Result of FASTA (ccds) for pF1KE0473
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0473, 197 aa
  1>>>pF1KE0473 197 - 197 aa - 197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7743+/-0.000946; mu= 0.6579+/- 0.058
 mean_var=240.3979+/-47.944, 0's: 0 Z-trim(114.4): 34  B-trim: 10 in 1/51
 Lambda= 0.082720
 statistics sampled from 14948 (14981) to 14948 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.46), width:  16
 Scan time:  1.460

The best scores are:                                      opt bits E(32554)
CCDS11510.1 MYL4 gene_id:4635|Hs108|chr17          ( 197) 1315 168.5 2.4e-42
CCDS2746.1 MYL3 gene_id:4634|Hs108|chr3            ( 195) 1056 137.6 4.7e-33
CCDS2390.1 MYL1 gene_id:4632|Hs108|chr2            ( 194)  905 119.6 1.3e-27
CCDS8905.1 MYL6B gene_id:140465|Hs108|chr12        ( 208)  834 111.1 4.7e-25
CCDS8906.1 MYL6 gene_id:4637|Hs108|chr12           ( 151)  790 105.8 1.4e-23
CCDS31834.1 MYL6 gene_id:4637|Hs108|chr12          ( 151)  761 102.3 1.6e-22
CCDS2391.1 MYL1 gene_id:4632|Hs108|chr2            ( 150)  740 99.8 8.8e-22


>>CCDS11510.1 MYL4 gene_id:4635|Hs108|chr17               (197 aa)
 initn: 1315 init1: 1315 opt: 1315  Z-score: 873.9  bits: 168.5 E(32554): 2.4e-42
Smith-Waterman score: 1315; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KE0 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
              130       140       150       160       170       180

              190       
pF1KE0 ANGCINYEAFVKHIMSG
       :::::::::::::::::
CCDS11 ANGCINYEAFVKHIMSG
              190       

>>CCDS2746.1 MYL3 gene_id:4634|Hs108|chr3                 (195 aa)
 initn: 987 init1: 987 opt: 1056  Z-score: 706.9  bits: 137.6 E(32554): 4.7e-33
Smith-Waterman score: 1056; 80.6% identity (90.8% similar) in 196 aa overlap (1-196:1-194)

               10        20        30        40        50        60
pF1KE0 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
       ::::::::::. :: ::  :::::: : : :: :::  :: ...::.:: .:::::::::
CCDS27 MAPKKPEPKKDDAKAAPKAAPAPAP-P-PEPERPKEVEFDASKIKIEFTPEQIEEFKEAF
               10        20          30        40        50        

               70        80        90       100       110       120
pF1KE0 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
        ::::::  :::::::::::::::::::::.::::::::::. ::.:.::.:::::::.:
CCDS27 MLFDRTPKCEMKITYGQCGDVLRALGQNPTQAEVLRVLGKPRQEELNTKMMDFETFLPML
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE0 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
       ::::.::. ::::::::::::::::.::::::::::::::::::..:: :::.:.:::::
CCDS27 QHISKNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQED
      120       130       140       150       160       170        

              190       
pF1KE0 ANGCINYEAFVKHIMSG
       .::::::::::::::: 
CCDS27 SNGCINYEAFVKHIMSS
      180       190     

>>CCDS2390.1 MYL1 gene_id:4632|Hs108|chr2                 (194 aa)
 initn: 721 init1: 721 opt: 905  Z-score: 609.5  bits: 119.6 E(32554): 1.3e-27
Smith-Waterman score: 905; 71.9% identity (85.2% similar) in 196 aa overlap (1-196:1-193)

               10        20        30        40        50        60
pF1KE0 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
       ::::: . :: .:  : ::::::::::::::  :::  .: ...::.:. .: .::::::
CCDS23 MAPKK-DVKKPVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAF
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE0 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
        ::::  ::. ::: .: :::::::: ::::::: .:::.:. ::.:.: ..:: :::..
CCDS23 LLFDR--TGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMM
      60          70        80        90       100       110       

              130       140       150       160       170       180
pF1KE0 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
       : :: ::.:.:::::::::::::::.:::::::::::::::::::: : ::: :.:::::
CCDS23 QAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQED
       120       130       140       150       160       170       

              190       
pF1KE0 ANGCINYEAFVKHIMSG
       .::::::::::::::: 
CCDS23 SNGCINYEAFVKHIMSI
       180       190    

>>CCDS8905.1 MYL6B gene_id:140465|Hs108|chr12             (208 aa)
 initn: 982 init1: 649 opt: 834  Z-score: 563.3  bits: 111.1 E(32554): 4.7e-25
Smith-Waterman score: 834; 65.8% identity (83.4% similar) in 199 aa overlap (3-196:12-207)

                        10        20         30            40      
pF1KE0          MAPKKPEPKKEAAKPAPAPAPAPAPAPA-PA-PEAPK---EPAFDPKSVKI
                  :  :  .: ::::: : :: :: . : :: :.::.   ::  : ..: :
CCDS89 MPPKKDVPVKKPAGPSISKPAAKPAAAGAP-PAKTKAEPAVPQAPQKTQEPPVDLSKVVI
               10        20        30         40        50         

         50        60        70        80        90       100      
pF1KE0 DFTADQIEEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEM
       .:. ::.::::::: ::::.  :. :: :.:::::.:::::::::::::.:::.:: .:.
CCDS89 EFNKDQLEEFKEAFELFDRV--GDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEL
      60        70          80        90       100       110       

        110       120       130       140       150       160      
pF1KE0 NVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKM
       . . .:::::::.:: ...:. ::::::..::.::::::.:: ::::::::::.::::::
CCDS89 KSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKM
       120       130       140       150       160       170       

        170       180       190       
pF1KE0 TEAEVEQLLAGQEDANGCINYEAFVKHIMSG
       :: ::: .:::.::.:::::::::.:::.: 
CCDS89 TEEEVETVLAGHEDSNGCINYEAFLKHILSV
       180       190       200        

>>CCDS8906.1 MYL6 gene_id:4637|Hs108|chr12                (151 aa)
 initn: 704 init1: 704 opt: 790  Z-score: 536.8  bits: 105.8 E(32554): 1.4e-23
Smith-Waterman score: 790; 77.5% identity (92.7% similar) in 151 aa overlap (47-197:3-151)

         20        30        40        50        60        70      
pF1KE0 PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAFSLFDRTPTGEMKITYG
                                     ::: ::  ::::::.:::::  :. :: :.
CCDS89                             MCDFTEDQTAEFKEAFQLFDRT--GDGKILYS
                                           10        20          30

         80        90       100       110       120       130      
pF1KE0 QCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFV
       :::::.:::::::::::::.:::.:: .:::::.:::: :::.:: ...::.::::::.:
CCDS89 QCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYV
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KE0 EGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMS
       :::::::::.::::::::.::::.:::::::: :::.:.::.::.::::::::::.::.:
CCDS89 EGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEAFVRHILS
              100       110       120       130       140       150

        
pF1KE0 G
       :
CCDS89 G
        

>>CCDS31834.1 MYL6 gene_id:4637|Hs108|chr12               (151 aa)
 initn: 832 init1: 675 opt: 761  Z-score: 518.1  bits: 102.3 E(32554): 1.6e-22
Smith-Waterman score: 761; 74.2% identity (91.4% similar) in 151 aa overlap (47-197:3-151)

         20        30        40        50        60        70      
pF1KE0 PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAFSLFDRTPTGEMKITYG
                                     ::: ::  ::::::.:::::  :. :: :.
CCDS31                             MCDFTEDQTAEFKEAFQLFDRT--GDGKILYS
                                           10        20          30

         80        90       100       110       120       130      
pF1KE0 QCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFV
       :::::.:::::::::::::.:::.:: .:::::.:::: :::.:: ...::.::::::.:
CCDS31 QCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYV
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KE0 EGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMS
       :::::::::.::::::::.::::.:::::::: :::.:.::.::.::::::: .:. ...
CCDS31 EGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEELVRMVLN
              100       110       120       130       140       150

        
pF1KE0 G
       :
CCDS31 G
        

>>CCDS2391.1 MYL1 gene_id:4632|Hs108|chr2                 (150 aa)
 initn: 654 init1: 654 opt: 740  Z-score: 504.5  bits: 99.8 E(32554): 8.8e-22
Smith-Waterman score: 740; 76.2% identity (88.7% similar) in 151 aa overlap (46-196:1-149)

          20        30        40        50        60        70     
pF1KE0 APAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAFSLFDRTPTGEMKITY
                                     ..:.:::: :::::: ::::  ::. ::: 
CCDS23                               MSFSADQIAEFKEAFLLFDR--TGDSKITL
                                             10        20          

          80        90       100       110       120       130     
pF1KE0 GQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDF
       .: :::::::: ::::::: .:::.:. ::.:.: ..:: :::..: :: ::.:.:::::
CCDS23 SQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDF
       30        40        50        60        70        80        

         140       150       160       170       180       190     
pF1KE0 VEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIM
       ::::::::::.:::::::::::::::::::: : ::: :.:::::.::::::::::::::
CCDS23 VEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIM
       90       100       110       120       130       140        

         
pF1KE0 SG
       : 
CCDS23 SI
      150




197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:01:43 2016 done: Thu Nov  3 06:01:43 2016
 Total Scan time:  1.460 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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