FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8940, 297 aa 1>>>pF1KB8940 297 - 297 aa - 297 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.1722+/-0.000333; mu= 0.1900+/- 0.021 mean_var=246.7343+/-50.536, 0's: 0 Z-trim(123.5): 250 B-trim: 782 in 2/57 Lambda= 0.081651 statistics sampled from 43281 (43546) to 43281 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.511), width: 16 Scan time: 7.860 The best scores are: opt bits E(85289) NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 1963 243.3 4.4e-64 NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 839 110.9 2.9e-24 NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 318 49.6 1e-05 NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 310 48.6 2e-05 NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 305 48.0 2.6e-05 NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 303 47.8 3.4e-05 NP_004088 (OMIM: 600034) homeobox protein EMX1 [Ho ( 290) 296 46.9 5.5e-05 NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 294 46.7 7.2e-05 NP_796374 (OMIM: 605955) homeobox protein Nkx-6.2 ( 277) 292 46.4 7.4e-05 NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 291 46.3 8.3e-05 NP_612138 (OMIM: 601911,616788) homeobox protein D ( 240) 289 46.0 8.5e-05 XP_016872278 (OMIM: 605955) PREDICTED: homeobox pr ( 277) 287 45.8 0.00011 NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289) 287 45.9 0.00012 NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 286 45.8 0.00013 NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 285 45.7 0.00015 NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 283 45.4 0.00015 XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 283 45.4 0.00015 XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 282 45.3 0.0002 NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 277 44.6 0.00022 NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 274 44.1 0.00022 XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 274 44.1 0.00022 NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 279 44.9 0.00023 NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 277 44.6 0.00024 NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 277 44.7 0.0003 NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 273 44.2 0.00033 NP_001418 (OMIM: 131310) homeobox protein engraile ( 333) 275 44.5 0.00034 XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 274 44.4 0.00036 NP_001417 (OMIM: 131290) homeobox protein engraile ( 392) 275 44.6 0.00039 NP_001182446 (OMIM: 186770) T-cell leukemia homeob ( 257) 270 43.8 0.00042 NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 ( 364) 271 44.1 0.0005 XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 267 43.6 0.0008 XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 267 43.6 0.0008 XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 267 43.6 0.0008 XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 267 43.6 0.0008 XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 267 43.6 0.0008 NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 267 43.6 0.0008 XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 267 43.6 0.0008 XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 267 43.6 0.0008 NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 263 43.0 0.00081 NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 265 43.4 0.00086 NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 ( 367) 262 43.0 0.0011 NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 257 42.2 0.0011 XP_011538047 (OMIM: 186770) PREDICTED: T-cell leuk ( 269) 258 42.4 0.0012 XP_016867292 (OMIM: 220600,600028) PREDICTED: home ( 161) 252 41.5 0.0013 XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 252 41.5 0.0013 NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapie ( 264) 256 42.2 0.0014 NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 258 42.5 0.0014 NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 258 42.5 0.0014 NP_005213 (OMIM: 600030) homeobox protein DLX-6 [H ( 293) 254 42.0 0.0017 NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 254 42.0 0.0018 >>NP_002439 (OMIM: 106600,142983,189500,608874) homeobox (303 aa) initn: 1963 init1: 1963 opt: 1963 Z-score: 1271.5 bits: 243.3 E(85289): 4.4e-64 Smith-Waterman score: 1963; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:7-303) 10 20 30 40 50 pF1KB8 MTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLP :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLP 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB8 GGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 GGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFT 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB8 TAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 TAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB8 AAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMY 250 260 270 280 290 300 pF1KB8 HLT ::: NP_002 HLT >>NP_002440 (OMIM: 123101,168500,168550,604757) homeobox (267 aa) initn: 829 init1: 600 opt: 839 Z-score: 556.6 bits: 110.9 E(85289): 2.9e-24 Smith-Waterman score: 911; 58.9% identity (78.9% similar) in 275 aa overlap (25-297:16-267) 10 20 30 40 50 pF1KB8 MTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPK-VSPSLLPFSVEA ..:...:. . . :. : .:. . :. : ::::::: NP_002 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEA 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 LMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLK ::.:.. : ::.. :.:.. .::.. .:: . .. :: .: :: :: .: NP_002 LMSDKKPP--KEASPLPAESA-SAGATLRPLLL--SGHGAREA-HSPGPL--------VK 60 70 80 90 120 130 140 150 160 170 pF1KB8 LPEDALVKAESPEKPERTPWMQSP-RFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQL : : ::.:. : . . ::: : :.:::: :..:: .::::::::::::::::::.:: NP_002 PFETASVKSENSE--DGAAWMQEPGRYSPPP-RHMSPTTCTLRKHKTNRKPRTPFTTSQL 100 110 120 130 140 150 180 190 200 210 220 230 pF1KB8 LALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKP :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: NP_002 LALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKP 160 170 180 190 200 210 240 250 260 270 280 290 pF1KB8 MLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMYHLT ::: ..:.: ::...: . ::.:::: ::.: .::. :::::.. :::.::::. NP_002 MLP-SSFSLPFPISSPLQA-----ASIYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS 220 230 240 250 260 >>NP_004396 (OMIM: 126255) homeobox protein DLX-2 [Homo (328 aa) initn: 314 init1: 246 opt: 318 Z-score: 223.7 bits: 49.6 E(85289): 1e-05 Smith-Waterman score: 343; 31.0% identity (56.1% similar) in 287 aa overlap (18-297:30-286) 10 20 30 40 pF1KB8 MTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKV :.::::: :.. ....... ::. NP_004 MTGVFDSLVADMHSTQIAASSTYHQHQQPPSGGGAG--PGGNSSSSSSL------HKPQE 10 20 30 40 50 50 60 70 80 90 100 pF1KB8 SPSLLPFSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRP ::.: : :. : .:. .. :.::.. : : . .:. . .: NP_004 SPTL-PVST-----------ATDSSYYTNQQHPAGGGGGG--GSPYAHMGSYQYQASGLN 60 70 80 90 110 120 130 140 150 160 pF1KB8 LGHFSVGGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLR-KHKTNR .:. . : : : . : : .:: . : . : : . : : : NP_004 NVPYSAKSSYDLGYTA---AYTSYAPYGTS--SSPANNEPEKEDLEPEIRIVNGKPKKVR 100 110 120 130 140 150 170 180 190 200 210 220 pF1KB8 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEA :::: ... :: ::.:.:.. :::.. ::::...::.::.:::::::::::.: :.. .. NP_004 KPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKS 160 170 180 190 200 210 230 240 250 260 270 280 pF1KB8 -ELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQ----RAALPVAPV :. . . . :: : : :...::. .. . :..:: . .. .: NP_004 GEIPSEQHPGASASPPCA---SPPVSAPASWDFGVPQRMAGGGGPGSGGSGAGSSGSSPS 220 230 240 250 260 270 290 pF1KB8 GLYTAHVG-YSMYHLT . .: .: : :: : NP_004 SAASAFLGNYPWYHQTSGSASHLQATAPLLHPTQTPQPHHHHHHHGGGGAPVSAGTIF 280 290 300 310 320 >>NP_038463 (OMIM: 601881,611038) retinal homeobox prote (346 aa) initn: 227 init1: 227 opt: 310 Z-score: 218.3 bits: 48.6 E(85289): 2e-05 Smith-Waterman score: 332; 32.8% identity (55.5% similar) in 265 aa overlap (46-287:4-256) 20 30 40 50 60 70 pF1KB8 GKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADH--RKPGAKESA : .:.. : .: : :.::.. : NP_038 MHLPGCAPAMADGSFS--LAGHLLRSPGGSTSR 10 20 30 80 90 100 110 120 130 pF1KB8 LAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEK : :.. . . ::. :. :: : : :: . . : ::.. . : NP_038 LHSIEAILGFTKDDGILGTFPAERGARGAKERDRRLG--ARPACPKAPEEG-SEPSPPPA 40 50 60 70 80 140 150 160 170 pF1KB8 PERTPWMQSPR-FSP--PPARRLSP-----PACTLRK-------HKTNRKPRTPFTTAQL : .: ...:: . : : : :: :: : .: .:. :: ::: :: NP_038 PAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQL 90 100 110 120 130 140 180 190 200 210 220 230 pF1KB8 LALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKP ::: :....: .. : :......: :..:..:::::::: .: .. :. ..:. .: NP_038 HELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSP 150 160 170 180 190 200 240 250 260 270 280 290 pF1KB8 ML-----PPAAFGLSFPLG-GPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYS .: ::.: :: ::: ::.. .. ::..: :.. : : : :: NP_038 LLSFSRSPPSAT-LS-PLGAGPGSGGGPAGGAL-----PLESWLGPPLPGGGATALQSLP 210 220 230 240 250 260 pF1KB8 MYHLT NP_038 GFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPR 270 280 290 300 310 320 >>NP_057254 (OMIM: 604240) T-cell leukemia homeobox prot (284 aa) initn: 297 init1: 215 opt: 305 Z-score: 216.3 bits: 48.0 E(85289): 2.6e-05 Smith-Waterman score: 305; 32.8% identity (56.6% similar) in 244 aa overlap (17-254:15-246) 10 20 30 40 50 60 pF1KB8 MTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEAL .: . : : :. . ....: . : . . :: NP_057 MEPGMLGPHNLPHHEPISFGIDQILSGPETPGGGLGLGRGGQGHGENGA---FSGGYH 10 20 30 40 50 70 80 90 100 110 pF1KB8 MADHRKPGAKESALAPSEGVQAAG----GSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGG :. :... . : : :: .: . .:: ::: . ::: .:. : :: ..:: NP_057 GASGYGPAGSLAPLPGSSGVGPGGVIRVPAHRPLPVPPPAGGAPAVPG-PSGLG--GAGG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 LLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTA : : . ... : .: :: :: .::.. : . : .:::: :. . NP_057 LAGLTFPWMDSGRRFAK-DRLTAALSP-FSG--TRRIGHPYQN-RTPPKRKKPRTSFSRS 120 130 140 150 160 180 190 200 210 220 230 pF1KB8 QLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL--QEAELEKLKM :.: :::.: ...::. :::: ....: .:..::: ::::::.: .: .: : :. . NP_057 QVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHR- 170 180 190 200 210 220 240 250 260 270 280 290 pF1KB8 AAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMY :.. .: .: :: : NP_057 AGRLLLHLQQDALPRPLRPPLPPDPLCLHNSSLFALQNLQPWAEDNKVASVSGLASVV 230 240 250 260 270 280 >>NP_004378 (OMIM: 108900,187500,217095,225250,600584,61 (324 aa) initn: 296 init1: 254 opt: 303 Z-score: 214.3 bits: 47.8 E(85289): 3.4e-05 Smith-Waterman score: 328; 32.0% identity (52.0% similar) in 275 aa overlap (46-292:5-269) 20 30 40 50 60 70 pF1KB8 GKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALA : ..:. ::::. .. ... . .: NP_004 MFPSPALTPT--PFSVKDILNLEQQQRSLAAAGE 10 20 30 80 90 100 110 120 130 pF1KB8 PSEGVQA--AGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEK : ..: : .: . . : . ..:.: . : . .: . : : . : NP_004 LSARLEATLAPSSCMLAAFKPEAYAGPEAAAPGLPELRAELG---RAPSPAKCASAFPAA 40 50 60 70 80 140 150 160 170 pF1KB8 PERTPWMQSPRFSPPPA---RRLSPPACTLRK----HKTN------------RKPRTPFT : : : .: :: : . :.:.: .::. ::::. :. NP_004 PAFYPRAYS---DPDPAKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFS 90 100 110 120 130 140 180 190 200 210 220 230 pF1KB8 TAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL-QEAELEKLK ::. :::.:.:..::: :: ...: :.:: ::::::::::: : :: :. :: . NP_004 QAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVG 150 160 170 180 190 200 240 250 260 270 280 pF1KB8 MAAKPMLPPAAFGLSFPL----GGPAAVAAAAGASLYGAS-GPFQRAALPVAP-VGLYTA . : :: : .. :. : : .: : ::.. .:. : :. : : . NP_004 LPPPP--PPPARRIAVPVLVRDGKPCLGDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAAC 210 220 230 240 250 260 290 pF1KB8 HVGYSMYHLT ::: NP_004 SPGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQSNSGVSTLHGIRAW 270 280 290 300 310 320 >>NP_004088 (OMIM: 600034) homeobox protein EMX1 [Homo s (290 aa) initn: 277 init1: 213 opt: 296 Z-score: 210.5 bits: 46.9 E(85289): 5.5e-05 Smith-Waterman score: 298; 33.9% identity (55.7% similar) in 230 aa overlap (7-230:42-255) 10 20 30 pF1KB8 MTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAA : .: : .: .: :.: . ..:.. : NP_004 AAPGRGALPRARLPRTAPAAATMFQPAAKRGFTIE-SLVAKDGGTGGGTGGGGAGSHLLA 20 30 40 50 60 70 40 50 60 70 80 90 pF1KB8 MGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGS .:.:: .: :: : :.: :.:.. . . ::.:... : : NP_004 AAASEEPLRPT-----------ALNYPH--PSAAEAAFVSGFPAAAAAGAGRSLYGGP-E 80 90 100 110 100 110 120 130 140 150 pF1KB8 LGAPDAPSSPRPLGH--FSVGGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLS : :.: . : : ..:. : .. :. . . ::. :: . . NP_004 LVFPEAMNHPALTVHPAHQLGASPLQPPHSFFGAQHRDPLHFYPWVLRNRFFGHRFQASD 120 130 140 150 160 170 160 170 180 190 200 210 pF1KB8 PPACTLRKHKT-NRKP---RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQV : : : ::: :: :. .::: ::: :....:. ::: ....::::.:::: NP_004 VPQDGLLLHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQV 180 190 200 210 220 230 220 230 240 250 260 270 pF1KB8 KIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASG :.::::::.: :: :. : : NP_004 KVWFQNRRTKYKR-QKLEEEGPESEQKKKGSHHINRWRIATKQANGEDIDVTSND 240 250 260 270 280 290 >>NP_005512 (OMIM: 186770) T-cell leukemia homeobox prot (330 aa) initn: 205 init1: 205 opt: 294 Z-score: 208.4 bits: 46.7 E(85289): 7.2e-05 Smith-Waterman score: 294; 29.5% identity (54.5% similar) in 264 aa overlap (16-266:53-304) 10 20 30 40 pF1KB8 MTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAK : . ::.:.: ...:. :.:.:. :. NP_005 QILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGGGSAAATGAGGAGAYGTGGPGGP 30 40 50 60 70 80 50 60 70 80 90 100 pF1KB8 PKVSPSLLPFSVEALMADHRKPGAKESALAPSEGVQAAGGSA--QPLGVP--PGSLGAPD . . :. : ... : .. .:. : ..::.. . :: :. NP_005 GGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSSGGAGALSAAGVIRVPAHRPLAG 90 100 110 120 130 140 110 120 130 140 150 pF1KB8 APSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTPWMQS------PRFSPPPARRLSP : . :.::. :: .: . . . :::.: ::. : . .: NP_005 AVAHPQPLAT----GLPTVPSVPAMPGVNNLTGLTFPWMESNRRYTKDRFTGHPYQNRTP 150 160 170 180 190 160 170 180 190 200 210 pF1KB8 PACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQ : :.: :::: :: :. ::..:....::. :::: ....:..:..::: ::: NP_005 P-----KKK---KPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQ 200 210 220 230 240 250 220 230 240 250 260 270 pF1KB8 NRRAKAKRLQEAELEKLKMAAKPML---PPAAFGLSFPLGGPAAVAAAAGASLYGASGPF :::.: .: : : .. :. .: :: :. :: . ..::. NP_005 NRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHNSSLFALQNLQ 260 270 280 290 300 310 280 290 pF1KB8 QRAALPVAPVGLYTAHVGYSMYHLT NP_005 PWSDDSTKITSVTSVASACE 320 330 >>NP_796374 (OMIM: 605955) homeobox protein Nkx-6.2 [Hom (277 aa) initn: 283 init1: 183 opt: 292 Z-score: 208.2 bits: 46.4 E(85289): 7.4e-05 Smith-Waterman score: 292; 30.3% identity (60.6% similar) in 221 aa overlap (27-233:6-215) 10 20 30 40 50 60 pF1KB8 MTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEAL :.: . ..: ..: .. :. :.: :.:..... NP_796 MDTNRPGAFVLSSAPLAALHNMAEMKTS--LFPYALQG- 10 20 30 70 80 90 100 110 120 pF1KB8 MADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKL : . :. ..:. . . . : .. :: : :. :. . :: : : .:. NP_796 PAGFKAPAL--GGLGAQLPLGTPHGISDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFG 40 50 60 70 80 90 130 140 150 160 pF1KB8 PEDALVK------AESPEKP--------ERTPWMQSPRFSPPPARRLSPPACTLRKHKTN : :... :: : .: . .:: ..::.. : .: . .: : . NP_796 PAAAVARGYPKPLAELPGRPPIFWPGVVQGAPW-RDPRLAGP-----APAGGVLDKDGKK 100 110 120 130 140 170 180 190 200 210 220 pF1KB8 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQE .. : :. :..:::. :.: .::. :::... ::..::.:::.::::::.: .. . NP_796 KHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHA 150 160 170 180 190 200 230 240 250 260 270 280 pF1KB8 AELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYT ::. . : NP_796 AEMASAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSP 210 220 230 240 250 260 >>NP_066305 (OMIM: 604640) T-cell leukemia homeobox prot (291 aa) initn: 322 init1: 212 opt: 291 Z-score: 207.3 bits: 46.3 E(85289): 8.3e-05 Smith-Waterman score: 303; 32.4% identity (58.1% similar) in 222 aa overlap (26-240:32-240) 10 20 30 40 50 pF1KB8 MTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPF ::. . .:.. . :..: .. :: NP_066 EAPASAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRPGATYPSLPA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 SVEALMADHRKPGAKES--ALAPSEGVQAAGGSAQPLGVPPGSLGA-PDAPSSPRPLGHF : .: : . :. .:::. ... . : .::: .: : :: : NP_066 SFAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTV---S 70 80 90 100 110 120 130 140 150 160 pF1KB8 SVGGLLKLP--EDA--LVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRK :.::: ..: :.. .:: . ::. . :.. : : .:: :: : NP_066 SLGGL-NFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNR-TPPK---RK-----K 120 130 140 150 160 170 180 190 200 210 220 pF1KB8 PRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAE ::: :. .:. ::..:....::. :::: ...::..:..::: ::::::.: .: : NP_066 PRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 170 180 190 200 210 220 230 240 250 260 270 280 pF1KB8 LEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAH : .. :. .. NP_066 REAERQQASRLMLQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQNLQPWEEDSSKVPAVT 230 240 250 260 270 280 297 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 01:10:48 2016 done: Sat Nov 5 01:10:49 2016 Total Scan time: 7.860 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]