Result of FASTA (ccds) for pF1KB6454
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6454, 350 aa
  1>>>pF1KB6454 350 - 350 aa - 350 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6492+/-0.000918; mu= 13.8722+/- 0.055
 mean_var=61.4022+/-12.090, 0's: 0 Z-trim(105.0): 16  B-trim: 6 in 1/49
 Lambda= 0.163675
 statistics sampled from 8177 (8181) to 8177 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.251), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS42797.1 NIF3L1 gene_id:60491|Hs108|chr2        ( 350) 2279 546.8  1e-155
CCDS46485.1 NIF3L1 gene_id:60491|Hs108|chr2        ( 377) 2279 546.8 1.1e-155
CCDS46486.1 NIF3L1 gene_id:60491|Hs108|chr2        ( 285) 1421 344.2 8.1e-95


>>CCDS42797.1 NIF3L1 gene_id:60491|Hs108|chr2             (350 aa)
 initn: 2279 init1: 2279 opt: 2279  Z-score: 2909.2  bits: 546.8 E(32554): 1e-155
Smith-Waterman score: 2279; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KB6 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 CTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLDKVMSAVKGIDGVSVTSFSARTGNEEQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLDKVMSAVKGIDGVSVTSFSARTGNEEQT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RINLNCTQKALMQVVDFLSRNKQLYQKTEILSLEKPLLLHTGMGRLCTLDESVSLATMID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RINLNCTQKALMQVVDFLSRNKQLYQKTEILSLEKPLLLHTGMGRLCTLDESVSLATMID
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQGVEADLYLTGEMSHHDTLDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQGVEADLYLTGEMSHHDTLDA
              250       260       270       280       290       300

              310       320       330       340       350
pF1KB6 ASQGINVILCEHSNTERGFLSDLRDMLDSHLENKINIILSETDRDPLQVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ASQGINVILCEHSNTERGFLSDLRDMLDSHLENKINIILSETDRDPLQVV
              310       320       330       340       350

>>CCDS46485.1 NIF3L1 gene_id:60491|Hs108|chr2             (377 aa)
 initn: 2279 init1: 2279 opt: 2279  Z-score: 2908.7  bits: 546.8 E(32554): 1.1e-155
Smith-Waterman score: 2279; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:28-377)

                                          10        20        30   
pF1KB6                            MDLKALLSSLNDFASLSFAESWDNVGLLVEPSP
                                  :::::::::::::::::::::::::::::::::
CCDS46 MLSSCVRPVPTTVRFVDSLICNSSRSFMDLKALLSSLNDFASLSFAESWDNVGLLVEPSP
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KB6 PHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLVIRALENR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLVIRALENR
               70        80        90       100       110       120

           100       110       120       130       140       150   
pF1KB6 VGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLD
              130       140       150       160       170       180

           160       170       180       190       200       210   
pF1KB6 KVMSAVKGIDGVSVTSFSARTGNEEQTRINLNCTQKALMQVVDFLSRNKQLYQKTEILSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KVMSAVKGIDGVSVTSFSARTGNEEQTRINLNCTQKALMQVVDFLSRNKQLYQKTEILSL
              190       200       210       220       230       240

           220       230       240       250       260       270   
pF1KB6 EKPLLLHTGMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EKPLLLHTGMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAG
              250       260       270       280       290       300

           280       290       300       310       320       330   
pF1KB6 SGSSVLQGVEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGFLSDLRDMLDSHLEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SGSSVLQGVEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGFLSDLRDMLDSHLEN
              310       320       330       340       350       360

           340       350
pF1KB6 KINIILSETDRDPLQVV
       :::::::::::::::::
CCDS46 KINIILSETDRDPLQVV
              370       

>>CCDS46486.1 NIF3L1 gene_id:60491|Hs108|chr2             (285 aa)
 initn: 1442 init1: 1421 opt: 1421  Z-score: 1815.7  bits: 344.2 E(32554): 8.1e-95
Smith-Waterman score: 1421; 99.5% identity (99.5% similar) in 217 aa overlap (1-217:28-244)

                                          10        20        30   
pF1KB6                            MDLKALLSSLNDFASLSFAESWDNVGLLVEPSP
                                  :::::::::::::::::::::::::::::::::
CCDS46 MLSSCVRPVPTTVRFVDSLICNSSRSFMDLKALLSSLNDFASLSFAESWDNVGLLVEPSP
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KB6 PHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLVIRALENR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLVIRALENR
               70        80        90       100       110       120

           100       110       120       130       140       150   
pF1KB6 VGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLD
              130       140       150       160       170       180

           160       170       180       190       200       210   
pF1KB6 KVMSAVKGIDGVSVTSFSARTGNEEQTRINLNCTQKALMQVVDFLSRNKQLYQKTEILSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KVMSAVKGIDGVSVTSFSARTGNEEQTRINLNCTQKALMQVVDFLSRNKQLYQKTEILSL
              190       200       210       220       230       240

           220       230       240       250       260       270   
pF1KB6 EKPLLLHTGMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAG
       :: :                                                        
CCDS46 EKSLKSKSWPCVLVLGAAFCRVLRLTFTSQVRCPIMILWMLLPKE               
              250       260       270       280                    




350 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:01:20 2016 done: Fri Nov  4 23:01:21 2016
 Total Scan time:  2.690 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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