FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6843, 175 aa 1>>>pF1KB6843 175 - 175 aa - 175 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1981+/-0.000281; mu= 13.0912+/- 0.018 mean_var=60.7911+/-12.077, 0's: 0 Z-trim(118.3): 1 B-trim: 0 in 0/52 Lambda= 0.164496 statistics sampled from 31149 (31150) to 31149 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.365), width: 16 Scan time: 4.990 The best scores are: opt bits E(85289) NP_071344 (OMIM: 611830) 39S ribosomal protein L17 ( 175) 1170 285.4 3.2e-77 >>NP_071344 (OMIM: 611830) 39S ribosomal protein L17, mi (175 aa) initn: 1170 init1: 1170 opt: 1170 Z-score: 1507.2 bits: 285.4 E(85289): 3.2e-77 Smith-Waterman score: 1170; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175) 10 20 30 40 50 60 pF1KB6 MRLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 MRLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 DYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 DYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKM 70 80 90 100 110 120 130 140 150 160 170 pF1KB6 AVIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEASNHSSHTAQTPGI ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 AVIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEASNHSSHTAQTPGI 130 140 150 160 170 175 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 00:22:43 2016 done: Sat Nov 5 00:22:43 2016 Total Scan time: 4.990 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]