GENSCAN 1.0	Date run:  4-Nov-116	Time: 23:07:55

Sequence gi568815583r:41287447_41497059 : 209613 bp : 46.03% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   4387   4559  173  0  2   62   63   133 0.821   7.12
 1.02 Intr +  44710  45084  375  1  0  131   66   194 0.022  15.63
 1.03 Intr +  54245  54296   52  2  1   41   74    26 0.023  -4.59
 1.04 Intr +  54940  55008   69  0  0   65  109    53 0.745   4.48
 1.05 Intr +  61652  61795  144  1  0   62   68   103 0.903   6.18
 1.06 Intr +  63587  63683   97  1  1   19   97    77 0.320   1.28
 1.07 Intr +  70703  70812  110  0  2   34   95    75 0.591   2.80
 1.08 Intr +  77956  78143  188  0  2   60  103    21 0.557  -0.71
 1.09 Intr +  84081  84238  158  0  2   86   58   106 0.909   7.05
 1.10 Intr +  88266  88382  117  1  0   61   95    25 0.467   0.94
 1.11 Term +  94699  94820  122  2  2   49   55    55 0.171  -3.06
 1.12 PlyA +  96583  96588    6                               1.05

 2.06 PlyA -  97028  97023    6                               1.05
 2.05 Term - 100147  99998  150  1  0   45   43    93 0.601  -1.59
 2.04 Intr - 101076 101002   75  0  0   72   87    23 0.386   0.31
 2.03 Intr - 107598 107413  186  0  0   50   87   137 0.833   9.69
 2.02 Intr - 109569 109041  529  2  1   47   73   236 0.686  10.94
 2.01 Init - 116556 116483   74  0  2   88  116    45 0.917   7.84
 2.00 Prom - 125330 125291   40                              -3.46

 3.00 Prom + 127985 128024   40                              -6.76
 3.01 Init + 129670 129867  198  0  0   54   94   392 0.996  33.30
 3.02 Intr + 150875 150985  111  1  0   76   90    92 0.913   8.78
 3.03 Intr + 165455 165602  148  1  1  101  105   100 0.836  12.81
 3.04 Intr + 170226 170430  205  1  1   80  116   208 0.984  21.06
 3.05 Intr + 177325 177439  115  1  1   40   91   116 0.914   7.55
 3.06 Intr + 178695 178806  112  2  1  108  115   173 0.999  21.95
 3.07 Intr + 182811 182946  136  1  1   98   57   261 0.981  23.63
 3.08 Intr + 183726 183903  178  0  1   89   11   106 0.752   2.92
 3.09 Intr + 187174 187256   83  0  2   94   70    30 0.567   0.24
 3.10 Intr + 188079 188166   88  0  1   34   88    65 0.694   1.07
 3.11 Intr + 188266 188373  108  0  0   75   94    58 0.915   5.58
 3.12 Intr + 189000 189077   78  2  0   85  116    66 0.992   8.85
 3.13 Intr + 189719 189840  122  1  2   25   89   188 0.995  11.89
 3.14 Intr + 190012 190069   58  1  1  117   83   117 0.999  12.99
 3.15 Intr + 191102 191179   78  1  0   76   82    58 0.930   3.75
 3.16 Intr + 191657 191761  105  1  0   61   26    93 0.606   0.81
 3.17 Intr + 192768 192879  112  2  1   76   91   113 0.942  10.35
 3.18 Term + 193135 193241  107  2  2  121   53    70 0.921   5.37
 3.19 PlyA + 194824 194829    6                               1.05

 4.00 Prom + 194865 194904   40                              -8.76
 4.01 Init + 194999 195006    8  1  2   85   89     4 0.759   0.41
 4.02 Intr + 196218 196288   71  0  2   90   58    89 0.832   4.93
 4.03 Term + 198732 198949  218  1  2   89   43   133 0.614   6.21
 4.04 PlyA + 201707 201712    6                              -0.45

 5.00 Prom + 202074 202113   40                              -7.56
 5.01 Init + 206509 206970  462  0  0   92   96   766 0.954  71.50

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:41287447_41497059|GENSCAN_predicted_peptide_1|534_aa
MVLNKTVLTSDASCTSEVPPATCIFDQVATDLESPMTLLEPAFDFVGFLIVFSSFKVRWF
SATRWRKREHPLGLASAFPERFTALTGEDHGPEGPRQVPGEVHRVGEHCVTLCALEHSAP
LRLQPRRQLRAGGWLLSPQPCGAERRGPLHHLRIPLHGGRKRSLVNRPLSATTKVPPGRR
CTTPQHFWLIPIKCILHIVQATKLLKALKGYIKHEARKGNENQDESQTSASSCDETEIQI
SNQEEAERQPLGHVTKTRRRCKTVRVDPDSQNHEKQESQDLRATAKVPSPPDEHQEAENA
VSSDFKKLHEAHFKEMESIDQYIERKKKHFEEHNSMNELKQQPINKGGVRTPVPPRGRLS
VASTPISQRRSQGRSCGPASQSTLGLKGSLKRSAISAAKTGVRFSAATKDNEHKRSLTKT
PARKSAHVTVSGGTPKGEAVLGTHKLKTITGNSAAVITPFKLTTEATQTPVSNKKPVFDL
KASLSRPLNYEPHKGSEERLFPAAITSRSGERLCPAAHRLRCGERLCPAAPSGM

>gi568815583r:41287447_41497059|GENSCAN_predicted_CDS_1|1605_bp
atggtcctcaacaagactgtcctcacttcagatgccagctgtacttcggaggtaccccca
gccacctgcattttcgaccaagtggctacagatttggagagtcccatgaccctcttagaa
ccagcttttgatttcgttggttttcttattgtttttagttcctttaaagttaggtggttc
tccgccacccggtggagaaagcgggaacaccctctcgggctagcctctgcctttcccgaa
cgcttcactgcactcactggagaagaccacggccccgagggaccgcgacaggtcccaggc
gaggtgcaccgagtcggcgagcactgcgtgacactgtgcgcactggaacacagcgcacct
ctcaggctgcagccaagacggcagctgcgggccggcggctggctcctcagcccccagccc
tgcggggccgagcggcgaggaccccttcaccacctgcgtatcccactccatggaggtcgt
aaaagaagcttggtcaatcgccctctcagtgccaccacaaaagtccccccggggcggcgt
tgcacaacgccacagcatttctggctcatccccatcaaatgcatcttgcacattgtgcag
gcaaccaagttgttaaaagccttgaaaggctacattaaacatgaggcaagaaaaggaaat
gagaatcaggatgaaagtcaaacttctgcatcctcttgtgatgagactgagatacagatc
agcaaccaggaagaagctgagagacagccacttggccatgtcaccaaaacaaggagaagg
tgcaagactgtccgtgtggaccctgactcacagaatcatgaaaagcaggaaagccaggat
ctcagagctactgcaaaagttccttctccaccagacgagcaccaagaagctgagaatgct
gtttcctcagactttaagaagcttcatgaagctcattttaaggaaatggagtccattgat
caatatattgagagaaaaaagaaacattttgaagaacacaattccatgaatgaactgaag
cagcagcccatcaataagggaggggtcaggactccagtacctccaagaggaagactctct
gtggcttctactcccatcagccaacgacgctcgcaaggccggtcttgtggccctgcaagt
cagagtaccttgggtctgaaggggtcactcaagcgctctgctatctctgcagctaaaacg
ggtgtcaggttttcagctgctactaaagataatgagcataagcgttcactgaccaagact
ccagccagaaagtctgcacatgtgaccgtgtctgggggcaccccaaaaggcgaggctgtg
cttgggacacacaaattaaagaccatcacggggaattctgctgctgttattaccccattc
aagttgacaactgaggcaacgcagactccagtctccaataagaaaccagtgtttgatctt
aaagcaagtttgtctcgtcccctcaactatgaaccacacaaaggaagtgaggagcgcctc
ttcccagccgccatcacatctaggagtggggagcgtctctgcccggccgcccatcgtctg
agatgtggggagcgcctctgccccgccgccccatctgggatgtga

>gi568815583r:41287447_41497059|GENSCAN_predicted_peptide_2|337_aa
MGHGETARIKGCGKRIEESVMGAERKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKAS
SQRKTEGDLQGDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEG
HPLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSE
APQDGESTRSGYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFF
QRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKV
DGPFFLEIDFIGVFTDPAHTEEFAYENSPELNPRLFK

>gi568815583r:41287447_41497059|GENSCAN_predicted_CDS_2|1014_bp
atgggccatggagagacagcccgcattaaaggttgtgggaagagaatagaagagtcagtg
atgggggcagaaagaaaattctctaagccaacttctgccttgtatccatttttgggtatt
cgctttgcagagtattccagtagtcttcagaaaccagtggcttctcctggcaaagcctcc
tcacagaggaagactgaaggggatttgcaaggagatcaccagaaagaagttgctttggat
ataacttcttctgaggagaagcctgatgttagtttcgataaagcaattagagatgaagca
atataccattttaggcttttgaaggatgaaattgtggatcattggagaggaccggaaggc
caccctctgcatgaggtcttgctggaacaagccaaggttgtctggcaattccgggggaaa
gaagatttggataagtggacagtgacttctgataagacgattggaggcagaagtgaagtg
tttttgaaaatgggcaagaataaccaaagtgcactgctatatggaactctgagctctgag
gcgcctcaggacggggagtctacccgaagtgggtactgtgcaatgatatccaggattcca
aggggtgcttttgagaggaagatgtcttacgattggtcccagttcaatactctgtatctc
cgtgtacgtggggatggtcggccttggatggtgaatatcaaggaggacacagatttcttc
cagaggacgaatcagatgtatagttacttcatgttcacccgcgggggaccctactggcag
gaggtcaagattcctttttccaaatttttcttctctaatcgaggaagaatccgggatgtt
cagcatgagcttccgcttgataagatctcttctataggattcaccttggctgataaagtg
gatggtccattcttcctggagatagattttattggcgtgtttactgatccagctcataca
gaagaatttgcctatgaaaattctccagagcttaacccaaggctttttaaataa

>gi568815583r:41287447_41497059|GENSCAN_predicted_peptide_3|713_aa
MRGRLCVGRAAAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDSGS
DENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKI
EKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHD
GYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKK
KKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELL
AKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELN
RVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGT
RTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIK
EALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLN
ELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCK
PTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKASVGQGKDKDLNSKSASDLSED
LFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI

>gi568815583r:41287447_41497059|GENSCAN_predicted_CDS_3|2142_bp
atgcgcggtcgcctttgtgtgggtcgagcagcggcggcggcggcggcagtggcggtccca
ctggcaggcgggcaagaggggagtccgggcggcggccggcgtgggagccgggggaccacc
atggtaaagaagcggaaaggccgcgtcgtgatcgactcggacacagaggacagcggcagc
gacgagaacctggatcaggagctcttgtccctggcaaagcgaaagcgcagtgactctgag
gagaaggagccgcctgtgagtcagcctgcagcctcgtcagactcggagacgtctgacagt
gacgatgagtggacatttgggagcaataaaaataagaagaaaggaaaagccagaaaaata
gagaagaaaggaaccatgaagaaacaggccaacaaaactgcctcctcaggcagttcagac
aaagacagttcagctgagagctcagcccctgaggaaggtgaagtgtcagactctgacagc
aacagctcctcttccagttcagattcagactcttcctcagaagatgaagagttccatgat
ggctatggagaagacctcatgggagatgaggaagacagggcccgtctggaacagatgaca
gagaaagagagagagcaagaactgttcaatcgcatagagaagagggaggtgttgaaaaga
agatttgaaatcaagaaaaaactaaaaacagccaaaaagaaagaaaagaaagaaaagaag
aaaaagcaagaagaggagcaagaaaagaaaaaactgacacagattcaagaatctcaggta
acatcccacaacaaggaacggcgttccaagcgggatgagaaactagacaagaaatctcaa
gccatggaggagctaaaagcagagcgagaaaaacgaaagaacagaacagctgagctcctt
gccaaaaaacagccattaaaaaccagtgaggtctactctgatgatgaagaggaggaagag
gatgacaaatccagtgaaaagtcagaccgctcatcacgaacatcatcgtctgatgaagaa
gaggagaaagaagagatccctcccaaatcccaaccagtttccttacctgaagaattgaat
cgggttcgattatcacggcataagctagaacgctggtgtcacatgcccttctttgctaaa
actgtcacaggatgttttgtgcggattggcatcggaaaccacaacagcaaaccagtttac
cgggtcgctgagattacgggtgttgtggaaactgccaaagtttaccaactaggtggcacc
agaacaaacaaagggctgcaactacggcatggcaatgaccaacgcgtgttccgtttagag
tttgtctcaaaccaagaattcaccgaaagtgagtttatgaagtggaaagaagcgatgttc
tctgctggcatgcagttgcccactctagatgaaatcaataaaaaggaattatctattaaa
gaagctcttaattataaattcaatgatcaggacattgaagagattgtaaaagagaaagaa
aggttcagaaaagctccacccaactacgctatgaagaagactcagctactgaaggaaaag
gccatggctgaggacctgggggatcaggacaaggccaaacaaatccaagatcaactgaat
gagctggaggaacgggcagaggccctggaccgccagcggaccaagaacatatccgctatc
agttacatcaaccagcggaaccgggagtggaacattgtagagtctgagaaggcccttgtg
gctgaaagtcacaacatgaaaaaccaacagatggatccctttactcggcggcagtgcaag
cctaccatcgtttctaattccagagacccagctgttcaagctgccatcttggcccagctg
aatgcaaaatacggttctggagtgttaccagatgctccaaaggaaatgagcaaggcaagt
gtgggtcaaggcaaagataaagatttgaattctaagtcagccagtgacctctcagaagat
ctgttcaaagtacacgattttgatgtgaagattgacttacaagttcccagctcagagtca
aaggctttagccatcacctccaaggctccgccagccaaggatggggctccaaggagatct
ctgaacttggaagactacaaaaaacgacgagggcttatttga

>gi568815583r:41287447_41497059|GENSCAN_predicted_peptide_4|98_aa
MDFPVPTKVKVAIVNSLAAWFPGSLSAMDSPASLSACDAAQPFTWQARKPQVDSISFAGR
ALRRSPLGVSTTPRTGLGATLVRANGPRIPGPVRLLRR

>gi568815583r:41287447_41497059|GENSCAN_predicted_CDS_4|297_bp
atggacttccctgtgcccacaaaagtgaaagtggccatcgtcaactctttagcagcctgg
ttccccggaagcctctctgccatggatagccctgcttcgctaagcgcgtgcgatgcagca
cagcccttcacctggcaagcccggaagcctcaggttgactccatcagttttgccgggaga
gcccttcggcgctccccgcttggtgtctccaccaccccccgcaccggcctgggcgccacc
cttgtccgcgccaacggtccccgcatccctggccccgtgcgcctcctgcgccgttag

>gi568815583r:41287447_41497059|GENSCAN_predicted_peptide_5|154_aa
MARPGGARPCSPGLERAPRRSVGELRLLFEARCAAVAAAAAAGEPRARGAKRRGGQVPNG
LPRAPPAPVIPQLTVTAEEPDVPPTSPGPPERERDCLPAAGSSHLQQPRRLSTSSVSSTG
SSSLLEDSEDDLLSDSESRSRGNVQLEAGEDVGQ

>gi568815583r:41287447_41497059|GENSCAN_predicted_CDS_5|462_bp
atggcgcggccggggggcgcgaggccctgcagcccggggctggagcgggccccgcgccgg
agtgtcggggagctgcgcctgctcttcgaggcgcgctgtgcggcggtcgctgcggccgcc
gccgcgggggagccccgggcccgcggggccaagcggcgtgggggacaggtccccaacggg
cttccgcgggctcccccggccccggtgatccctcagctgaccgtgacagccgaggagccc
gacgtgcccccgaccagccctgggccgccggagcgggagagggactgcctcccggcagcg
ggctcttcgcacctgcagcagccgcgccgcctttccacctcgtcggtctcctccactggc
tcctcgtcgctgctcgaggactcggaggacgacctgctgagcgacagtgagagccggagc
cgcggcaacgtgcagctggaagcgggcgaggacgtgggtcag