVLVYPLVHPTQCKPLEDRNVATHFKATP
LVVISSGVGEELGFLGDLALKKGGHTSHTDGERCTRERGRTGPSPHLPSRQAASPVPGPS
SLRGLGEREVEGRAALGGSPSPDLGPKSQRKGPGPQVGLRISRTPSKSPQAPLSRCCAPL
IGTPSRGYFWRWRGSKKASAFATSGGRGGARPVLSAQHRRSRQPGARTAGRRPSSREGKM
SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKT
RGVSHILKLIAALSSALLPSLGLGAKGAWLLALGPPSPPPLAATPIFHLCPHHHTTQHTS
RCRAPMG

>gi568815592r:34188756_34492362|GENSCAN_predicted_CDS_2|1464_bp
atgggtgatgttgagaaaggcaagaagatttttattatgaagcgttcccagtgccacatt
gttgaaaagggaggcaagcataagactgggccaaatctccatggtctcttcgggcggaag
acaggtcaggcccctggacactcttacatagccaccattaagaacaaagacatcatctgg
ggagaggatacactgatggagtatttggagaatcccaagaagtacatccctggaacaaaa
atgatctttgtcggcattaagaaggaagaggctgggcacggtcggctgcatgggtgctgc
tcaacagaaagccagctgacagcagcacgcacacccccggccggctcacggtacgcggcc
gctgcccgcactcccgggtcgggcctgcgcgtccctgtggggttgggcgagcggggctgg
cattacagcatgtaccacgctggtggaattgcctgtgtacttgtctatcccctcgtgcac
cccactcaatgcaagccccttgaggacaggaatgtagctacccatttcaaggccacaccc
ttggtggtgatttcttcaggggttggagaggagctgggcttccttggggatttagccctg
aagaagggcggccacacgtcccacacggacggggagagatgtacccgagagagagggcgg
acaggaccctctccgcacctccccagccgccaggccgccagcccggtgcccgggcctagc
agcctccgcggccttggagagcgcgaagtggaggggcgcgcggctctggggggcagcccg
agcccagacctgggtcccaagtcccaacggaagggcccaggtccccaagtgggcctgcgt
atctccagaacaccatctaagtcacctcaagctcccctgagccggtgctgcgctcctcta
attgggactccgagccggggctatttctggcgctggcgcggctccaagaaggcatccgca
tttgctaccagcggcggccgcggcggagccaggccggtcctcagcgcccagcaccgccgc
tcccggcaacccggagcgcgcaccgcaggccggcggccgagctcgcgagaagggaagatg
agtgagtcgagctcgaagtccagccagcccttggcctccaagcaggaaaaggacggcact
gagaagcggggccggggcaggccgcgcaagcagcctccgaaggagcccagcgaagtgcca
acacctaagagacctcggggccgaccaaagggaagcaaaaacaagggtgctgccaagacc
cggggagtcagtcacatcctgaagctcattgctgccctgagctctgccctcctgccctcc
ctgggcctgggggccaagggggcttggctcctggctctgggcccaccatcaccaccgcct
ctggccgccacccccatcttccacctgtgccctcaccaccacactacacagcacaccagc
cgctgcagggctcccatgggctga

>gi568815592r:34188756_34492362|GENSCAN_predicted_peptide_3|192_aa
MGFHLFGQAGLELLTSALGCPLPPPGGPCKPRCPRLRTAHPRLRIGGSRNLQATGFPLPD
WLRPGAEARPISPGPLITRLTAFPGPGSQPRAFLSGLQRREANSDSMVGYVLGPFFLITL
VGVVVAVVMYVQKKKRVDRLRHHLLPMYSYDPAEELHEAEQELLSDMGDPKVVHGWQSGY
QHKRMPLLDVKT

>gi568815592r:34188756_34492362|GENSCAN_predicted_CDS_3|579_bp
atggggtttcacctctttggccaggctggtctcgaactcctgacatcagccctcggctgc
cccctgccgccgccgggcggaccctgcaagccccgctgtccccgccttcgcaccgcccac
ccccgcctccggattggcggctccagaaatctccaggccaccggctttccgctaccggat
tggctgcgtccgggtgctgaggcccggcccatttccccgggtcctttgatcacgcgcctg
acggcttttccggggcccgggagccaaccgagggcgttcctgtcggggctgcagcggcgg
gaggccaacagcgactccatggtgggctatgtgttggggcccttcttcctcatcaccctg
gtcggggtggtggtggctgtggtaatgtatgtacagaagaaaaagcgggtggaccggctg
cgccatcacctgctccccatgtacagctatgacccagctgaggaactgcatgaggctgag
caggagctgctctctgacatgggagaccccaaggtggtacatggctggcagagtggctac
cagcacaagcggatgccactgctggatgtcaagacgtga

>gi568815592r:34188756_34492362|GENSCAN_predicted_peptide_4|94_aa
MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKTQKENLRKFYKGRNYKPLDLRPKKTR
AMRRRLNKHEENPKTKKQQRKERLYPLGKYAVKA

>gi568815592r:34188756_34492362|GENSCAN_predicted_CDS_4|285_bp
atggccaagatcaaggctcgagatcttcgcgggaagaaggaggagctgctgaaacagctg
gacgacctgaaggtggagctgtcccagctgcgcgtcgccaaaactcagaaagaaaacctc
aggaaattctacaagggcaggaactacaagcccctggacctgcggcctaagaagacacgc
gccatgcgccgccggctcaacaagcatgaggagaacccgaagaccaagaagcagcagcgg
aaggagcggctgtacccgctggggaagtacgcggtcaaggcctga

>gi568815592r:34188756_34492362|GENSCAN_predicted_peptide_5|113_aa
MPEPPTHSMGSCAARASPTSTTPCSTAPSPIDHPRAEECERTAPDWQAAPPAAPPPAGFN
CLCSEVWMEVPASQGRCEGLGPGPWAYADEDADSNKGIKKVLDENEKYVKDNM

>gi568815592r:34188756_34492362|GENSCAN_predicted_CDS_5|342_bp
atgcctgagcctcccacccactccatgggctcctgtgccgcccgagcctccccaacgagc
accaccccctgctccacggcgcccagtcccatcgaccacccaagggctgaggagtgcgag
cgcacggcgccggactggcaggcagctccacctgcagccccgccccctgcaggcttcaac
tgcctctgcagtgaggtgtggatggaagtacctgcctctcagggtagatgtgaaggtctg
ggtcctgggccctgggcctatgcagatgaggatgcggactccaacaaaggcattaagaaa
gtactagatgaaaatgagaaatatgtgaaggataacatgtga

>gi568815592r:34188756_34492362|GENSCAN_predicted_peptide_6|388_aa
MLLPFQPRYRTLQPQRIKNLITGPRPRYSEVLLTIVSFLQMLMPKKNRIAIYELLFKEGV
MVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLR
DYLHLPPEIVPATLRRSRPETGRPRPKGRCSLTPLTHRAQDGGAVVVGGGGGRGGGGPGG
SGDGSRDGGSGGAGPGPGGMRRPRRASGGAVAGSPPLDSCDPHRTPTRARRMMKLKSNQT
RTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCE
ENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYHKPVQASYFETLR
QGYSANNGTPVVATTYSVSAQSSMSGIR

>gi568815592r:34188756_34492362|GENSCAN_predicted_CDS_6|1167_bp
atgctccttcctttccagccccggtaccggaccctgcagccgcagaggatcaagaacttg
attaccgggccccggcctcgttactcagaagtgctcttgacaatcgtctccttcttgcag
atgttgatgcctaagaagaaccggattgccatttatgaactcctttttaaggagggagtc
atggtggccaagaaggatgtccacatgcctaagcacccggagctggcagacaagaatgtg
cccaaccttcatgtcatgaaggccatgcagtctctcaagtcccgaggctacgtgaaggaa
cagtttgcctggagacatttctactggtaccttaccaatgagggtatccagtatctccgt
gattaccttcatctgcccccggagattgtgcctgccaccctacgccgtagccgtccagag
actggcaggcctcggcctaaaggccggtgcagccttacgccgctgacgcatcgcgcccaa
gatggcggcgcggtcgtcgtcgggggtggcggcggcagagggggcggcggccctggcggc
agcggagacggcagccgtgacggtggcagcggcggcgcgggacctgggcctgggggaatg
aggcggccgcggcgggccagcggcggagccgtagcgggctccccacccctcgactcctgc
gacccgcaccgcacccccacccgggcccggaggatgatgaagctcaagtcgaaccagacc
cgcacctacgacggcgacggctacaagaagcgggccgcatgcctgtgtttccgcagcgag
agcgaggaggaggtgctactcgtgagcagtagtcgccatccagacagatggattgtccct
ggaggaggcatggagcccgaggaggagccaagtgtggcagcagttcgtgaagtctgtgag
gagaaccaggagaggaagcacaggacgtatgtctatgtgctcattgtcactgaagtgctg
gaagactgggaagattcagttaacattggaaggaagagggaatggtttaaaatagaagac
gccataaaagtgctgcagtatcacaaacccgtgcaggcatcatattttgaaacattgagg
caaggctactcagccaacaatggcaccccagtcgtggccaccacatactcggtttctgct
cagagctcgatgtcaggcatcagatga

>gi568815592r:34188756_34492362|GENSCAN_predicted_peptide_7|167_aa
MIHIAVEVVYTGGHHVAVNVYAQGSIPLNEYTKIVYAFFLDGHLSCYQFLAITNKAARSI
RSLDKALILSTNCQSEKSLNPPNERAVTLTTKIRGFIFEVSETKNPPEGANSGHTDLLSQ
GWQGIRPYRWSTGKADAIWRFHFLSHGTGSLQIGEQALSLTPAVFCA

>gi568815592r:34188756_34492362|GENSCAN_predicted_CDS_7|504_bp
atgatccacattgctgtggaggtggtctatactggaggccatcacgttgctgtcaatgtc
tatgctcaaggaagtattccactgaatgaatataccaaaatagtttatgcattcttcctc
gatggacatttgagttgttatcagtttttggctatcaccaataaagctgctagaagcatc
aggtctttagacaaagctttaattctttcaaccaactgccaatcagaaaaatctttgaat
ccacctaatgaaagagctgtaacactcaccaccaagatccgtggcttcatttttgaagtc
agcgagaccaagaacccaccagaaggagccaattctggacacactgacctgctctcccag
ggctggcagggcatacggccctatcggtggagcactggcaaggctgatgccatatggcgg
ttccacttcctcagccatggaactggatctttgcaaattggagagcaggcgctgagcctc
actcctgctgtcttctgtgcctga

>gi568815592r:34188756_34492362|GENSCAN_predicted_peptide_8|162_aa
MPTPARSQSDAVAAAAPAPSSPGKSAGLEAGPQTSRFAPSRRRWSPELLPPGLWCLKPGG
MGKGVRAQLSAEREGGGGVVKYLSPMWFSQPWGEVGAIIPALKMRKQEGGQTLTIALSHF
PSIPGKGAPRDVPGNYLAAKAIILPCPLPYKQCEACTEGPSG

>gi568815592r:34188756_34492362|GENSCAN_predicted_CDS_8|489_bp
atgcccaccccggcgagatcccagagcgacgcggtggcggcggcagcgccagccccctcc
tcccccgggaagtcggccgggcttgaggccgggccccagacgtcccgcttcgccccgagt
cgccgccgatggtccccggagctcctgcccccaggcctgtggtgcctgaaacctggcggg
atgggaaagggggtaagagcacagctgtcagctgagagggagggaggaggaggtgttgta
aaatatttgtctccaatgtggttctcacagccatggggtgaagtaggtgccatcatcccc
gctttgaagatgagaaaacaggaagggggccagaccctgaccattgccctttcccatttc
ccatcaataccaggcaagggagcaccaagagatgtcccagggaattacctggctgccaag
gctattattcttccctgccccttgccatacaaacagtgtgaggcttgtacagaaggccca
agtggatga