Result of FASTA (omim) for pF1KB7807
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7807, 525 aa
  1>>>pF1KB7807 525 - 525 aa - 525 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4892+/-0.000317; mu= 0.9056+/- 0.020
 mean_var=247.9733+/-51.333, 0's: 0 Z-trim(123.8): 24  B-trim: 183 in 1/58
 Lambda= 0.081446
 statistics sampled from 44310 (44335) to 44310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.52), width:  16
 Scan time:  8.720

The best scores are:                                      opt bits E(85289)
NP_005958 (OMIM: 602381) NGFI-A-binding protein 2  ( 525) 3546 429.4 1.3e-119
NP_001317234 (OMIM: 602381) NGFI-A-binding protein ( 461) 2865 349.4 1.4e-95
NP_001308244 (OMIM: 600800) NGFI-A-binding protein ( 457)  617 85.2 4.6e-16
XP_016859664 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 457)  617 85.2 4.6e-16
XP_005246644 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 457)  617 85.2 4.6e-16
XP_005246643 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 486)  617 85.2 4.8e-16
XP_016859662 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 486)  617 85.2 4.8e-16
XP_016859660 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 486)  617 85.2 4.8e-16
XP_016859663 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 486)  617 85.2 4.8e-16
NP_001308243 (OMIM: 600800) NGFI-A-binding protein ( 486)  617 85.2 4.8e-16
XP_016859661 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 486)  617 85.2 4.8e-16
XP_016859665 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 487)  617 85.2 4.8e-16
XP_005246640 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 487)  617 85.2 4.8e-16
XP_016859659 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 487)  617 85.2 4.8e-16
NP_005957 (OMIM: 600800) NGFI-A-binding protein 1  ( 487)  617 85.2 4.8e-16
XP_005246639 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 487)  617 85.2 4.8e-16
NP_001308242 (OMIM: 600800) NGFI-A-binding protein ( 487)  617 85.2 4.8e-16
NP_001308241 (OMIM: 600800) NGFI-A-binding protein ( 487)  617 85.2 4.8e-16
XP_011509521 (OMIM: 600800) PREDICTED: NGFI-A-bind ( 487)  617 85.2 4.8e-16


>>NP_005958 (OMIM: 602381) NGFI-A-binding protein 2 isof  (525 aa)
 initn: 3546 init1: 3546 opt: 3546  Z-score: 2268.6  bits: 429.4 E(85289): 1.3e-119
Smith-Waterman score: 3546; 100.0% identity (100.0% similar) in 525 aa overlap (1-525:1-525)

               10        20        30        40        50        60
pF1KB7 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 DGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVSHDRVGRLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVSHDRVGRLSP
              430       440       450       460       470       480

              490       500       510       520     
pF1KB7 CVPAKPPLAEFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
       :::::::::::::::::::::::::::::::::::::::::::::
NP_005 CVPAKPPLAEFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
              490       500       510       520     

>>NP_001317234 (OMIM: 602381) NGFI-A-binding protein 2 i  (461 aa)
 initn: 2849 init1: 2849 opt: 2865  Z-score: 1836.9  bits: 349.4 E(85289): 1.4e-95
Smith-Waterman score: 2956; 87.8% identity (87.8% similar) in 525 aa overlap (1-525:1-461)

               10        20        30        40        50        60
pF1KB7 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 DGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVSHDRVGRLSP
       :::::                                                       
NP_001 DGHLQ-------------------------------------------------------
                                                                   

              490       500       510       520     
pF1KB7 CVPAKPPLAEFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
                ::::::::::::::::::::::::::::::::::::
NP_001 ---------EFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
                  430       440       450       460 

>>NP_001308244 (OMIM: 600800) NGFI-A-binding protein 1 i  (457 aa)
 initn: 1094 init1: 576 opt: 617  Z-score: 409.4  bits: 85.2 E(85289): 4.6e-16
Smith-Waterman score: 1069; 51.4% identity (71.4% similar) in 364 aa overlap (33-385:2-339)

             10        20        30        40        50        60  
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
                                     : :::::::::::::.::.::::::...::
NP_001                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                            10        20        30 

             70        80        90       100       110       120  
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
NP_001 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
              40        50        60        70        80        90 

            130       140       150       160               170    
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
NP_001 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
             100       110           120       130       140       

             180       190       200       210       220       230 
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
NP_001 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       150       160       170        180              190         

             240       250       260       270       280       290 
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
NP_001 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                   200       210       220       230       240     

             300       310       320       330       340       350 
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
NP_001 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
         250       260       270       280       290       300     

             360       370       380       390       400       410 
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
       :: ::  . . .. .  :      :..: :  :.                          
NP_001 REVTYKYTYRTTKSKCGERDELSPKRIKVEQPEKVMAKQMEFLCNQAGYERLQHAERRLS
         310       320       330       340       350       360     

             420       430       440       450       460       470 
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
                                                                   
NP_001 AGLYRQSSEEHSPNGLTSDNSDGQGERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKS
         370       380       390       400       410       420     

>>XP_016859664 (OMIM: 600800) PREDICTED: NGFI-A-binding   (457 aa)
 initn: 1094 init1: 576 opt: 617  Z-score: 409.4  bits: 85.2 E(85289): 4.6e-16
Smith-Waterman score: 1069; 51.4% identity (71.4% similar) in 364 aa overlap (33-385:2-339)

             10        20        30        40        50        60  
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
                                     : :::::::::::::.::.::::::...::
XP_016                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                            10        20        30 

             70        80        90       100       110       120  
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
XP_016 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
              40        50        60        70        80        90 

            130       140       150       160               170    
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
XP_016 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
             100       110           120       130       140       

             180       190       200       210       220       230 
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
XP_016 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       150       160       170        180              190         

             240       250       260       270       280       290 
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
XP_016 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                   200       210       220       230       240     

             300       310       320       330       340       350 
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
XP_016 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
         250       260       270       280       290       300     

             360       370       380       390       400       410 
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
       :: ::  . . .. .  :      :..: :  :.                          
XP_016 REVTYKYTYRTTKSKCGERDELSPKRIKVEQPEKVMAKQMEFLCNQAGYERLQHAERRLS
         310       320       330       340       350       360     

             420       430       440       450       460       470 
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
                                                                   
XP_016 AGLYRQSSEEHSPNGLTSDNSDGQGERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKS
         370       380       390       400       410       420     

>>XP_005246644 (OMIM: 600800) PREDICTED: NGFI-A-binding   (457 aa)
 initn: 1094 init1: 576 opt: 617  Z-score: 409.4  bits: 85.2 E(85289): 4.6e-16
Smith-Waterman score: 1069; 51.4% identity (71.4% similar) in 364 aa overlap (33-385:2-339)

             10        20        30        40        50        60  
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
                                     : :::::::::::::.::.::::::...::
XP_005                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                            10        20        30 

             70        80        90       100       110       120  
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
XP_005 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
              40        50        60        70        80        90 

            130       140       150       160               170    
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
XP_005 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
             100       110           120       130       140       

             180       190       200       210       220       230 
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
XP_005 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       150       160       170        180              190         

             240       250       260       270       280       290 
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
XP_005 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                   200       210       220       230       240     

             300       310       320       330       340       350 
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
XP_005 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
         250       260       270       280       290       300     

             360       370       380       390       400       410 
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
       :: ::  . . .. .  :      :..: :  :.                          
XP_005 REVTYKYTYRTTKSKCGERDELSPKRIKVEQPEKVMAKQMEFLCNQAGYERLQHAERRLS
         310       320       330       340       350       360     

             420       430       440       450       460       470 
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
                                                                   
XP_005 AGLYRQSSEEHSPNGLTSDNSDGQGERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKS
         370       380       390       400       410       420     

>>XP_005246643 (OMIM: 600800) PREDICTED: NGFI-A-binding   (486 aa)
 initn: 1089 init1: 576 opt: 617  Z-score: 409.1  bits: 85.2 E(85289): 4.8e-16
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (33-391:2-342)

             10        20        30        40        50        60  
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
                                     : :::::::::::::.::.::::::...::
XP_005                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                            10        20        30 

             70        80        90       100       110       120  
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
XP_005 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
              40        50        60        70        80        90 

            130       140       150       160               170    
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
XP_005 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
             100       110           120       130       140       

             180       190       200       210       220       230 
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
XP_005 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       150       160       170        180              190         

             240       250       260       270       280       290 
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
XP_005 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                   200       210       220       230       240     

             300       310       320       330       340       350 
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
XP_005 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
         250       260       270       280       290       300     

             360       370       380       390       400       410 
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
       :: ::  . . .. .  :      :..: : :    :..:                    
XP_005 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
         310       320       330          340       350       360  

             420       430       440       450       460       470 
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
                                                                   
XP_005 SSQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGERP
            370       380       390       400       410       420  

>>XP_016859662 (OMIM: 600800) PREDICTED: NGFI-A-binding   (486 aa)
 initn: 1089 init1: 576 opt: 617  Z-score: 409.1  bits: 85.2 E(85289): 4.8e-16
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (33-391:2-342)

             10        20        30        40        50        60  
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
                                     : :::::::::::::.::.::::::...::
XP_016                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                            10        20        30 

             70        80        90       100       110       120  
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
XP_016 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
              40        50        60        70        80        90 

            130       140       150       160               170    
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
XP_016 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
             100       110           120       130       140       

             180       190       200       210       220       230 
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
XP_016 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       150       160       170        180              190         

             240       250       260       270       280       290 
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
XP_016 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                   200       210       220       230       240     

             300       310       320       330       340       350 
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
XP_016 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
         250       260       270       280       290       300     

             360       370       380       390       400       410 
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
       :: ::  . . .. .  :      :..: : :    :..:                    
XP_016 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
         310       320       330          340       350       360  

             420       430       440       450       460       470 
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
                                                                   
XP_016 SSQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGERP
            370       380       390       400       410       420  

>>XP_016859660 (OMIM: 600800) PREDICTED: NGFI-A-binding   (486 aa)
 initn: 1089 init1: 576 opt: 617  Z-score: 409.1  bits: 85.2 E(85289): 4.8e-16
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (33-391:2-342)

             10        20        30        40        50        60  
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
                                     : :::::::::::::.::.::::::...::
XP_016                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                            10        20        30 

             70        80        90       100       110       120  
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
XP_016 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
              40        50        60        70        80        90 

            130       140       150       160               170    
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
XP_016 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
             100       110           120       130       140       

             180       190       200       210       220       230 
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
XP_016 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       150       160       170        180              190         

             240       250       260       270       280       290 
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
XP_016 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                   200       210       220       230       240     

             300       310       320       330       340       350 
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
XP_016 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
         250       260       270       280       290       300     

             360       370       380       390       400       410 
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
       :: ::  . . .. .  :      :..: : :    :..:                    
XP_016 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
         310       320       330          340       350       360  

             420       430       440       450       460       470 
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
                                                                   
XP_016 SSQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGERP
            370       380       390       400       410       420  

>>XP_016859663 (OMIM: 600800) PREDICTED: NGFI-A-binding   (486 aa)
 initn: 1089 init1: 576 opt: 617  Z-score: 409.1  bits: 85.2 E(85289): 4.8e-16
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (33-391:2-342)

             10        20        30        40        50        60  
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
                                     : :::::::::::::.::.::::::...::
XP_016                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                            10        20        30 

             70        80        90       100       110       120  
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
XP_016 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
              40        50        60        70        80        90 

            130       140       150       160               170    
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
XP_016 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
             100       110           120       130       140       

             180       190       200       210       220       230 
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
XP_016 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       150       160       170        180              190         

             240       250       260       270       280       290 
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
XP_016 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                   200       210       220       230       240     

             300       310       320       330       340       350 
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
XP_016 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
         250       260       270       280       290       300     

             360       370       380       390       400       410 
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
       :: ::  . . .. .  :      :..: : :    :..:                    
XP_016 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
         310       320       330          340       350       360  

             420       430       440       450       460       470 
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
                                                                   
XP_016 SSQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGERP
            370       380       390       400       410       420  

>>NP_001308243 (OMIM: 600800) NGFI-A-binding protein 1 i  (486 aa)
 initn: 1089 init1: 576 opt: 617  Z-score: 409.1  bits: 85.2 E(85289): 4.8e-16
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (33-391:2-342)

             10        20        30        40        50        60  
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
                                     : :::::::::::::.::.::::::...::
NP_001                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                            10        20        30 

             70        80        90       100       110       120  
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
NP_001 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
              40        50        60        70        80        90 

            130       140       150       160               170    
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
NP_001 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
             100       110           120       130       140       

             180       190       200       210       220       230 
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
NP_001 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       150       160       170        180              190         

             240       250       260       270       280       290 
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
NP_001 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                   200       210       220       230       240     

             300       310       320       330       340       350 
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
NP_001 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
         250       260       270       280       290       300     

             360       370       380       390       400       410 
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
       :: ::  . . .. .  :      :..: : :    :..:                    
NP_001 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
         310       320       330          340       350       360  

             420       430       440       450       460       470 
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
                                                                   
NP_001 SSQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGERP
            370       380       390       400       410       420  




525 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:24:28 2016 done: Fri Nov  4 22:24:29 2016
 Total Scan time:  8.720 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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