Result of FASTA (omim) for pF1KB8956
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8956, 333 aa
  1>>>pF1KB8956 333 - 333 aa - 333 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2992+/-0.000308; mu= 14.5369+/- 0.019
 mean_var=157.2391+/-32.116, 0's: 0 Z-trim(121.8): 255  B-trim: 1545 in 1/50
 Lambda= 0.102281
 statistics sampled from 38755 (39031) to 38755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.458), width:  16
 Scan time:  6.390

The best scores are:                                      opt bits E(85289)
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 2213 337.7   2e-92
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301)  390 68.7 1.8e-11
NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3  ( 364)  384 67.9 3.8e-11
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159)  367 65.0 1.3e-10
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1  ( 234)  367 65.1 1.6e-10
NP_001099044 (OMIM: 613380) homeobox protein HMX3  ( 357)  368 65.5 1.9e-10
NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324)  364 64.9 2.7e-10
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348)  316 57.8 3.9e-08
XP_006723629 (OMIM: 604612) PREDICTED: homeobox pr ( 202)  305 55.9 8.4e-08
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430)  309 56.9 9.1e-08
NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2  ( 273)  305 56.1   1e-07
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  305 56.2 1.2e-07
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  305 56.2 1.2e-07
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  305 56.3 1.4e-07
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  305 56.3 1.4e-07
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  305 56.3 1.4e-07
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  305 56.3 1.4e-07
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  305 56.3 1.4e-07
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  305 56.3 1.4e-07
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 56.5 1.7e-07
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 56.5 1.7e-07
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 56.5 1.7e-07
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 56.5 1.7e-07
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 56.5 1.7e-07
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 56.5 1.7e-07
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 56.5 1.7e-07
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 56.5 1.7e-07
NP_003308 (OMIM: 118700,188550,600635,610978) home ( 371)  300 55.5 2.1e-07
NP_001073136 (OMIM: 118700,188550,600635,610978) h ( 401)  300 55.5 2.2e-07
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273)  291 54.0 4.3e-07
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273)  291 54.0 4.3e-07
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488)  291 54.3 6.2e-07
NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4  ( 354)  288 53.7 6.9e-07
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  283 52.9   1e-06
NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8  ( 239)  280 52.3 1.2e-06
NP_036608 (OMIM: 604295) ventral anterior homeobox ( 290)  271 51.1 3.4e-06
NP_057254 (OMIM: 604240) T-cell leukemia homeobox  ( 284)  269 50.8 4.2e-06
NP_001980 (OMIM: 142996) homeobox even-skipped hom ( 407)  271 51.3 4.3e-06
NP_066305 (OMIM: 604640) T-cell leukemia homeobox  ( 291)  266 50.4 5.7e-06
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363)  263 50.0   9e-06
NP_001073927 (OMIM: 142991) homeobox even-skipped  ( 476)  264 50.3 9.7e-06
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  263 50.1   1e-05
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  263 50.1   1e-05
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  263 50.1   1e-05
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  263 50.1   1e-05
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  263 50.1   1e-05
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  263 50.1   1e-05
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  263 50.1   1e-05
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432)  263 50.1   1e-05
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342)  261 49.7 1.1e-05


>>NP_001180 (OMIM: 602183,613330) homeobox protein Nkx-3  (333 aa)
 initn: 2213 init1: 2213 opt: 2213  Z-score: 1780.1  bits: 337.7 E(85289): 2e-92
Smith-Waterman score: 2213; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)

               10        20        30        40        50        60
pF1KB8 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 AGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLR
              250       260       270       280       290       300

              310       320       330   
pF1KB8 PPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
       :::::::::::::::::::::::::::::::::
NP_001 PPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
              310       320       330   

>>NP_001129743 (OMIM: 217095,611770) homeobox protein Nk  (301 aa)
 initn: 347 init1: 282 opt: 390  Z-score: 326.8  bits: 68.7 E(85289): 1.8e-11
Smith-Waterman score: 395; 39.3% identity (60.7% similar) in 247 aa overlap (98-332:37-258)

        70        80        90       100        110         120    
pF1KB8 DSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRC-ADARGAS--GAGLAGGSLS
                                     : :: .  :  :. ::.   .:: .::. .
NP_001 TSTPFSVKDILRLERERSCPAASPHPRVRKSPENFQYLRMDAEPRGSEVHNAGGGGGDRK
         10        20        30        40        50        60      

          130       140         150       160       170       180  
pF1KB8 LGQPVCELAASKDLEEEAAGRSDS--EMSASVSGDRSPRTEDDGVGPRGAHVSALCSGAG
       :           :  :  .:  ..  ::.:   :. .:    ....: :. . .   :.:
NP_001 L-----------DGSEPPGGPCEAVLEMDAERMGEPQPGL--NAASPLGGGTRVPERGVG
                    70        80        90         100       110   

            190       200        210       220       230       240 
pF1KB8 GGGGSGPAGVAEEEEEPAAPKPRKKRS-RAAFSHAQVFELERRFNHQRYLSGPERADLAA
       ..: :  .: .:.      :: :..:. :. ::.:::. :::::..:::::.:::  ::.
NP_001 NSGDSVRGGRSEQ------PKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLAS
           120             130       140       150       160       

             250       260       270         280       290         
pF1KB8 SLKLTETQVKIWFQNRRYKTKRRQMAADL-LASAP-AAKKVAVKVLVRDDQRQYLPGEVL
       .:.:: ::::::::::::: ::...  .: ::. : . ..::: ::::: .    ::   
NP_001 ALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHPLTPRRVAVPVLVRDGKPCLGPG---
       170       180       190       200       210       220       

     300       310           320       330                         
pF1KB8 RPPSLLPLQPSYYY----PYYCLPGWALSTCAAAAGTQ                      
        : .  :  :: :     :: :  :.. .  .:. ::                       
NP_001 -PGA--PAFPSPYSAAVSPYSCYGGYSGAPYGAGYGTCYAGAPSGPAPHTPLASAGFGHG
             230       240       250       260       270       280 

NP_001 GQNATPQGHLAATLQGVRAW
             290       300 

>>NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 [Hom  (364 aa)
 initn: 295 init1: 295 opt: 384  Z-score: 321.1  bits: 67.9 E(85289): 3.8e-11
Smith-Waterman score: 384; 49.0% identity (68.7% similar) in 147 aa overlap (190-330:131-274)

     160       170       180       190       200        210        
pF1KB8 PRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRS-RAAFSHAQV
                                     ::  .  ::   ::::..:. :. ::.:::
NP_660 CSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQV
              110       120       130       140       150       160

      220       230       240       250       260       270        
pF1KB8 FELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASA----
       :::::::..:::::.:::  ::.::::: ::::::::::::: ::...  .:  .:    
NP_660 FELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPP
              170       180       190       200       210       220

          280       290        300       310       320       330   
pF1KB8 PAAKKVAVKVLVRDDQRQYLPG-EVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
       :  ..::: ::::: .    :. ..   :  .  .    : :  .:... .. ::::   
NP_660 PPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASA---YSYNSFPAYGYGNSAAAAAAA
              230       240       250          260       270       

NP_660 AAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSG
       280       290       300       310       320       330       

>>NP_001243268 (OMIM: 602041) homeobox protein Nkx-3.1 i  (159 aa)
 initn: 440 init1: 355 opt: 367  Z-score: 311.7  bits: 65.0 E(85289): 1.3e-10
Smith-Waterman score: 392; 53.2% identity (72.2% similar) in 126 aa overlap (199-322:42-155)

      170       180       190       200       210       220        
pF1KB8 PRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQ
                                     : .::  .:::::::::.::.::::.:.::
NP_001 AETLAETEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQ
              20        30        40        50        60        70 

      230       240       250       260       270       280        
pF1KB8 RYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRD
       .:::.:::: :: .:::::::::::::::::::::.:....:              : . 
NP_001 KYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGD------------LEKH
              80        90       100       110                     

      290       300       310         320       330   
pF1KB8 DQRQYLPGEVLRPPSLLPLQPSY-YYPY-YCLPGWALSTCAAAAGTQ
       ..   :  :..   ::. .  :: :::: ::. .:.           
NP_001 SSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW       
     120       130       140       150                

>>NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 isof  (234 aa)
 initn: 480 init1: 355 opt: 367  Z-score: 309.8  bits: 65.1 E(85289): 1.6e-10
Smith-Waterman score: 396; 39.6% identity (62.3% similar) in 212 aa overlap (136-322:32-230)

         110       120       130       140       150       160     
pF1KB8 RCADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDD
                                     .:. ...: :. .. :.. . :  :. : .
NP_006 LRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEPE
              10        20        30        40        50        60 

         170          180       190                           200  
pF1KB8 GVGPR---GAHVSALCSGAGGGGGSGPAGVAEEEEE--------------------PAAP
         : :   ::. . : .:  ..   . . .:: : :                    : .:
NP_006 PEGGRSRAGAQNDQLSTGPRAAPEEAET-LAETEPERHLGSYLLDSENTSGALPRLPQTP
              70        80         90       100       110       120

            210       220       230       240       250       260  
pF1KB8 KPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTK
       :  .:::::::::.::.::::.:.::.:::.:::: :: .::::::::::::::::::::
NP_006 KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK
              130       140       150       160       170       180

            270       280       290       300       310         320
pF1KB8 RRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSY-YYPY-YCLPG
       :.:....:   .   :. .. .: .         :..   ::. .  :: :::: ::. .
NP_006 RKQLSSEL---GDLEKHSSLPALKE---------EAFSRASLVSVYNSYPYYPYLYCVGS
                 190       200                210       220        

              330   
pF1KB8 WALSTCAAAAGTQ
       :.           
NP_006 WSPAFW       
      230           

>>NP_001099044 (OMIM: 613380) homeobox protein HMX3 [Hom  (357 aa)
 initn: 375 init1: 271 opt: 368  Z-score: 308.4  bits: 65.5 E(85289): 1.9e-10
Smith-Waterman score: 368; 33.0% identity (55.5% similar) in 330 aa overlap (10-319:29-346)

                                  10        20        30           
pF1KB8                    MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAP-----
                                   . :::. .::  ..:     :. .: :     
NP_001 MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHR---PPPKPQPPPRTLFA
               10        20        30        40           50       

         40        50        60         70            80           
pF1KB8 GGTAASVAAAPAVCCWRLFGERDAG-ALGGAEDSLLASP----AGTRTA--AGRTAESPE
        ..::..::: :.   .   :  :: ::. . :  :: :     . : :  :    .:: 
NP_001 PASAAAAAAAAAAAAAKGALEGAAGFALSQVGD--LAFPRFEIPAQRFALPAHYLERSPA
        60        70        80        90         100       110     

      90       100       110       120       130       140         
pF1KB8 GWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSE
        :   .     ..  :  :. ..    .  ... .  .:   : :. : ..:  ..: .:
NP_001 WWYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPD-HKELDSKSPDE
         120       130       140       150       160        170    

     150       160        170       180       190       200        
pF1KB8 MSASVSGDRSPRTEDDGV-GPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKR
       .    : ..  . : ... :  :: :.:  ..:  :. .   :.   :..::    :::.
NP_001 IILEESDSEESKKEGEAAPGAAGASVGA--AAATPGAEDWKKGAESPEKKPAC---RKKK
          180       190       200         210       220            

      210       220       230       240       250       260        
pF1KB8 SRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAA
       .:..::..:::.::  :. .::::. ::: :::::.:::::::::::::: : :: :.::
NP_001 TRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR-QLAA
     230       240       250       260       270       280         

      270           280       290       300       310          320 
pF1KB8 DL----LASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYP---YYCLPGW
       .:    :. : : . : : .: ....     . .     .   ::   .:   ::  :  
NP_001 ELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVV
      290       300       310       320       330       340        

             330   
pF1KB8 ALSTCAAAAGTQ
                   
NP_001 SSVPLLRPV   
      350          

>>NP_004378 (OMIM: 108900,187500,217095,225250,600584,61  (324 aa)
 initn: 364 init1: 265 opt: 364  Z-score: 305.7  bits: 64.9 E(85289): 2.7e-10
Smith-Waterman score: 364; 46.9% identity (65.7% similar) in 143 aa overlap (194-327:123-265)

           170       180       190       200       210          220
pF1KB8 DDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAA---FSHAQVFE
                                     :. :   : .:: .: :     ::.:::.:
NP_004 YPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYE
            100       110       120       130       140       150  

              230       240       250       260         270        
pF1KB8 LERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR-RQ-MAADLLA----SA
       :::::..:::::.::: .::. :::: ::::::::::::: :: :: .. .:..      
NP_004 LERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPP
            160       170       180       190       200       210  

          280       290       300       310       320       330    
pF1KB8 PAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ 
       : :...:: ::::: .     .    :   . :.:  :  :   ::.. ..:.       
NP_004 PPARRIAVPVLVRDGKPCLGDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTA
            220       230       240       250       260       270  

NP_004 AYPAGPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQSNSGVSTLHGIRAW
            280       290       300       310       320    

>>NP_061815 (OMIM: 142992,612109) homeobox protein HMX1   (348 aa)
 initn: 307 init1: 270 opt: 316  Z-score: 267.1  bits: 57.8 E(85289): 3.9e-08
Smith-Waterman score: 367; 35.9% identity (56.8% similar) in 287 aa overlap (76-322:40-321)

          50        60        70        80        90       100     
pF1KB8 APAVCCWRLFGERDAGALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRR
                                     :.:    .  ..::  :...:  .. . ::
NP_061 RATPARASSFLIENLLAAEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQARRRRLQRRR
      10        20        30        40        50        60         

         110            120              130         140       150 
pF1KB8 RCADARGASG-----AGLAGGSLSLGQ-------PVCELA--ASKDLEEEAAGRSDSEMS
       .   . : .:     : :. :.:.::        :   :.  ..     .: :   . .:
NP_061 QLLAGTGPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLS
      70        80        90       100       110       120         

             160            170       180       190           200  
pF1KB8 ASVSGDRSPRTEDD-----GVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEE----PAAP
        ..:   ::.: ..     :. :::   .:.   :.  .. :::. .::  :    ::: 
NP_061 PDTSDRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAA
     130       140       150       160       170       180         

                      210       220       230       240       250  
pF1KB8 KP----------RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKI
                   :::..:..::..:::.::  :. .::::. ::: :::::.::::::::
NP_061 GETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKI
     190       200       210       220       230       240         

            260       270           280       290       300        
pF1KB8 WFQNRRYKTKRRQMAADLLA---SAPAAKK-VAVKVLVRDDQRQYLPGEVLR-PPSLLP-
       :::::: : :: :.::.: :   : :.:.. : : :: ...     :. .   ::. :: 
NP_061 WFQNRRNKWKR-QLAAELEAASLSPPGAQRLVRVPVLYHESP----PAAAAAGPPATLPF
     250       260        270       280       290           300    

         310       320       330                   
pF1KB8 -LQPSYYYPYYCLPGWALSTCAAAAGTQ                
        : :.   :   : :..                           
NP_061 PLAPAAPAPPPPLLGFSGALAYPLAAFPAAASVPFLRAQMPGLV
          310       320       330       340        

>>XP_006723629 (OMIM: 604612) PREDICTED: homeobox protei  (202 aa)
 initn: 335 init1: 260 opt: 305  Z-score: 261.1  bits: 55.9 E(85289): 8.4e-08
Smith-Waterman score: 305; 54.0% identity (78.2% similar) in 87 aa overlap (205-290:56-142)

          180       190       200       210       220       230    
pF1KB8 SALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGP
                                     .:.. :. ::.::..:::::: .:::::.:
XP_006 QDSSSKSPEPSADESPDNDKETPGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAP
          30        40        50        60        70        80     

          240       250       260       270        280       290   
pF1KB8 ERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASA-PAAKKVAVKVLVRDDQRQY
       ::  ::. ..:: :::::::::.::: :: .    . ..  :. ..::: ::::: .   
XP_006 EREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEVTPLPSPRRVAVPVLVRDGKPCH
          90       100       110       120       130       140     

           300       310       320       330                    
pF1KB8 LPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ                 
                                                                
XP_006 ALKAQDLAAATFQAGIPFSAYSAQSLQHMQYNAQYSSASTPQYPTAHPLVQAQQWTW
         150       160       170       180       190       200  

>>XP_011523023 (OMIM: 142966) PREDICTED: homeobox protei  (430 aa)
 initn: 318 init1: 257 opt: 309  Z-score: 260.5  bits: 56.9 E(85289): 9.1e-08
Smith-Waterman score: 309; 35.3% identity (64.7% similar) in 167 aa overlap (108-274:95-255)

        80        90       100       110       120       130       
pF1KB8 RTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVCELAASKD
                                     : . ..:... .::  . : : :  .... 
XP_011 KSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNST
           70        80        90       100       110       120    

       140       150       160       170       180       190       
pF1KB8 LEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEE
       : ..         ..:   . :: ::  : :  :.  ..  .:.:::::.: .:   .. 
XP_011 LTKQIFPWMKESRQTSKLKNNSPGTEGCG-GGGGGGGGGGSGGSGGGGGGGGGG---DKS
          130       140       150        160       170          180

       200       210       220       230       240       250       
pF1KB8 EPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNR
        :..    .::.:.:.. ::. :::..:. .:::  :.:...:  :.:.: :.:::::::
XP_011 PPGSAA--SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNR
                190       200       210       220       230        

       260       270       280       290       300       310       
pF1KB8 RYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYC
       :.: :. : :  : .:.                                           
XP_011 RMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQ
      240       250       260       270       280       290        




333 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:48:30 2016 done: Sat Nov  5 00:48:32 2016
 Total Scan time:  6.390 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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