Result of FASTA (omim) for pF1KE0473
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0473, 197 aa
  1>>>pF1KE0473 197 - 197 aa - 197 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6519+/-0.000368; mu= 0.7779+/- 0.023
 mean_var=235.5337+/-47.335, 0's: 0 Z-trim(121.8): 55  B-trim: 0 in 0/60
 Lambda= 0.083569
 statistics sampled from 38888 (38943) to 38888 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.457), width:  16
 Scan time:  6.040

The best scores are:                                      opt bits E(85289)
XP_005257448 (OMIM: 160770) PREDICTED: myosin ligh ( 197) 1315 170.1   2e-42
NP_002467 (OMIM: 160770) myosin light chain 4 [Hom ( 197) 1315 170.1   2e-42
NP_001002841 (OMIM: 160770) myosin light chain 4 [ ( 197) 1315 170.1   2e-42
NP_000249 (OMIM: 160790,608751) myosin light chain ( 195) 1056 138.9   5e-33
XP_016880173 (OMIM: 160770) PREDICTED: myosin ligh ( 228)  938 124.8 1.1e-28
XP_016880172 (OMIM: 160770) PREDICTED: myosin ligh ( 228)  938 124.8 1.1e-28
XP_011523141 (OMIM: 160770) PREDICTED: myosin ligh ( 228)  938 124.8 1.1e-28
NP_524144 (OMIM: 160780) myosin light chain 1/3, s ( 194)  905 120.7 1.5e-27
NP_002466 (OMIM: 609930) myosin light chain 6B [Ho ( 208)  834 112.2   6e-25
NP_001186558 (OMIM: 609930) myosin light chain 6B  ( 208)  834 112.2   6e-25
NP_066299 (OMIM: 609931) myosin light polypeptide  ( 151)  790 106.7 1.9e-23
NP_524147 (OMIM: 609931) myosin light polypeptide  ( 151)  761 103.2 2.1e-22
NP_524146 (OMIM: 160780) myosin light chain 1/3, s ( 150)  740 100.7 1.2e-21
NP_005176 (OMIM: 114184) calmodulin-like protein 3 ( 149)  364 55.4 5.3e-08
NP_001292553 (OMIM: 114182,616249) calmodulin isof ( 197)  366 55.7 5.5e-08
NP_008819 (OMIM: 114180,614916,616247) calmodulin  ( 149)  360 54.9 7.5e-08
NP_001316851 (OMIM: 114183) calmodulin isoform 1 [ ( 149)  360 54.9 7.5e-08
NP_001734 (OMIM: 114182,616249) calmodulin isoform ( 149)  360 54.9 7.5e-08
NP_005175 (OMIM: 114183) calmodulin isoform 1 [Hom ( 149)  360 54.9 7.5e-08
XP_006720321 (OMIM: 114180,614916,616247) PREDICTE ( 150)  360 54.9 7.5e-08
NP_001316852 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  265 43.3 0.00017
NP_001316850 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  265 43.3 0.00017
NP_001292554 (OMIM: 114182,616249) calmodulin isof ( 113)  265 43.3 0.00017
NP_001316853 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  265 43.3 0.00017
NP_001316855 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  265 43.3 0.00017
NP_001316854 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  265 43.3 0.00017
NP_001292555 (OMIM: 114182,616249) calmodulin isof ( 113)  265 43.3 0.00017
NP_003270 (OMIM: 191039) troponin C, skeletal musc ( 160)  263 43.2 0.00026
XP_011527333 (OMIM: 191039) PREDICTED: troponin C, ( 145)  259 42.7 0.00034
NP_619650 (OMIM: 610171) calmodulin-like protein 6 ( 181)  243 40.9  0.0015
NP_001317242 (OMIM: 610171) calmodulin-like protei ( 164)  242 40.7  0.0015
XP_005244786 (OMIM: 610171) PREDICTED: calmodulin- ( 203)  243 40.9  0.0016
NP_003271 (OMIM: 191040,611879,613243) troponin C, ( 161)  239 40.3  0.0019
NP_004057 (OMIM: 603187) centrin-1 [Homo sapiens]  ( 172)  224 38.6  0.0072


>>XP_005257448 (OMIM: 160770) PREDICTED: myosin light ch  (197 aa)
 initn: 1315 init1: 1315 opt: 1315  Z-score: 882.7  bits: 170.1 E(85289): 2e-42
Smith-Waterman score: 1315; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KE0 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
              130       140       150       160       170       180

              190       
pF1KE0 ANGCINYEAFVKHIMSG
       :::::::::::::::::
XP_005 ANGCINYEAFVKHIMSG
              190       

>>NP_002467 (OMIM: 160770) myosin light chain 4 [Homo sa  (197 aa)
 initn: 1315 init1: 1315 opt: 1315  Z-score: 882.7  bits: 170.1 E(85289): 2e-42
Smith-Waterman score: 1315; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KE0 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
              130       140       150       160       170       180

              190       
pF1KE0 ANGCINYEAFVKHIMSG
       :::::::::::::::::
NP_002 ANGCINYEAFVKHIMSG
              190       

>>NP_001002841 (OMIM: 160770) myosin light chain 4 [Homo  (197 aa)
 initn: 1315 init1: 1315 opt: 1315  Z-score: 882.7  bits: 170.1 E(85289): 2e-42
Smith-Waterman score: 1315; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KE0 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
              130       140       150       160       170       180

              190       
pF1KE0 ANGCINYEAFVKHIMSG
       :::::::::::::::::
NP_001 ANGCINYEAFVKHIMSG
              190       

>>NP_000249 (OMIM: 160790,608751) myosin light chain 3 [  (195 aa)
 initn: 987 init1: 987 opt: 1056  Z-score: 714.0  bits: 138.9 E(85289): 5e-33
Smith-Waterman score: 1056; 80.6% identity (90.8% similar) in 196 aa overlap (1-196:1-194)

               10        20        30        40        50        60
pF1KE0 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
       ::::::::::. :: ::  :::::: : : :: :::  :: ...::.:: .:::::::::
NP_000 MAPKKPEPKKDDAKAAPKAAPAPAP-P-PEPERPKEVEFDASKIKIEFTPEQIEEFKEAF
               10        20          30        40        50        

               70        80        90       100       110       120
pF1KE0 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
        ::::::  :::::::::::::::::::::.::::::::::. ::.:.::.:::::::.:
NP_000 MLFDRTPKCEMKITYGQCGDVLRALGQNPTQAEVLRVLGKPRQEELNTKMMDFETFLPML
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE0 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
       ::::.::. ::::::::::::::::.::::::::::::::::::..:: :::.:.:::::
NP_000 QHISKNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQED
      120       130       140       150       160       170        

              190       
pF1KE0 ANGCINYEAFVKHIMSG
       .::::::::::::::: 
NP_000 SNGCINYEAFVKHIMSS
      180       190     

>>XP_016880173 (OMIM: 160770) PREDICTED: myosin light ch  (228 aa)
 initn: 1301 init1: 938 opt: 938  Z-score: 636.2  bits: 124.8 E(85289): 1.1e-28
Smith-Waterman score: 1243; 86.4% identity (86.4% similar) in 228 aa overlap (1-197:1-228)

               10        20        30        40        50          
pF1KE0 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIE------
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
XP_016 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEGEYGQP
               10        20        30        40        50        60

                                    60        70        80         
pF1KE0 -------------------------EFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNP
                                :::::::::::::::::::::::::::::::::::
XP_016 HLSVSIALSWRRRRRRKKRRSSCPHEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNP
               70        80        90       100       110       120

      90       100       110       120       130       140         
pF1KE0 TNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGT
              130       140       150       160       170       180

     150       160       170       180       190       
pF1KE0 VMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMSG
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMSG
              190       200       210       220        

>>XP_016880172 (OMIM: 160770) PREDICTED: myosin light ch  (228 aa)
 initn: 1301 init1: 938 opt: 938  Z-score: 636.2  bits: 124.8 E(85289): 1.1e-28
Smith-Waterman score: 1243; 86.4% identity (86.4% similar) in 228 aa overlap (1-197:1-228)

               10        20        30        40        50          
pF1KE0 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIE------
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
XP_016 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEGEYGQP
               10        20        30        40        50        60

                                    60        70        80         
pF1KE0 -------------------------EFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNP
                                :::::::::::::::::::::::::::::::::::
XP_016 HLSVSIALSWRRRRRRKKRRSSCPHEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNP
               70        80        90       100       110       120

      90       100       110       120       130       140         
pF1KE0 TNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGT
              130       140       150       160       170       180

     150       160       170       180       190       
pF1KE0 VMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMSG
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMSG
              190       200       210       220        

>>XP_011523141 (OMIM: 160770) PREDICTED: myosin light ch  (228 aa)
 initn: 1301 init1: 938 opt: 938  Z-score: 636.2  bits: 124.8 E(85289): 1.1e-28
Smith-Waterman score: 1243; 86.4% identity (86.4% similar) in 228 aa overlap (1-197:1-228)

               10        20        30        40        50          
pF1KE0 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIE------
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
XP_011 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEGEYGQP
               10        20        30        40        50        60

                                    60        70        80         
pF1KE0 -------------------------EFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNP
                                :::::::::::::::::::::::::::::::::::
XP_011 HLSVSIALSWRRRRRRKKRRSSCPHEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNP
               70        80        90       100       110       120

      90       100       110       120       130       140         
pF1KE0 TNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGT
              130       140       150       160       170       180

     150       160       170       180       190       
pF1KE0 VMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMSG
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMSG
              190       200       210       220        

>>NP_524144 (OMIM: 160780) myosin light chain 1/3, skele  (194 aa)
 initn: 721 init1: 721 opt: 905  Z-score: 615.6  bits: 120.7 E(85289): 1.5e-27
Smith-Waterman score: 905; 71.9% identity (85.2% similar) in 196 aa overlap (1-196:1-193)

               10        20        30        40        50        60
pF1KE0 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
       ::::: . :: .:  : ::::::::::::::  :::  .: ...::.:. .: .::::::
NP_524 MAPKK-DVKKPVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAF
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE0 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
        ::::  ::. ::: .: :::::::: ::::::: .:::.:. ::.:.: ..:: :::..
NP_524 LLFDR--TGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMM
      60          70        80        90       100       110       

              130       140       150       160       170       180
pF1KE0 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
       : :: ::.:.:::::::::::::::.:::::::::::::::::::: : ::: :.:::::
NP_524 QAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQED
       120       130       140       150       160       170       

              190       
pF1KE0 ANGCINYEAFVKHIMSG
       .::::::::::::::: 
NP_524 SNGCINYEAFVKHIMSI
       180       190    

>>NP_002466 (OMIM: 609930) myosin light chain 6B [Homo s  (208 aa)
 initn: 982 init1: 649 opt: 834  Z-score: 568.9  bits: 112.2 E(85289): 6e-25
Smith-Waterman score: 834; 65.8% identity (83.4% similar) in 199 aa overlap (3-196:12-207)

                        10        20         30            40      
pF1KE0          MAPKKPEPKKEAAKPAPAPAPAPAPAPA-PA-PEAPK---EPAFDPKSVKI
                  :  :  .: ::::: : :: :: . : :: :.::.   ::  : ..: :
NP_002 MPPKKDVPVKKPAGPSISKPAAKPAAAGAP-PAKTKAEPAVPQAPQKTQEPPVDLSKVVI
               10        20        30         40        50         

         50        60        70        80        90       100      
pF1KE0 DFTADQIEEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEM
       .:. ::.::::::: ::::.  :. :: :.:::::.:::::::::::::.:::.:: .:.
NP_002 EFNKDQLEEFKEAFELFDRV--GDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEL
      60        70          80        90       100       110       

        110       120       130       140       150       160      
pF1KE0 NVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKM
       . . .:::::::.:: ...:. ::::::..::.::::::.:: ::::::::::.::::::
NP_002 KSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKM
       120       130       140       150       160       170       

        170       180       190       
pF1KE0 TEAEVEQLLAGQEDANGCINYEAFVKHIMSG
       :: ::: .:::.::.:::::::::.:::.: 
NP_002 TEEEVETVLAGHEDSNGCINYEAFLKHILSV
       180       190       200        

>>NP_001186558 (OMIM: 609930) myosin light chain 6B [Hom  (208 aa)
 initn: 982 init1: 649 opt: 834  Z-score: 568.9  bits: 112.2 E(85289): 6e-25
Smith-Waterman score: 834; 65.8% identity (83.4% similar) in 199 aa overlap (3-196:12-207)

                        10        20         30            40      
pF1KE0          MAPKKPEPKKEAAKPAPAPAPAPAPAPA-PA-PEAPK---EPAFDPKSVKI
                  :  :  .: ::::: : :: :: . : :: :.::.   ::  : ..: :
NP_001 MPPKKDVPVKKPAGPSISKPAAKPAAAGAP-PAKTKAEPAVPQAPQKTQEPPVDLSKVVI
               10        20        30         40        50         

         50        60        70        80        90       100      
pF1KE0 DFTADQIEEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEM
       .:. ::.::::::: ::::.  :. :: :.:::::.:::::::::::::.:::.:: .:.
NP_001 EFNKDQLEEFKEAFELFDRV--GDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEL
      60        70          80        90       100       110       

        110       120       130       140       150       160      
pF1KE0 NVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKM
       . . .:::::::.:: ...:. ::::::..::.::::::.:: ::::::::::.::::::
NP_001 KSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKM
       120       130       140       150       160       170       

        170       180       190       
pF1KE0 TEAEVEQLLAGQEDANGCINYEAFVKHIMSG
       :: ::: .:::.::.:::::::::.:::.: 
NP_001 TEEEVETVLAGHEDSNGCINYEAFLKHILSV
       180       190       200        




197 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:01:43 2016 done: Thu Nov  3 06:01:44 2016
 Total Scan time:  6.040 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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