GENSCAN 1.0	Date run:  5-Nov-116	Time: 00:50:09

Sequence gi568815586r:54192377_54395248 : 202872 bp : 47.92% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   8084   8265  182  2  2   77   50   130 0.743   7.61
 1.02 Intr +  13859  13923   65  0  2   93   47    39 0.203  -1.26
 1.03 Intr +  17936  17985   50  1  2  102  110     5 0.505   1.58
 1.04 Intr +  19156  19327  172  1  1   96   98    47 0.875   6.45
 1.05 Term +  26190  26261   72  2  0   90   55    49 0.324  -0.29
 1.06 PlyA +  26593  26598    6                               1.05

 2.07 PlyA -  29181  29176    6                               1.05
 2.06 Term -  49529  49379  151  1  1  126   43   134 0.996  10.08
 2.05 Intr -  53839  53739  101  1  2   81   81    42 0.758   1.71
 2.04 Intr -  59851  59665  187  0  1  112   99    80 0.999  11.19
 2.03 Intr -  65316  65138  179  0  2  121   80   175 0.994  18.72
 2.02 Intr -  67297  67133  165  1  0  117   94   -12 0.767   2.46
 2.01 Init -  71778  71728   51  0  0   57   23    67 0.339  -1.74
 2.00 Prom -  75864  75825   40                              -8.86

 3.00 Prom +  77859  77898   40                              -5.26
 3.01 Init +  88432  88446   15  0  0   83  105    -2 0.834   1.28
 3.02 Intr +  89010  89126  117  2  0   90   83   110 0.999  11.36
 3.03 Intr +  89419  89565  147  0  0   48   81   123 0.990   8.03
 3.04 Intr +  89714  89924  211  1  1   98   89   231 0.991  22.69
 3.05 Intr +  90018  90110   93  1  0   85   69    47 0.844   2.44
 3.06 Intr +  90197  90289   93  0  0   61   68    91 0.947   4.34
 3.07 Intr +  90424  90498   75  2  0  104  115    85 0.999  12.29
 3.08 Intr +  90703  90858  156  2  0   52   66   152 0.942   9.38
 3.09 Intr +  91436  91591  156  0  0   75   86    94 0.982   7.88
 3.10 Term +  94577  94590   14  0  2  113   49     9 0.649  -2.14
 3.11 PlyA +  94692  94697    6                               1.05

 4.04 PlyA -  95723  95718    6                               1.05
 4.03 Term - 101005  99998 1008  1  0  122   49  1028 0.999  94.40
 4.02 Intr - 102851 102759   93  2  0   76  109    66 0.681   7.66
 4.01 Init - 104643 104560   84  0  0   68   98    60 0.517   5.82
 4.00 Prom - 107040 107001   40                              -9.16

 5.00 Prom + 111323 111362   40                              -2.06
 5.01 Init + 131429 131473   45  1  0   64   89    21 0.416  -1.46
 5.02 Intr + 132707 132805   99  1  0   54   54   126 0.623   6.11
 5.03 Intr + 148171 148239   69  0  0   90  100    84 0.701   9.18
 5.04 Intr + 149830 149911   82  0  1   71   48   162 0.954   9.71
 5.05 Intr + 150849 150940   92  1  2  106   78    81 0.994   8.61
 5.06 Intr + 153084 153139   56  2  2  106   83    28 0.913   1.88
 5.07 Intr + 155391 155468   78  0  0   41  110   100 0.928   6.17
 5.08 Intr + 155624 155675   52  2  1  117   98    19 0.957   4.71
 5.09 Intr + 157244 157282   39  1  0   99   80    44 0.847   3.12
 5.10 Term + 158100 158147   48  2  0  120   49    44 0.711   1.00
 5.11 PlyA + 159451 159456    6                               1.05

 6.02 PlyA - 159984 159979    6                               1.05
 6.01 Sngl - 171475 170285 1191  1  0   49   42  1079 0.967  95.31
 6.00 Prom - 175159 175120   40                              -6.56

 7.11 PlyA - 176787 176782    6                               1.05
 7.10 Term - 178110 177880  231  0  0  110   43   167 0.991  10.87
 7.09 Intr - 178345 178250   96  1  0   75   77   103 0.978   8.11
 7.08 Intr - 178720 178551  170  2  2   98   94   140 0.995  15.27
 7.07 Intr - 179266 179097  170  0  2   57   86   115 0.859   7.79
 7.06 Intr - 179744 179653   92  2  2  127   28    12 0.824  -2.11
 7.05 Intr - 181495 181470   26  2  2  107  113     3 0.762   2.44
 7.04 Intr - 181759 181597  163  1  1   58   89    45 0.824   1.15
 7.03 Intr - 183578 183468  111  2  0   57  110    52 0.775   4.88
 7.02 Intr - 192188 192052  137  0  2  101  103   129 0.898  15.99
 7.01 Init - 198868 198859   10  1  1   80  109    23 0.297   2.97

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:54192377_54395248|GENSCAN_predicted_peptide_1|180_aa
XVPSALKTEEANDISCPTWKVKVQKTEGTRLLHILRSVISCRKKHPTCRKKHSTRMTQSL
PSLLLKKARLRSWEGRIELEKGICPSGAYSEVVLGAFIRGAVDRVFGNSSRRKILKLEPT
PNLRKEKVLSRMGSVEKKARKGIPPIPARQKHKVNSKPYLLHHGQTQAHNSQRFGYTKLL

>gi568815586r:54192377_54395248|GENSCAN_predicted_CDS_1|543_bp
nnggtcccctcagcattgaagacagaagaggcaaatgacatttcatgtcccacttggaaa
gtcaaggtgcagaaaacagaggggaccagactccttcatatcctgcgcagcgtcatctcc
tgccgcaagaagcaccccacctgccgcaagaagcactccacccgcatgactcagtctttg
cccagtctcctgctgaagaaagccaggctcaggtcatgggaaggtcggattgagctggag
aaagggatatgcccatcaggtgcttactcagaggtggtgctgggtgctttcataagaggg
gcagtggacagagtctttggaaatagctcgaggagaaagattctgaagctggagcccact
ccaaatctcaggaaagagaaggtcctgagtaggatggggagtgtggaaaagaaggcccgg
aagggaataccacccatcccagcaagacaaaaacataaagtcaattcaaagccttatctt
ctgcatcatggccagactcaggcacacaacagccagcgcttcggttacacaaaactgctc
tga

>gi568815586r:54192377_54395248|GENSCAN_predicted_peptide_2|277_aa
MRVEPELDKADRYQGPYCSTAASCYGNGLGQLRSGAQAAGWGQGSCQPAKTQTWEGRPLL
LAQRERKNWGDPGPGGLSLSGGTVCDMGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQ
VEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNF
SNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAK
EANVKCPQIVIAFYEERLTWHAYPEDAENKEKETAKS

>gi568815586r:54192377_54395248|GENSCAN_predicted_CDS_2|834_bp
atgagagtagaacctgaactggacaaagcagacagataccagggaccctattgtagtact
gctgccagttgctatggcaacggactgggacagctgcgcagtggcgcccaggcagctggg
tgggggcaggggagctgccagcccgccaagacccagacctgggaggggaggcccctcctg
ttagcccagagggaaagaaagaactggggcgatccgggacctggtggccttagtctttca
ggtggaacggtgtgcgacatgggaaagaaaaccaagcggacagctgacagttcttcttca
gaggatgaggaggagtatgttgtggagaaggtgctagacaggcgcgtggttaagggacaa
gtggaatatctactgaagtggaaaggcttttctgaggagcacaatacttgggaacctgag
aaaaacttggattgccctgagctaatttctgaatttatgaaaaagtataagaagatgaag
gagggtgaaaataataaacccagggagaagtcagaaagtaacaagaggaaatccaatttc
tcaaacagtgccgatgacatcaaatctaaaaaaaagagagagcagagcaatgatatcgct
cggggctttgagagaggactggaaccagaaaagatcattggggcaacagattcctgtggt
gatttaatgttcctaatgaaatggaaagacacagatgaagctgacctggttcttgcaaaa
gaagctaatgtgaaatgtccacaaattgtgatagcattttatgaagagagactgacatgg
catgcatatcctgaggatgcggaaaacaaagagaaagaaacagcaaagagctaa

>gi568815586r:54192377_54395248|GENSCAN_predicted_peptide_3|358_aa
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG
GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGTSL

>gi568815586r:54192377_54395248|GENSCAN_predicted_CDS_3|1077_bp
atgtctaagtcagagtctcctaaagagcccgaacagctgaggaagctcttcattggaggg
ttgagctttgaaacaactgatgagagcctgaggagccattttgagcaatggggaacgctc
acggactgtgtggtaatgagagatccaaacaccaagcgctccaggggctttgggtttgtc
acatatgccactgtggaggaggtggatgcagctatgaatgcaaggccacacaaggtggat
ggaagagttgtggaaccaaagagagctgtctccagagaagattctcaaagaccaggtgcc
cacttaactgtgaaaaagatatttgttggtggcattaaagaagacactgaagaacatcac
ctaagagattattttgaacagtatggaaaaattgaagtgattgaaatcatgactgaccga
ggcagtggcaagaaaaggggctttgcctttgtaacctttgacgaccatgactccgtggat
aagattgtcattcagaaataccatactgtgaatggccacaactgtgaagttagaaaagcc
ctgtcaaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttctgga
aactttggtggtggtcgtggaggtggtttcggtgggaatgacaacttcggtcgtggagga
aacttcagtggtcgtggtggctttggtggcagccgtggtggtggtggatatggtggcagt
ggggatggctataatggatttggtaatgatggtggttatggaggaggcggccctggttac
tctggaggaagcagaggctatggaagtggtggacagggttatggaaaccagggcagtggc
tatggcgggagtggcagctatgacagctataacaacggaggcggaggcggctttggcggt
ggtagtggaagcaattttggaggtggtggaagctacaatgattttgggaattacaacaat
cagtcttcaaattttggacccatgaagggaggaaattttggaggcagaagctctggcccc
tatggcggtggaggccaatactttgcaaaaccacgaaaccaaggaacgtccttgtga

>gi568815586r:54192377_54395248|GENSCAN_predicted_peptide_4|394_aa
MSDRRDQEDLAKSTWNLLLTAGKTDARKQSRNRVIQLSTSELGEMELTWQEIMSITELQG
LNAPSEPSFEPQAPAPYLGPPPPTTYCPCSIHPDSGFPLPPPPYELPASTSHVPDPPYSY
GNMAIPVSKPLSLSGLLSEPLQDPLALLDIGLPAGPPKPQEDPESDSGLSLNYSDAESLE
LEGTEAGRRRSEYVEMYPVEYPYSLMPNSLAHSNYTLPAAETPLALEPSSGPVRAKPTAR
GEAGSRDERRALAMKIPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVA
AQNCRKRKLETIVQLERELERLTNERERLLRARGEADRTLEVMRQQLTELYRDIFQHLRD
ESGNSYSPEEYALQQAADGTIFLVPRGTKMEATD

>gi568815586r:54192377_54395248|GENSCAN_predicted_CDS_4|1185_bp
atgtctgaccgtagagatcaggaagaccttgccaaatctacttggaatctcttgctgacg
gcagggaaaacagatgcaaggaagcagagcaggaacagggtgatacagctgtccacttca
gagctaggagagatggaactgacttggcaggagatcatgtccatcaccgagctgcagggt
ctgaatgctccaagtgagccatcatttgagccccaagccccagctccataccttggacct
ccaccacccacaacttactgcccctgctcaatccacccagattctggcttcccacttcct
ccaccaccttatgagctcccagcatccacatcccatgtcccagatcccccatactcctat
ggcaacatggccataccagtctccaagccactgagcctctcaggcctgctcagtgagccg
ctccaagaccccttagccctcctggacattgggctgccagcagggccacctaagccccaa
gaagacccagaatccgactcaggattatccctcaactatagcgatgctgaatctcttgag
ctggaggggacagaggctggtcggcggcgcagcgaatatgtagagatgtacccagtggag
tacccctactcactcatgcccaactccttggcccactccaactataccttgccagctgct
gagacccccttggccttagagccctcctcaggccctgtgcgggctaagcccactgcacgg
ggggaggcagggagtcgggatgaacgtcgggccttggccatgaagattccttttcctacg
gacaagattgtcaacttgccggtagatgactttaatgagctattggcaaggtacccgctg
acagagagccagctagcgctagtccgggacatccgacgacggggcaaaaacaaggtggca
gcccagaactgccgcaagaggaagctggaaaccattgtgcagctggagcgggagctggag
cggctgaccaatgaacgggagcggcttctcagggcccgcggggaggcagaccggaccctg
gaggtcatgcgccaacagctgacagagctgtaccgtgacattttccagcaccttcgggat
gaatcaggcaacagctactctcctgaagagtacgcgctgcaacaggctgccgatgggacc
atcttccttgtgccccgggggaccaagatggaggccacagactga

>gi568815586r:54192377_54395248|GENSCAN_predicted_peptide_5|219_aa
MTRSRLTSTSASQVQAGPNGNVWPISGGVSFAAPRRHQLRGKMEALILEPSLYTVKAILI
LDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFY
VIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESD
PQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR

>gi568815586r:54192377_54395248|GENSCAN_predicted_CDS_5|660_bp
atgacgagatctcgcctcacctcaacctccgcctcccaggttcaagcggggcctaatggg
aacgtatggccaatcagcggcggcgtttcttttgcggctccacgtcggcaccagctgcgg
ggcaagatggaggcgctgattttggaaccttccctgtatactgtcaaagccatcctgatt
ctggacaatgatggagatcgactttttgccaagtactatgacgacacctaccccagtgtc
aaggagcaaaaggcctttgagaagaacattttcaacaagacccatcggactgacagtgaa
attgccctcttggaaggcctgacagtggtatacaaaagcagtatagatctctatttctat
gtgattggcagctcctatgaaaatgagctgatgcttatggctgttctgaactgtctcttc
gactcattgagccagatgctgaggaaaaatgtagaaaagcgagcactgctggagaacatg
gaggggctgttcttggctgtggatgaaattgtagatggaggggtgatcctagagagtgat
ccccagcaggtggtacaccgggtggcattaaggggtgaagatgtcccccttacggagcag
accgtgtctcaggtgctgcagtcagccaaagaacagatcaagtggtcactccttcggtga

>gi568815586r:54192377_54395248|GENSCAN_predicted_peptide_6|396_aa
MWNSSDANFSCYHESVLGYRYVAVSWGVVVAVTGTVGNVLTLLALAIQPKLRTRFNLLIA
NLTLADLLYCTLLQPFSVDTYLHLHWRTGATFCRVFGLLLFASNSVSILTLCLIALGRYL
LIAHPKLFPQVFSAKGIVLALVSTWVVGVASFAPLWPIYILVPVVCTCSFDRIRGRPYTT
ILMGIYFVLGLSSVGIFYCLIHRQVKRAAQALDQYKLRQASIHSNHVARTDEAMPGRFQE
LDSRLASGGPSEGISSEPVSAATTQTLEGDSSEVGDQINSKRAKQMAEKSPPEASAKAQP
IKGARRAPDSSSEFGKVTRMCFAVFLCFALSYIPFLLLNILDARVQAPRVVHMLAANLTW
LNGCINPVLYAAMNRQFRQAYGSILKRGPRSFHRLH

>gi568815586r:54192377_54395248|GENSCAN_predicted_CDS_6|1191_bp
atgtggaacagctctgacgccaacttctcctgctaccatgagtctgtgctgggctatcgt
tatgttgcagttagctggggggtggtggtggctgtgacaggcaccgtgggcaatgtgctc
accctactggccttggccatccagcccaagctccgtacccgattcaacctgctcatagcc
aacctcacactggctgatctcctctactgcacgctccttcagcccttctctgtggacacc
tacctccacctgcactggcgcaccggtgccaccttctgcagggtatttgggctcctcctt
tttgcctccaattctgtctccatcctgaccctctgcctcatcgcactgggacgctacctc
ctcattgcccaccctaagctttttccccaagttttcagtgccaaggggatagtgctggca
ctggtgagcacctgggttgtgggcgtggccagctttgctcccctctggcctatttatatc
ctggtacctgtagtctgcacctgcagctttgaccgcatccgaggccggccttacaccacc
atcctcatgggcatctactttgtgcttgggctcagcagtgttggcatcttctattgcctc
atccaccgccaggtcaaacgagcagcacaggcactggaccaatacaagttgcgacaggca
agcatccactccaaccatgtggccaggactgatgaggccatgcctggtcgtttccaggag
ctggacagcaggttagcatcaggaggacccagtgaggggatttcatctgagccagtcagt
gctgccaccacccagaccctggaaggggactcatcagaagtgggagaccagatcaacagc
aagagagctaagcagatggcagagaaaagccctccagaagcatctgccaaagcccagcca
attaaaggagccagaagagctccggattcttcatcggaatttgggaaggtgactcgaatg
tgttttgctgtgttcctctgctttgccctgagctacatccccttcttgctgctcaacatt
ctggatgccagagtccaggctccccgggtggtccacatgcttgctgccaacctcacctgg
ctcaatggttgcatcaaccctgtgctctatgcagccatgaaccgccaattccgccaagca
tatggctccattttaaaaagagggccccggagtttccataggctccattag

>gi568815586r:54192377_54395248|GENSCAN_predicted_peptide_7|401_aa
MILGSLSRAGPLPLLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSH
TFGGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREP
GDPAPPGSTPTNGDGVAPRPVPIPPPPPKGSFVYFLGAGQDSRKGLSWQEAQTGWQATEG
IPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKH
KTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRH
RDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSP
LSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGPILFSPY

>gi568815586r:54192377_54395248|GENSCAN_predicted_CDS_7|1206_bp
atgatcctcggcagcctgagccgggcagggcccctgcctctgctacggcagcccccgatc
atgcagcccccactggacctcaagcagatcctgcccttcccactcgagccagcccctacc
cttggcctcttcagcaactacagcaccatggaccctgtgcagaaggctgtgctctcccac
acttttgggggacccttgctcaagaccaagcggcccgtcatttcctgtaatatctgtcaa
atccgcttcaattctcagagccaggctgaggcgcactacaaaggtaatcgccacgcccga
cgagtcaaaggcattgaggctgccaagaccagaggcagggagcctggcgtccgagaacct
ggagacccagctcccccaggcagcaccccaacaaatggggatggtgtagcaccccgtcca
gtccctatacccccacccccacccaagggctctttcgtgtacttcctgggggctgggcaa
gactccaggaaggggctgtcctggcaggaagcccagactggctggcaggccactgagggc
attccggagactggtcagggtgtaaccaagggtgaaggggggactccagccccggcttcc
ttgcctgggggtagcaaggaagaggaggagaaagccaagcggctgctctactgtgctctg
tgcaaggtggctgtgaactccctgtcccagcttgaggcacataacaaaggtactaagcac
aagacaattctggaggcccgaagtgggctcgggcccatcaaagcttaccctcggctgggg
cctcccaccccgggggaaccagaggctcctgcccaggaccgaactttccactgtgagatc
tgcaatgtcaaggtcaactcggaggtccaactgaaacagcacatctccagccggcggcac
cgagacggcgtggccgggaagcccaacccactactgagccgtcacaagaagtctaggggc
gccggggagctggcgggcacgctgactttctccaaggagctgcccaagtccctggcgggc
ggcctgctccccagccccctggcggtggctgcagtgatggcagcggcagcaggctcgccg
ctgtccctgcgcccggctccagccgcacctcttctccagggaccgccgatcactcaccct
ctgcttcacccggcccccggacccatccgaactgcgcacggacccatcctcttctccccg
tactga