GENSCAN 1.0	Date run:  4-Nov-116	Time: 22:23:23

Sequence gi568815591f:129557352_129855178 : 297827 bp : 44.76% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1153   1266  114  0  0   53   81   117 0.937   7.71
 1.02 Intr +   9153   9219   67  2  1   67   33    80 0.045  -1.12
 1.03 Intr +  25238  25414  177  0  0    6  116   179 0.040  12.39
 1.04 Term +  26304  26845  542  1  2  -29   55   432 0.803  22.62
 1.05 PlyA +  29263  29268    6                               1.05

 2.00 Prom +  45008  45047   40                              -4.76
 2.01 Init +  54280  54473  194  0  2   97  105   210 0.300  20.04
 2.02 Intr +  97403  97517  115  2  1   86  115   -47 0.009  -1.75
 2.03 Intr +  99995 100223  229  1  1   29   72   279 0.030  17.84
 2.04 Intr + 114078 114192  115  1  1   97   85    87 0.863   8.81
 2.05 Intr + 120281 120407  127  2  1   91  103    65 0.953   8.98
 2.06 Intr + 133055 133195  141  1  0  104   94   179 0.945  20.65
 2.07 Intr + 151724 151882  159  1  0  108   76   106 0.590  11.58
 2.08 Intr + 153023 153220  198  1  0   67  109    37 0.863   3.25
 2.09 Intr + 154124 154225  102  1  0  112   94   106 0.999  13.97
 2.10 Intr + 159868 160025  158  0  2  112   41    92 0.590   5.71
 2.11 Intr + 160306 160461  156  1  0   45   64   130 0.171   5.43
 2.12 Intr + 169890 170014  125  0  2  113   95    56 0.259   9.03
 2.13 Intr + 186822 186878   57  1  0   59   94    55 0.034   2.06
 2.14 Term + 197667 197830  164  1  2  119   44   245 0.928  21.30
 2.15 PlyA + 199702 199707    6                               1.05

 3.00 Prom + 200349 200388   40                              -6.56
 3.01 Sngl + 205049 205408  360  1  0   79   53   215 0.339  11.18
 3.02 PlyA + 205919 205924    6                               1.05

 4.08 PlyA - 206192 206187    6                               1.05
 4.07 Term - 212434 212273  162  1  0   45   48   102 0.373  -0.16
 4.06 Intr - 213172 212958  215  2  2  118   36    61 0.238   2.33
 4.05 Intr - 214797 214685  113  2  2  106   31    65 0.324   2.62
 4.04 Intr - 217249 217174   76  2  1   97   32    59 0.211  -0.23
 4.03 Intr - 221514 221375  140  2  2  101   55    55 0.685   3.61
 4.02 Intr - 222254 221738  517  0  1   95   65   107 0.242   1.12
 4.01 Init - 222541 222439  103  1  1   56  109    90 0.620   6.35
 4.00 Prom - 224588 224549   40                              -4.06

 5.00 Prom + 226251 226290   40                              -6.76
 5.01 Init + 228357 228457  101  2  2   79   69   143 0.192   9.24
 5.02 Intr + 233659 233764  106  1  1   33   49    84 0.035  -0.78
 5.03 Term + 247369 247479  111  0  0  102   49    74 0.678   3.46
 5.04 PlyA + 250040 250045    6                               1.05

 6.00 Prom + 261650 261689   40                              -1.86
 6.01 Init + 267475 267599  125  0  2   36   75   142 0.408   5.45
 6.02 Intr + 267654 267757  104  0  2   65   68    35 0.105  -0.98
 6.03 Term + 276842 276957  116  0  2   84   44   131 0.933   7.03
 6.04 PlyA + 277227 277232    6                               1.05

 7.04 PlyA - 277246 277241    6                              -0.45
 7.03 Term - 277710 277586  125  1  2   76   39   221 0.960  14.55
 7.02 Intr - 281984 281856  129  0  0  101  116    62 0.671  10.97
 7.01 Init - 297287 297284    4  2  1  100   80     0 0.185   0.56

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  25151  25414  264  0  0   55  116   199 0.912  16.88
S.002 Init + 100001 100223  223  1  1   51   72   260 0.812  19.42


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:129557352_129855178|GENSCAN_predicted_peptide_1|299_aa
MALIDVGFVGEKRADGSPLSGQLFTIPGRRAKLAVGNMGSKKEKNENRAKGEAPYKTIRS
LDWELYVDGSSFINPQGERCAGYAVVILDAVIEAKSLPQGTSAQKAELIALIWALELSEG
PTVLSGIQAYGEAPFEDLNIDFTKMPKCGSNKYLLVPVCTYSGWVEAYPTRTKKARVLLR
DLIARFGLPLWIGSENGPAFVADLVQKTAKVMSVDQRLERSPLAATVERTPDCHLDHSHS
CEGRGNPSLGPPQLRKTCSTGDLVGETKPRQPLQSDSEEVDKPCSSHTRKPTGPLMAEA

>gi568815591f:129557352_129855178|GENSCAN_predicted_CDS_1|900_bp
atggccctcattgacgtgggcttcgtgggtgagaaacgggctgatgggtcgcctctttca
gggcagttgttcactattccagggaggagggccaagctggcagtgggcaacatgggcagc
aagaaggagaagaatgagaaccgagcaaagggggaagccccttataaaaccatcagatct
ttagactgggagctgtacgtggacgggagcagcttcatcaacccacaaggagagaggtgt
gcgggatatgcggtggtaatcctggatgctgtcattgaagccaaatcattgccccagggc
acttcagcccagaaggccgaactcattgctttaatttgggccttagagctgagtgaaggt
ccaaccgtcctgtctggcatacaagcttatggagaagccccctttgaagatctcaatata
gacttcaccaagatgcccaaatgtggcagtaacaagtatttgctagttccagtgtgtaca
tactctgggtgggtggaggcctatccaacacgaaccaagaaagctcgtgttcttctccga
gatctcatcgctaggtttggactgcccttatggatcggctcagaaaatgggccggcgttt
gtggctgacttggtacagaagacagcaaaggtgatgagtgtggatcaaagactggaacgt
agcccccttgcagccacggtggaaaggaccccagactgtcatcttgaccactcccacagc
tgtgaaggtagagggaatcccagcctgggtccaccacagctgcgtaaaacctgcagcacc
ggagacctggtaggtgagaccaagcctagacaacccctgcaaagtgactctgaagaagtc
gacaagccctgctccagtcacacccggaagccgactggtccactcatggccgaagcatga

>gi568815591f:129557352_129855178|GENSCAN_predicted_peptide_2|679_aa
MAAAGRGSRAVRRVRALSLPSPSSAAAAAAEAAALAIAAGGRRLRGAGAVAVSTAQAHGS
AAALRDQLALFMWVYFWTFSSVTLVYFSGVSPIPYYLDYCRFMNFMEEHGVTQTEHMATI
EAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAG
PVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCI
SPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPV
SVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQR
VSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHLVPSQTVVQTFSNPDG
TVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQA
SEATQAVASLAEAAVAASQEMQQGATVTMALNSSFYWLLMERSSPHHSSLLPPPSPNNQC
SLSDFQPKLVKPSRLSYSVSSKQKHEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALT
GVQDANGLFMADRAGRKWILTDKATGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVTTRI
SDSAVTMDGQAVEVVTLEQ

>gi568815591f:129557352_129855178|GENSCAN_predicted_CDS_2|2040_bp
atggcggcggccgggcggggaagccgggccgtgcgtcgcgtgcgtgccctctccctcccc
tccccctcctcggcggcggcggcggcggcagaagcggcagcgctcgccattgccgctggt
ggcaggaggctgcgaggagccggcgcggtcgcagtctccacggcgcaggcccacggtagc
gcagccgctctgagagatcagctggctctatttatgtgggtctatttctggaccttctct
tctgttacattggtctatttctctggtgtttcaccaataccatactatcttgattactgt
aggtttatgaacttcatggaggaacacggagtgacccaaaccgaacatatggctaccata
gaagcacatgcagtggcccagcaagtgcagcaggtccatgtggctacttacaccgagcat
agtatgctgagtgctgatgaagactcgccttcttctcccgaggacacctcttacgatgac
tcagatatactcaactccacagcagctgatgaggtgacagctcatctggcagctgcaggt
cctgtgggaatggccgctgctgctgctgtggcaacaggaaagaaacggaaacggcctcat
gtatttgagtctaatccatctatccggaagaggcaacaaacacgtttgcttcggaaactt
cgagccacgttagatgaatatactactcgtgtgggacagcaagctattgtcctctgtatc
tcaccctccaaacctaaccctgtctttaaagtgtttggtgcagcacctttggagaatgtg
gtgcgtaagtacaagagcatgatcctggaagacctggagtctgctctggcagaacacgcc
cctgcgccacaggaggttaactcagaactgccgcctctcaccatcgacggaattccagtc
tctgtggacaaaatgacccaggcccagcttcgggcatttatcccagagatgctcaagtac
tctacaggtcggggaaaaccaggctgggggaaagaaagctgcaagcccatctggtggcct
gaagatatcccctgggcaaatgtccggagtgatgtccgcacagaagagcaaaagcagagg
gtttcatggacccaggcactacggaccatagttaaaaactgttataaacagcatgggcgg
gaagaccttttgtatgcctttgaagatcagcaaacgcaaacacaggccacagccacacat
agtatagctcatcttgtaccatcacagactgtagtccagacttttagtaaccctgatggc
actgtctcacttatccaggttggtacgggggcaacagtagccacattggctgatgcttca
gaattgccaaccacggtcaccgttgcccaagtgaattattctgccgtggctgatggagag
gtggaacaaaattgggccacgttacagggaggtgagatgaccatccagacgacgcaagca
tcagaggccacccaggcggtggcatcgttggcagaggccgcagtggcagcttctcaggag
atgcagcagggagctacagtcactatggcgcttaacagttccttctactggctgttgatg
gaaagatcatctccgcatcattcttcactcctgccgccacccagccccaacaaccagtgt
agcctttctgacttccagcccaagctggtcaagccttcccgtttatcctattctgtgtcc
agtaagcagaagcacgaagctgccgcccatgctgtcgccaccctggctgaggccacctta
caaggtgggggacagatcgtcttgtctggggaaaccgcagcagccgtcggagcacttact
ggagtccaagatgctaatggcctctttatggcagatcgtgcaggtcgcaagtggatcctg
actgacaaagccacaggcctggtccagatccctgtgagcatgtaccagactgtggtgacc
agcctcgcccagggcaacggaccagtgcaggtggccatggcccctgtgaccaccaggata
tcagacagcgcagtcaccatggacggccaagctgtggaggtggtgacattggaacagtga

>gi568815591f:129557352_129855178|GENSCAN_predicted_peptide_3|119_aa
MKTSWALLRSLGAGHSCGAVGHGRAEGPWPRGLPSMPTPTPPVGPSQCGPCLLAQPERHD
AGKRLRPAGAQHLPDCERGSPQMAWAKAARVRETRRGVTQSPSASRTQSRRRGRTRLAG

>gi568815591f:129557352_129855178|GENSCAN_predicted_CDS_3|360_bp
atgaagacttcgtgggccctgctgaggtccttgggagcagggcattcgtgcggggctgtg
gggcacggccgagctgagggtccctggcccaggggcctcccgtccatgccgacgcccact
cctcccgtaggacccagccagtgcgggccctgtcttctagcccagcctgaacgccacgat
gcagggaagcgcctgaggcctgccggggctcaacacctgcccgactgtgagcgcggaagc
ccgcagatggcctgggcgaaggcggcccgggtgcgggagacgcgacgcggggtcactcag
agcccgagcgcatcccgaacccagagccgccgtcgggggcgcacccgattggccggctga

>gi568815591f:129557352_129855178|GENSCAN_predicted_peptide_4|441_aa
MRLFPNRGRFCLASLVWTPRGAERRLCAQPGAGAGGGAHGAPGSRVRQWRLPSAQRCSRA
GAGAGAAAVRVRPVLARCLPARSLAGVGLRFAALVGSGGSARLGGGCGERRGPGAGPSSV
LSGLRGWFEAASVARSRPAQSLGESGSQTSRVPPLRGHSSREPRRTRMRHRSPPSTAPFL
LIALVAPRFPALPQDRRLDGLPLAPHRQGAAAPPRFAPVFAKLLRAKILRARWRILGPGH
SALRVRITLYLSPTHLAQLLCEGPALVGSQIALHCLGPRPLSQPLPSLRRVEMRSGTIDR
LQPQAADGARLVRPQLAQTEASPAPGGSCLPPPVFGNGRTHTGEVTGSGGSRLANYGART
QPAPCAQPAREGPAMLDLLFSARKEGTQVAHGLDLYASSIPLHGFVPPDASEPETKPPLT
FPELVFAVGAPLSRSRATGSE

>gi568815591f:129557352_129855178|GENSCAN_predicted_CDS_4|1326_bp
atgcggctctttccaaaccggggccgtttttgcctggcttctctggtgtggactccgcgc
ggagctgagaggcggctgtgcgcccagcctggagccggcgcaggcggaggcgcccacggg
gcgcctgggtcccgggtccgccagtggcgtctgcccagcgcccagcgctgttcccgggcg
ggggcgggggcgggagcggctgcggtccgagtgcggccggtgcttgcgaggtgcctaccc
gcgaggagtttggctggggtcgggctgcgtttcgccgccctggtgggctcaggcggaagc
gccaggctgggagggggctgcggagagcgccggggccccggagctggcccctccagcgtc
ttgtcagggctgcgcggctggttcgaggctgcttccgtggcccggagccgccccgcccag
tctctgggggaaagcggctctcagacctcccgtgtgcctccacttcgcggccactcatcc
cgggaaccccggcgcacgcgaatgagacaccgttccccgccctcaactgccccattcctg
ttaatagcgctagtggcacccaggttcccagcccttccccaagatcggcggctggacggc
ttgcctctggcgcctcaccggcaaggtgcggcggcgcctcccaggtttgcgcccgtcttc
gcaaagctcctgagggcgaaaatcctgcgagccaggtggcggattctcgggccgggtcac
tcagctctacgggtgcgcatcaccctctacctgtcacccacccatctggctcagctgctg
tgtgagggcccagcgctggtgggcagccagatcgccttacactgcctggggccacggcca
ttatcccagcctctgcccagcctcaggcgggtcgaaatgcgatccggcaccattgatcgc
ctgcagccccaggctgccgatggagcccggctggtgcggccacagctggcacagaccgag
gcctccccagctcctggggggagctgcttgcctccccccgtttttggcaatggtagaact
cacactggtgaggtaacaggatccggtggttctagacttgccaactatggggcgaggact
cagccggcaccctgtgcacagccagcgagggaagggccggccatgctggacctgctgttc
tccgcgaggaaggaggggactcaggtggcccatgggctggacctctatgcctccagcatt
ccacttcatggatttgttcctcctgacgcctcagaacctgagacaaagcctccactcacc
ttcccagagcttgtgtttgcagtgggagctcccctgagccggagccgggccacagggtca
gagtga

>gi568815591f:129557352_129855178|GENSCAN_predicted_peptide_5|105_aa
MRSVQDLGVPFSLHPRLTAGSSPDAYRLFAPSLSAFMDIISSDSQDNPILRVRKLRLGEI
EWLAQAIQLLCIEMKRNTNQRCLLNVLGVSCSHHHFIERFLDGKR

>gi568815591f:129557352_129855178|GENSCAN_predicted_CDS_5|318_bp
atgcgctctgtccaggacctaggagtccctttctccctccaccctcggctcacagcgggc
agctcccccgacgcgtaccgcctctttgcccccagcctgagtgctttcatggacatcatc
tcatctgattctcaggataaccccattttacgagtgagaaaactgagacttggagagatt
gagtggcttgctcaagccatccagctactctgcatcgaaatgaagagaaacacaaaccag
cgatgtctcctcaacgtcctgggcgttagctgttcccaccatcacttcatagagaggttt
ctggatgggaagcgttag

>gi568815591f:129557352_129855178|GENSCAN_predicted_peptide_6|114_aa
MRPAAAILSCTGSGHPQPAHALVVAKPQLLLAVGSGLRFPARASDRRQEEGARESPEGGR
RSLHSINLRRERPAGPGLDFTLYPKKKNWFRKHFPKFLQQNTVAAGPGSVKGSN

>gi568815591f:129557352_129855178|GENSCAN_predicted_CDS_6|345_bp
atgaggcctgccgcagccattctcagctgcaccgggtccgggcatccacagccggctcac
gcgctggtggtcgccaagcctcagctcttgctggctgttggttcagggcttcggttccca
gccagagcaagtgataggagacaggaagagggagctagagagagccctgaaggtggacgt
cgcagtcttcactcaatcaatctccgcagggaacgccctgcaggcccaggtctggatttc
acgctctaccccaagaaaaagaactggttcagaaaacacttccccaagtttctccaacag
aacactgtggctgcagggcctggtagtgtgaagggcagcaactga

>gi568815591f:129557352_129855178|GENSCAN_predicted_peptide_7|85_aa
MNLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQE
EGTGDSSSESSMSDFSEDEAQDMEL

>gi568815591f:129557352_129855178|GENSCAN_predicted_CDS_7|258_bp
atgaatcttaccaatatatttgagtccttcctgcctcagttattggcctatcctaacccc
atagatcctctcaatggtgacgctgcagccatgtacctccaccgaccagaagaatacaag
cagaaaattaaagagtacatccagaaatacgccacggaggaggcgctgaaagaacaggaa
gagggtaccggggacagctcatcggagagctctatgtctgacttttccgaagatgaggcc
caggatatggagttgtag