FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0139, 180 aa
  1>>>pF1KE0139 180 - 180 aa - 180 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8113+/-0.000308; mu= 15.5390+/- 0.019
 mean_var=58.0091+/-11.737, 0's: 0 Z-trim(116.2): 2  B-trim: 0 in 0/53
 Lambda= 0.168394
 statistics sampled from 27250 (27252) to 27250 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.32), width:  16
 Scan time:  5.750

The best scores are:                                      opt bits E(85289)
NP_054880 (OMIM: 611831) 39S ribosomal protein L18 ( 180) 1216 303.0 1.7e-82
NP_001305746 (OMIM: 611831) 39S ribosomal protein  ( 129)  741 187.5 6.9e-48


>>NP_054880 (OMIM: 611831) 39S ribosomal protein L18, mi  (180 aa)
 initn: 1216 init1: 1216 opt: 1216  Z-score: 1602.2  bits: 303.0 E(85289): 1.7e-82
Smith-Waterman score: 1216; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE0 MALRSRFWGLFSVCRNPGCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MALRSRFWGLFSVCRNPGCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 VARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQRIYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 NVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQRIYE
              130       140       150       160       170       180

>>NP_001305746 (OMIM: 611831) 39S ribosomal protein L18,  (129 aa)
 initn: 741 init1: 741 opt: 741  Z-score: 980.7  bits: 187.5 E(85289): 6.9e-48
Smith-Waterman score: 741; 95.7% identity (97.4% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE0 MALRSRFWGLFSVCRNPGCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALRSRFWGLFSVCRNPGCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTR
       :::::::::::::::::::::::::::::::::::::::::::::::.: . : :     
NP_001 VARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTHETTTKCHDRRWC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQRIYE
                                                                   
NP_001 GSTGTSENL                                                   
                                                                   




180 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:53:15 2016 done: Fri Nov  4 00:53:16 2016
 Total Scan time:  5.750 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]