Result of FASTA (ccds) for pF1KB6488
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6488, 357 aa
  1>>>pF1KB6488 357 - 357 aa - 357 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4502+/-0.000831; mu= 18.7104+/- 0.051
 mean_var=136.4848+/-24.943, 0's: 0 Z-trim(113.3): 64  B-trim: 46 in 1/51
 Lambda= 0.109782
 statistics sampled from 13894 (13960) to 13894 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.429), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS6328.1 NOV gene_id:4856|Hs108|chr8             ( 357) 2606 423.7 1.2e-118
CCDS5151.1 CTGF gene_id:1490|Hs108|chr6            ( 349) 1357 225.9 4.1e-59
CCDS6371.1 WISP1 gene_id:8840|Hs108|chr8           ( 367) 1021 172.7 4.4e-43
CCDS5098.1 WISP3 gene_id:8838|Hs108|chr6           ( 354)  820 140.8 1.6e-33
CCDS5097.1 WISP3 gene_id:8838|Hs108|chr6           ( 372)  820 140.9 1.7e-33
CCDS13336.1 WISP2 gene_id:8839|Hs108|chr20         ( 250)  795 136.7 2.1e-32
CCDS706.1 CYR61 gene_id:3491|Hs108|chr1            ( 381)  578 102.6 5.9e-22


>>CCDS6328.1 NOV gene_id:4856|Hs108|chr8                  (357 aa)
 initn: 2606 init1: 2606 opt: 2606  Z-score: 2243.8  bits: 423.7 E(32554): 1.2e-118
Smith-Waterman score: 2606; 99.7% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KB6 MQSVQSTSFCLRKQCLCLTFLLLHLLGQVAATQRCPPQCPGQCPATPPTCAPGVRAVLDG
       :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS63 MQSVQSTSFCLRKQCLCLTFLLLHLLGQVAATQRCPPQCPGRCPATPPTCAPGVRAVLDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 CSCCLVCARQRGESCSDLEPCDESSGLYCDRSADPSNQTGICTAVEGDNCVFDGVIYRSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 CSCCLVCARQRGESCSDLEPCDESSGLYCDRSADPSNQTGICTAVEGDNCVFDGVIYRSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EKFQPSCKFQCTCRDGQIGCVPRCQLDVLLPEPNCPAPRKVEVPGECCEKWICGPDEEDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EKFQPSCKFQCTCRDGQIGCVPRCQLDVLLPEPNCPAPRKVEVPGECCEKWICGPDEEDS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LGGLTLAAYRPEATLGVEVSDSSVNCIEQTTEWTACSKSCGMGFSTRVTNRNRQCEMLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LGGLTLAAYRPEATLGVEVSDSSVNCIEQTTEWTACSKSCGMGFSTRVTNRNRQCEMLKQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TRLCMVRPCEQEPEQPTDKKGKKCLRTKKSLKAIHLQFKNCTSLHTYKPRFCGVCSDGRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TRLCMVRPCEQEPEQPTDKKGKKCLRTKKSLKAIHLQFKNCTSLHTYKPRFCGVCSDGRC
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KB6 CTPHNTKTIQAEFQCSPGQIVKKPVMVIGTCTCHTNCPKNNEAFLQELELKTTRGKM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 CTPHNTKTIQAEFQCSPGQIVKKPVMVIGTCTCHTNCPKNNEAFLQELELKTTRGKM
              310       320       330       340       350       

>>CCDS5151.1 CTGF gene_id:1490|Hs108|chr6                 (349 aa)
 initn: 1352 init1: 910 opt: 1357  Z-score: 1174.8  bits: 225.9 E(32554): 4.1e-59
Smith-Waterman score: 1357; 51.5% identity (74.6% similar) in 338 aa overlap (21-357:15-348)

               10        20        30        40         50         
pF1KB6 MQSVQSTSFCLRKQCLCLTFLLLHLLGQVAATQRCPPQCPGQCPATP-PTCAPGVRAVLD
                           .:: : .. :. : :   :  .::  : : :  ::  :::
CCDS51       MTAASMGPVRVAFVVLLALCSRPAVGQNCSGPC--RCPDEPAPRCPAGVSLVLD
                     10        20        30          40        50  

      60        70        80        90       100       110         
pF1KB6 GCSCCLVCARQRGESCSDLEPCDESSGLYCDRSADPSNQTGICTAVEGDNCVFDGVIYRS
       ::.:: :::.: :: :.. .:::  .::.:  ..  . . :.::: .:  :.: :..:::
CCDS51 GCGCCRVCAKQLGELCTERDPCDPHKGLFCHFGSPANRKIGVCTAKDGAPCIFGGTVYRS
             60        70        80        90       100       110  

     120       130       140       150       160       170         
pF1KB6 GEKFQPSCKFQCTCRDGQIGCVPRCQLDVLLPEPNCPAPRKVEVPGECCEKWICGPDEED
       ::.:: :::.:::: :: .::.: :..:: :: :.:: ::.:..::.:::.:.:   ...
CCDS51 GESFQSSCKYQCTCLDGAVGCMPLCSMDVRLPSPDCPFPRRVKLPGKCCEEWVCDEPKDQ
            120       130       140       150       160       170  

     180       190       200       210       220       230         
pF1KB6 SLGGLTLAAYRPEATLGVEVSDSSVNCIEQTTEWTACSKSCGMGFSTRVTNRNRQCEMLK
       .. : .::::: : :.: . .   .::. :::::.::::.::::.:::::: : .:.. :
CCDS51 TVVGPALAAYRLEDTFGPDPTMIRANCLVQTTEWSACSKTCGMGISTRVTNDNASCRLEK
            180       190       200       210       220       230  

     240       250       260       270       280       290         
pF1KB6 QTRLCMVRPCEQEPEQPTDKKGKKCLRTKKSLKAIHLQFKNCTSLHTYKPRFCGVCSDGR
       :.::::::::: . :.   ::::::.:: :  : :......:::..::. .:::::.:::
CCDS51 QSRLCMVRPCEADLEENI-KKGKKCIRTPKISKPIKFELSGCTSMKTYRAKFCGVCTDGR
            240       250        260       270       280       290 

     300       310       320       330       340       350        
pF1KB6 CCTPHNTKTIQAEFQCSPGQIVKKPVMVIGTCTCHTNCPKNNEAFLQELELKTTRGKM 
       ::::: : :. .::.:  :...:: .: : ::.:: ::: .:. : . :  .   : : 
CCDS51 CCTPHRTTTLPVEFKCPDGEVMKKNMMFIKTCACHYNCPGDNDIF-ESLYYRKMYGDMA
             300       310       320       330        340         

>>CCDS6371.1 WISP1 gene_id:8840|Hs108|chr8                (367 aa)
 initn: 688 init1: 293 opt: 1021  Z-score: 887.0  bits: 172.7 E(32554): 4.4e-43
Smith-Waterman score: 1021; 43.1% identity (65.8% similar) in 313 aa overlap (37-344:46-353)

         10        20        30           40        50        60   
pF1KB6 TSFCLRKQCLCLTFLLLHLLGQVAATQRCPPQ-C--PGQCPATPPTCAPGVRAVLDGCSC
                                     :: :  : .:: .:: :  ::  . ::: :
CCDS63 AASTVLATALSPAPTTMDFTPAPLEDTSSRPQFCKWPCECPPSPPRCPLGVSLITDGCEC
          20        30        40        50        60        70     

            70        80        90        100       110       120  
pF1KB6 CLVCARQRGESCSDLEPCDESSGLYCDRSAD-PSNQTGICTAVEGDNCVFDGVIYRSGEK
       : .::.: :..:..   ::   ::::: :.: :    :.:. : : .::.::: : .:..
CCDS63 CKMCAQQLGDNCTEAAICDPHRGLYCDYSGDRPRYAIGVCAQVVGVGCVLDGVRYNNGQS
          80        90       100       110       120       130     

            130       140       150       160       170       180  
pF1KB6 FQPSCKFQCTCRDGQIGCVPRCQLDVLLPEPNCPAPRKVEVPGECCEKWICGPDEEDSLG
       :::.::..::: :: .::.: : : :  :.  :: ::.: .::.:::.:.:   :.:.  
CCDS63 FQPNCKYNCTCIDGAVGCTPLC-LRVRPPRLWCPHPRRVSIPGHCCEQWVC---EDDAKR
         140       150        160       170       180          190 

            190        200       210       220       230       240 
pF1KB6 GLTLAAYRPEATLGV-EVSDSSVNCIEQTTEWTACSKSCGMGFSTRVTNRNRQCEMLKQT
           :     :  .: ::     :::  :. :. :: :::.: :::..: : ::   ...
CCDS63 PRKTAPRDTGAFDAVGEVEAWHRNCIAYTSPWSPCSTSCGLGVSTRISNVNAQCWPEQES
             200       210       220       230       240       250 

             250       260       270       280       290       300 
pF1KB6 RLCMVRPCEQEPEQPTDKKGKKCLRTKKSLKAIHLQFKNCTSLHTYKPRFCGVCSDGRCC
       ::: .:::. .  .   : ::::: . .   .... . .: : ..:.:..:::: :.:::
CCDS63 RLCNLRPCDVDI-HTLIKAGKKCLAVYQPEASMNFTLAGCISTRSYQPKYCGVCMDNRCC
             260        270       280       290       300       310

             310       320       330       340       350        
pF1KB6 TPHNTKTIQAEFQCSPGQIVKKPVMVIGTCTCHTNCPKNNEAFLQELELKTTRGKM 
        :...:::.. :::  :   .. :. :..: :. .: . :. :              
CCDS63 IPYKSKTIDVSFQCPDGLGFSRQVLWINACFCNLSCRNPNDIFADLESYPDFSEIAN
              320       330       340       350       360       

>>CCDS5098.1 WISP3 gene_id:8838|Hs108|chr6                (354 aa)
 initn: 870 init1: 254 opt: 820  Z-score: 715.1  bits: 140.8 E(32554): 1.6e-33
Smith-Waterman score: 821; 37.2% identity (62.8% similar) in 336 aa overlap (27-350:36-353)

                   10        20        30            40        50  
pF1KB6     MQSVQSTSFCLRKQCLCLTFLLLHLLGQVA-ATQR---CPPQCPGQCPATPPTCAP
                                     :.:. : ::   :   :  .::   : : :
CCDS50 FSTLLLAGLAQFCCRVQGTGPLDTTPEGRPGEVSDAPQRKQFCHWPC--KCPQQKPRCPP
          10        20        30        40        50          60   

             60        70        80        90        100       110 
pF1KB6 GVRAVLDGCSCCLVCARQRGESCSDLEPCDESSGLYCDRSAD-PSNQTGICTAVEGDNCV
       ::  : :::.:: .::.: :: :.. . ::  .::::: :.: :  .::.:. . . .: 
CCDS50 GVSLVRDGCGCCKICAKQPGEICNEADLCDPHKGLYCDYSVDRPRYETGVCAYLVAVGCE
            70        80        90       100       110       120   

             120       130       140       150          160        
pF1KB6 FDGVIYRSGEKFQPSCKFQCTCRDGQIGCVPRCQLDVLLPE---PNCPAPRKVEVPGECC
       :. : :..:. :::.  :.: : .: :::.:     ...:.    .: . .     :.  
CCDS50 FNQVHYHNGQVFQPNPLFSCLCVSGAIGCTP-----LFIPKLAGSHCSGAKG----GKKS
           130       140       150            160       170        

      170          180       190       200       210       220     
pF1KB6 EKWICGPD---EEDSLGGLTLAAYRPEATLGVEVSDSSVNCIEQTTEWTACSKSCGMGFS
       ..  :. .   .. : .  :. :::    .  .      .:. :.:.:: ::..::::.:
CCDS50 DQSNCSLEPLLQQLSTSYKTMPAYRNLPLIWKK------KCLVQATKWTPCSRTCGMGIS
          180       190       200             210       220        

         230       240       250        260       270       280    
pF1KB6 TRVTNRNRQCEMLKQTRLCMVRPCEQEPEQPTD-KKGKKCLRTKKSLKAIHLQFKNCTSL
       .::::.: .::: :. :::...::...  .     ::: :  : .  :: .. :..:.: 
CCDS50 NRVTNENSNCEMRKEKRLCYIQPCDSNILKTIKIPKGKTCQPTFQLSKAEKFVFSGCSST
      230       240       250       260       270       280        

          290       300       310       320       330       340    
pF1KB6 HTYKPRFCGVCSDGRCCTPHNTKTIQAEFQCSPGQIVKKPVMVIGTCTCHTNCPKNNEAF
       ..::: :::.: : ::: :...: :  .:.:      :  .. : .:.:. :: . .. :
CCDS50 QSYKPTFCGICLDKRCCIPNKSKMITIQFDCPNEGSFKWKMLWITSCVCQRNCREPGDIF
      290       300       310       320       330       340        

          350       
pF1KB6 LQELELKTTRGKM
        .::..       
CCDS50 -SELKIL      
       350          

>>CCDS5097.1 WISP3 gene_id:8838|Hs108|chr6                (372 aa)
 initn: 870 init1: 254 opt: 820  Z-score: 714.9  bits: 140.9 E(32554): 1.7e-33
Smith-Waterman score: 821; 37.2% identity (62.8% similar) in 336 aa overlap (27-350:54-371)

                   10        20        30            40        50  
pF1KB6     MQSVQSTSFCLRKQCLCLTFLLLHLLGQVA-ATQR---CPPQCPGQCPATPPTCAP
                                     :.:. : ::   :   :  .::   : : :
CCDS50 FSTLLLAGLAQFCCRVQGTGPLDTTPEGRPGEVSDAPQRKQFCHWPC--KCPQQKPRCPP
            30        40        50        60        70          80 

             60        70        80        90        100       110 
pF1KB6 GVRAVLDGCSCCLVCARQRGESCSDLEPCDESSGLYCDRSAD-PSNQTGICTAVEGDNCV
       ::  : :::.:: .::.: :: :.. . ::  .::::: :.: :  .::.:. . . .: 
CCDS50 GVSLVRDGCGCCKICAKQPGEICNEADLCDPHKGLYCDYSVDRPRYETGVCAYLVAVGCE
              90       100       110       120       130       140 

             120       130       140       150          160        
pF1KB6 FDGVIYRSGEKFQPSCKFQCTCRDGQIGCVPRCQLDVLLPE---PNCPAPRKVEVPGECC
       :. : :..:. :::.  :.: : .: :::.:     ...:.    .: . .     :.  
CCDS50 FNQVHYHNGQVFQPNPLFSCLCVSGAIGCTP-----LFIPKLAGSHCSGAKG----GKKS
             150       160       170            180           190  

      170          180       190       200       210       220     
pF1KB6 EKWICGPD---EEDSLGGLTLAAYRPEATLGVEVSDSSVNCIEQTTEWTACSKSCGMGFS
       ..  :. .   .. : .  :. :::    .  .      .:. :.:.:: ::..::::.:
CCDS50 DQSNCSLEPLLQQLSTSYKTMPAYRNLPLIWKK------KCLVQATKWTPCSRTCGMGIS
            200       210       220             230       240      

         230       240       250        260       270       280    
pF1KB6 TRVTNRNRQCEMLKQTRLCMVRPCEQEPEQPTD-KKGKKCLRTKKSLKAIHLQFKNCTSL
       .::::.: .::: :. :::...::...  .     ::: :  : .  :: .. :..:.: 
CCDS50 NRVTNENSNCEMRKEKRLCYIQPCDSNILKTIKIPKGKTCQPTFQLSKAEKFVFSGCSST
        250       260       270       280       290       300      

          290       300       310       320       330       340    
pF1KB6 HTYKPRFCGVCSDGRCCTPHNTKTIQAEFQCSPGQIVKKPVMVIGTCTCHTNCPKNNEAF
       ..::: :::.: : ::: :...: :  .:.:      :  .. : .:.:. :: . .. :
CCDS50 QSYKPTFCGICLDKRCCIPNKSKMITIQFDCPNEGSFKWKMLWITSCVCQRNCREPGDIF
        310       320       330       340       350       360      

          350       
pF1KB6 LQELELKTTRGKM
        .::..       
CCDS50 -SELKIL      
         370        

>>CCDS13336.1 WISP2 gene_id:8839|Hs108|chr20              (250 aa)
 initn: 549 init1: 309 opt: 795  Z-score: 695.3  bits: 136.7 E(32554): 2.1e-32
Smith-Waterman score: 795; 47.2% identity (67.0% similar) in 233 aa overlap (18-249:10-237)

               10        20        30        40        50        60
pF1KB6 MQSVQSTSFCLRKQCLCLTFLLLHLLGQVAATQRCPPQCPGQCPATPPTCAPGVRAVLDG
                        :.: :: ::..:  :: ::  :   ::  :: :  ::  ::::
CCDS13         MRGTPKTHLLAFSLLCLLSKVR-TQLCPTPCT--CPWPPPRCPLGVPLVLDG
                       10        20         30          40         

               70        80        90       100        110         
pF1KB6 CSCCLVCARQRGESCSDLEPCDESSGLYCDRSADPSNQTGICTAVEGDN-CVFDGVIYRS
       :.:: ::::. :: :..:. :: :.:: :. .: :... ..:  .: :. :  .: .:: 
CCDS13 CGCCRVCARRLGEPCDQLHVCDASQGLVCQPGAGPGGRGALCLLAEDDSSCEVNGRLYRE
      50        60        70        80        90       100         

     120       130       140       150       160       170         
pF1KB6 GEKFQPSCKFQCTCRDGQIGCVPRCQLDVLLPEPNCPAPRKVEVPGECCEKWICGPDEED
       :: ::: :...: :.:: . ::: :. :: ::  .:: ::.::: :.:: .:.::  .  
CCDS13 GETFQPHCSIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVLGKCCPEWVCG--QGG
     110       120       130       140       150       160         

     180       190       200       210       220       230         
pF1KB6 SLGGLTLAAYRPEATLGVEVSDSSVNCIEQTTEWTACSKSCGMGFSTRVTNRNRQCEMLK
       .::   : :  :. .  :     .: : : .: :  :: .::.:..:::.:.:: :..  
CCDS13 GLGTQPLPAQGPQFSGLVSSLPPGVPCPEWSTAWGPCSTTCGLGMATRVSNQNRFCRLET
       170       180       190       200       210       220       

     240       250       260       270       280       290         
pF1KB6 QTRLCMVRPCEQEPEQPTDKKGKKCLRTKKSLKAIHLQFKNCTSLHTYKPRFCGVCSDGR
       : :::. :::                                                  
CCDS13 QRRLCLSRPCPPSRGRSPQNSAF                                     
       230       240       250                                     

>>CCDS706.1 CYR61 gene_id:3491|Hs108|chr1                 (381 aa)
 initn: 1155 init1: 345 opt: 578  Z-score: 507.6  bits: 102.6 E(32554): 5.9e-22
Smith-Waterman score: 1113; 44.2% identity (65.5% similar) in 362 aa overlap (16-343:9-365)

               10        20        30        40        50        60
pF1KB6 MQSVQSTSFCLRKQCLCLTFLLLHLLGQVAATQRCPPQCPGQCPATPPTCAPGVRAVLDG
                      : :.  ::::   . .:  ::  :  .::   : :::::  : ::
CCDS70        MSSRIARALALVVTLLHLTRLALST--CPAAC--HCPLEAPKCAPGVGLVRDG
                      10        20          30          40         

               70        80        90       100        110         
pF1KB6 CSCCLVCARQRGESCSDLEPCDESSGLYCDRSADPSNQTGICTA-VEGDNCVFDGVIYRS
       :.:: :::.: .:.::  .:::...:: :. .:. .   ::: :  ::  : ... ::..
CCDS70 CGCCKVCAKQLNEDCSKTQPCDHTKGLECNFGASSTALKGICRAQSEGRPCEYNSRIYQN
      50        60        70        80        90       100         

     120       130       140       150       160       170         
pF1KB6 GEKFQPSCKFQCTCRDGQIGCVPRCQLDVLLPEPNCPAPRKVEVPGECCEKWICGPD---
       ::.:::.:: :::: :: .::.: :  .. ::. .:: :: :.: :.:::.:.:  :   
CCDS70 GESFQPNCKHQCTCIDGAVGCIPLCPQELSLPNLGCPNPRLVKVTGQCCEEWVCDEDSIK
     110       120       130       140       150       160         

            180         190           200                          
pF1KB6 ----EEDSLGG--LTLAAYRPEATLGVEV----SDSSVN--------------------C
           ..:.: :  : . : . : : . :.    . ::..                    :
CCDS70 DPMEDQDGLLGKELGFDASEVELTRNNELIAVGKGSSLKRLPVFGMEPRILYNPLQGQKC
     170       180       190       200       210       220         

        210       220       230       240       250       260      
pF1KB6 IEQTTEWTACSKSCGMGFSTRVTNRNRQCEMLKQTRLCMVRPCEQEPEQPTDKKGKKCLR
       : ::: :. :::.:: :.:::::: : .:...:.::.: :::: : :   . :::::: .
CCDS70 IVQTTSWSQCSKTCGTGISTRVTNDNPECRLVKETRICEVRPCGQ-PVYSSLKKGKKCSK
     230       240       250       260       270        280        

        270       280       290       300       310       320      
pF1KB6 TKKSLKAIHLQFKNCTSLHTYKPRFCGVCSDGRCCTPHNTKTIQAEFQCSPGQIVKKPVM
       :::: . ... . .: :.. :.:..:: : :::::::. :.:.. .:.:  :.  .: ::
CCDS70 TKKSPEPVRFTYAGCLSVKKYRPKYCGSCVDGRCCTPQLTRTVKMRFRCEDGETFSKNVM
      290       300       310       320       330       340        

        330       340       350         
pF1KB6 VIGTCTCHTNCPKNNEAFLQELELKTTRGKM  
       .: .: :. :::. :::                
CCDS70 MIQSCKCNYNCPHANEAAFPFYRLFNDIHKFRD
      350       360       370       380 




357 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:08:33 2016 done: Fri Nov  4 23:08:33 2016
 Total Scan time:  2.380 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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