GENSCAN 1.0	Date run:  4-Nov-116	Time: 06:29:53

Sequence gi568815592r:39806360_40027578 : 221219 bp : 45.47% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -    984    979    6                               1.05
 1.03 Term -   3194   3181   14  0  2  116   54     4 0.333  -1.84
 1.02 Intr -   6758   6687   72  0  0  114   47    74 0.871   5.28
 1.01 Init -   8528   8459   70  2  1   59   69   105 0.898   6.91
 1.00 Prom -  22478  22439   40                              -1.36

 2.00 Prom +  28344  28383   40                              -2.46
 2.01 Init +  46212  46369  158  2  2   75   57   156 0.518   8.66
 2.02 Intr +  47287  47300   14  1  2   55  116    11 0.487  -4.98
 2.03 Intr +  49888  50111  224  2  2  118   49   291 0.454  26.05
 2.04 Intr +  54569  54658   90  1  0  107   44   113 0.932   8.99
 2.05 Intr +  58074  58148   75  2  0  119  101   118 0.999  15.91
 2.06 Intr +  58621  58715   95  0  2   88   76   145 0.988  12.06
 2.07 Intr +  61151  61484  334  2  1   41   94   401 0.994  31.57
 2.08 Intr +  62464  62574  111  0  0  101   59   248 0.999  23.78
 2.09 Intr +  63981  64084  104  2  2   71  108   159 0.999  15.17
 2.10 Intr +  65147  65213   67  2  1  101   77   105 0.999   9.61
 2.11 Intr +  66879  66996  118  2  1  148   95   206 0.999  27.34
 2.12 Intr +  68971  69109  139  2  1   58   58   268 0.999  20.32
 2.13 Intr +  71844  71902   59  0  2   77  100    87 0.999   7.33
 2.14 Intr +  72045  72205  161  1  2   96   28   203 0.511  14.81
 2.15 Intr +  73023  73118   96  2  0   92   83    61 0.952   6.21
 2.16 Intr +  77603  77710  108  1  0   40  110   156 0.995  13.48
 2.17 Intr +  81127  81233  107  0  2   73   55   183 0.978  12.51
 2.18 Intr +  82320  82404   85  0  1   20   94   152 0.978   8.82
 2.19 Intr +  84982  85088  107  0  2  100   47   228 0.632  18.91
 2.20 Intr +  85275  85363   89  0  2   82   97   163 0.999  16.21
 2.21 Intr +  90453  90621  169  1  1   88   94   244 0.999  24.00
 2.22 Intr +  90816  90923  108  0  0   96   61   107 0.995   8.20
 2.23 Intr +  92518  92578   61  1  1  115   89    24 0.542   3.94
 2.24 Intr +  93718  93849  132  0  0   84  116   213 0.947  24.54
 2.25 Intr +  94943  95113  171  1  0   84   77   278 0.999  26.44
 2.26 Term +  95454  95678  225  2  0   80   43   351 0.999  26.58
 2.27 PlyA +  98221  98226    6                               1.05

 3.10 PlyA -  98985  98980    6                               1.05
 3.09 Term - 100488  99998  491  1  2   92   42   539 0.842  44.52
 3.08 Intr - 102743 102696   48  0  0  112   72    73 0.989   6.75
 3.07 Intr - 103596 103476  121  0  1   22  111   120 0.993   7.77
 3.06 Intr - 106015 105905  111  1  0  101  105   125 0.999  16.08
 3.05 Intr - 106645 106533  113  2  2   54   72   157 0.923  10.80
 3.04 Intr - 107069 106958  112  2  1   81   61   130 0.984   9.55
 3.03 Intr - 107476 107415   62  2  2   75  100   166 0.993  14.95
 3.02 Intr - 109873 109709  165  2  0  109  105   226 0.994  26.33
 3.01 Init - 110834 110825   10  2  1   78   74    16 0.619  -1.07
 3.00 Prom - 118349 118310   40                              -6.46

 4.06 PlyA - 118404 118399    6                               1.05
 4.05 Term - 119486 119233  254  0  2  121   44   452 0.997  39.90
 4.04 Intr - 121096 120970  127  1  1  109   76   150 0.992  16.15
 4.03 Intr - 128261 127936  326  0  2   78   83   199 0.783  13.89
 4.02 Intr - 138662 138597   66  0  0  115   76     6 0.112   0.98
 4.01 Init - 152291 152135  157  2  1   80   18   152 0.032   7.47
 4.00 Prom - 156006 155967   40                              -4.86

 5.00 Prom + 163765 163804   40                              -4.76
 5.01 Init + 165105 165449  345  2  0   49   55   114 0.323   1.42
 5.02 Intr + 168361 168417   57  0  0   91   92    55 0.536   5.28
 5.03 Intr + 176989 177081   93  0  0   88   92    18 0.015   2.36
 5.04 Intr + 186480 186650  171  2  0   44   36   260 0.000  16.54
 5.05 Intr + 193275 193538  264  2  0   35  -15   287 0.076  10.81
 5.06 Term + 193639 193845  207  0  0   14   48   227 0.097   8.64
 5.07 PlyA + 194222 194227    6                               1.05

 6.03 PlyA - 196235 196230    6                               1.05
 6.02 Term - 216315 216199  117  0  0   88   34    88 0.489   1.94
 6.01 Intr - 216736 216636  101  2  2  109   86    33 0.293   5.03

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 117003 117121  119  2  2   86   81    76 0.879   4.50
S.002 Sngl - 152291 152052  240  2  0   80   37   211 0.825  10.28
S.003 Init - 178103 178055   49  2  1   72   88    53 0.813   5.04
S.004 Sngl + 186456 186689  234  2  0   78   51   317 0.928  22.10
S.005 Sngl + 193594 193845  252  0  0   87   48   265 0.880  17.49


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:39806360_40027578|GENSCAN_predicted_peptide_1|51_aa
MEEERDEYPVEFNLENFLEEEPREENVIRLVPSDELGRQAPRLWFVRGQPL

>gi568815592r:39806360_40027578|GENSCAN_predicted_CDS_1|156_bp
atggaggaggagagggatgagtatccagtggaattcaacctggaaaacttcctggaggaa
gagccacgtgaggaaaatgtcatccggttagtgccctcagatgaactgggaaggcaagct
ccccggttgtggtttgtgaggggacaaccattgtga

>gi568815592r:39806360_40027578|GENSCAN_predicted_peptide_2|1068_aa
MGMEARCRVALPLVSPSVLQAFHFYYFLYSSLKPSEEDPVIRVSRMRKLGLQSRAKKDHN
EDLGHLSADAPWPAVTMAPRKRSHHGLGFLCCFGGSDIPEINLRDNHPLQFMEFSSPIPN
AEELNIRFAELVDELDLTDKNREAMFALPPEKKWQIYCSKKKEQEDPNKLATSWPDYYID
RINSMAAMQSLYAFDEEETEMRNQVVEDLKTALRTQPMRFVTRFIELEGLTCLLNFLRSM
DHATCESRIHTSLIGCIKALMNNSQGRAHVLAQPEAISTIAQSLRTENSKTKVAVLEILG
AVCLVPGGHKKVLQAMLHYQVYAAERTRFQTLLNELDRSLGRYRDEVNLKTAIMSFINAV
LNAGAGEDNLEFRLHLRYEFLMLGIQPVIDKLRQHENAILDKHLDFFEMVRNEDDLELAR
RFDMVHIDTKSASQMFELIHKKLKYTEAYPCLLSVLHHCLQMPYKRNGGYFQQWQLLDRI
LQQIVLQDERGVDPDLAPLENFNVKNIVNMLINENEVKQWRDQAEKFRKEHMELVSRLER
KERECETKTLEKEEMMRTLNKMKDKLARESQELRQARGQVAELDPYPSSDVPLRKKRVPQ
PSHPLKSFNWVKLNEERVPGTVWNEIDDMQVFRILDLEDFEKMFSAYQRHQKELGSTEDI
YLASRKVKELSVIDGRRAQNCIILLSKLKLSNEEIRQAILKMDEQEDLAKDMLEQLLKFI
PEKSDIDLLEEHKHEIERMARADRFLYEMSRIDHYQQRLQALFFKKKFQERLAEAKPKVE
AILLASRELVRSKRLRQMLEVILAIGNFMNKGQRGGAYGFRVASLNKIADTKSSIDRNIS
LLHYLIMILEKHFPDILNMPSELQHLPEAAKVNLAELEKEVGNLRRGLRAVEVELEYQRR
QVREPSDKFVPVMSDFITVSSFSFSELEDQLNEARDKFAKALMHFGEHDSKMQPDEFFGI
FDTFLQAFSEARQDLEAMRRRKEEEERRARMEAMLKEQRERERWQRQRKVLAAGSSLEEG
GEFDDLVSALRSGEVFDKDLCKLKRSRKRSGSQALEVTRERAINRLNY

>gi568815592r:39806360_40027578|GENSCAN_predicted_CDS_2|3207_bp
atgggaatggaggcccgctgcagggtggcgcttcctctagtgtcgcccagtgtgctccaa
gcatttcacttctattacttcctgtactcctcactgaaacccagcgaggaagaccctgtg
atcagggtgtcacggatgaggaagctggggcttcagagtagagccaagaaagatcacaat
gaggacctagggcatctgtctgctgacgccccctggcctgcagtgaccatggccccccgc
aagaggagccaccatggcctgggcttcctgtgctgcttcgggggcagtgacatccccgaa
atcaacctccgggacaaccaccctctgcagttcatggagttctccagccccatcccgaac
gcagaggagctcaacatccgctttgcagagctggtggatgaattggatctcactgacaaa
aaccgagaggctatgtttgcactgccccctgagaagaaatggcagatctactgcagcaag
aagaaggagcaggaggaccccaacaagctggcaaccagctggcctgactattacatcgac
cgcatcaattccatggctgcgatgcagagtctgtacgcgtttgatgaggaggagacggag
atgaggaaccaagtcgtggaagacctgaagacagccctccggacacagcctatgaggttt
gtgacccgcttcattgagctggagggcttgacctgtctgctaaatttcctccggagcatg
gaccacgccacctgtgagagccgcatccacacctcactcattggctgcatcaaagcattg
atgaacaactcccaggggcgggcacatgtgctggcacagcctgaggccattagtaccata
gcccagagcctacgcacagagaacagcaagaccaaggtggctgtgctggagatcctgggt
gctgtgtgcctcgtgcctggtggccacaagaaggtgctgcaggccatgctgcactaccag
gtgtatgcagcagagcgaacccgcttccagaccctgctgaacgagctagaccgaagtctg
ggccggtaccgggatgaagtgaatctgaaaacagccatcatgtccttcatcaatgctgtc
ctcaatgctggagctggagaggataatctggagttccgcctacatctacggtatgaattc
ctgatgctgggtatacagcctgtgattgacaagctccggcaacatgaaaatgccatcctg
gacaaacatttagacttcttcgagatggtgcggaatgaggatgacctggagctagccagg
aggtttgacatggtccacatcgacaccaagagtgcttcccagatgtttgagttgatccac
aagaagctgaagtacacggaggcctacccctgcctgctctctgtgctgcaccactgcctg
cagatgccctacaaacggaacggtggctacttccagcagtggcagctcctggaccgcatc
ctccagcagattgtcctccaggatgagcggggtgtggaccctgacctggctcccttggag
aacttcaatgtcaagaacatcgtcaacatgctcatcaacgagaatgaagtgaaacagtgg
cgagaccaggcagagaagttccggaaagaacacatggagcttgtgagccgtctggagagg
aaggagcgggaatgcgagacaaagacattggagaaggaagagatgatgcggacgctgaac
aaaatgaaggacaagctggcccgggagtcccaggagctgcgccaggctcggggacaagtg
gcagagctggacccctaccccagcagtgacgtcccactcaggaaaaagcgtgtcccccag
ccttctcacccactgaagtccttcaactgggtgaagctgaatgaggagcgtgtccctggc
accgtatggaatgagattgatgacatgcaggtatttcggatcctggacctagaggatttt
gaaaagatgttttcagcctaccagaggcaccagaaagagctgggctccactgaagacatc
tacctggcttcccgcaaggtcaaagagctgtcggtcattgatggccggagggcccaaaac
tgcatcatccttctttccaagttgaagctttctaacgaggagatccggcaggccatcttg
aagatggatgagcaggaggaccttgctaaggacatgctggagcagctcctcaagttcatc
ccagagaagagtgacattgacctcctggaggagcacaagcatgaaattgagcggatggcc
cgtgctgaccgcttcctctatgaaatgagcaggattgaccactaccagcagcgactgcaa
gccctcttcttcaagaagaaattccaggagcggctggctgaggcaaagcccaaagtggaa
gccatcctgttggcctcccgggagctggtccgcagcaagcgtcttagacagatgctagag
gtcatcctagccataggcaacttcatgaacaaagggcagcgtgggggcgcctacgggttc
cgggtggccagcctcaacaagatcgctgacaccaagtccagcatcgacagaaacatctct
ctgctccattacctgatcatgatcctggagaagcattttcctgatattctaaacatgcct
tcagagctgcaacatcttccagaagctgccaaagtcaacctagcagaactggagaaggag
gtgggcaacctcaggaggggcctgagagcggtggaggtggagctggagtatcagaggcgc
caggtacgggagcccagtgacaagtttgtccctgtcatgagcgacttcatcacggtgtcc
agcttcagcttctccgagctggaggaccagctaaatgaggccagggacaagttcgccaag
gccttgatgcacttcggggagcatgacagcaagatgcagccagacgaattctttggcatc
tttgataccttcttgcaggccttctcagaggcccggcaggatctagaggccatgaggagg
aggaaggaggaggaggagcggcgggcgcgcatggaagccatgctgaaggagcagagggaa
cgtgagcggtggcagcggcagcggaaggtcctggctgcaggcagctcgctggaggaggga
ggagagttcgatgacctggtgtcggccctgcgctctggggaggtcttcgacaaggactta
tgcaagctcaagcgcagccgcaagcgatcagggagccaggccctggaagttacccgggag
cgggcaataaaccggctaaattattga

>gi568815592r:39806360_40027578|GENSCAN_predicted_peptide_3|410_aa
MLNSQLQRLEGLRTIGVTTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKGF
HKVMEGIHKAIELGYNPVKVNCVVMRGLNEDELLDFAALTEGLPLDVRFIEYMPFDGNKW
NFKKMVSYKEMLDTVRQQWPELEKVPEEESSTAKAFKIPGFQGQISFITSMSEHFCGTCN
RLRITADGNLKVCLFGNSEVSLRDHLRAGASEQELLRIIGAAVGRKKRQHAGMFSISQMK
NRPMILIGPQLTSEQLTHVDSEGRAAMVDVGRKPDTERVAVASAVVLLGPVAFKLVQQNQ
LKKGDALVVAQLAGVQAAKVTSQLIPLCHHVALSHIQVQLELDSTRHAVKIQASCRARGP
TGVEMEALTSAAVAALTLYDMCKAVSRDIVLEEIKLISKTGGQRGDFHRA

>gi568815592r:39806360_40027578|GENSCAN_predicted_CDS_3|1233_bp
atgctgaactcccagctccagcggctggaagggctgagaaccataggtgttaccaccaat
ggcatcaacctggcccggctactgccccagcttcagaaggctggtctcagtgccatcaac
atcagcctggacaccctggtgcctgccaagtttgagttcattgtccgcaggaaaggcttc
cacaaggtcatggagggcatccacaaggccatcgagctgggctacaaccctgtgaaggtg
aactgtgtggtgatgcgaggccttaacgaggatgaactcctggactttgcggccttgact
gagggcctccccctggatgtgcgcttcatagagtatatgccctttgatggcaacaagtgg
aacttcaagaagatggtcagctataaggagatgctagacactgtccggcagcagtggcca
gagctggagaaggtgccagaggaggaatccagcacagccaaggcctttaaaatccctggc
ttccaaggccagatcagcttcatcacatccatgtctgagcatttctgtgggacctgcaac
cgcctgcgaatcacagctgatgggaacctcaaggtctgcctctttggaaactctgaggta
tccctgcgggatcacctgcgagctggggcctctgagcaggagctgctgagaatcattggg
gctgctgtgggcaggaagaagcggcagcatgcaggcatgttcagtatttcccagatgaag
aaccggcccatgatcctcatcggaccccagctaacctcagaacaactaactcatgtggac
tcggaaggacgggcagctatggtagatgtgggcaggaagccagacacagagcgggtggct
gtggcttcagccgtggtcctcctgggaccggtagccttcaagcttgtccagcagaaccag
ctcaagaaaggagatgccctagtggtggcccagctggctggagtccaggcagccaaggtg
accagccagctgatccctctgtgccaccacgtggccctgagccacatccaggtgcagctg
gagctggacagcacacgccatgccgtgaagatccaggcatcttgccgggctcggggcccc
accggggtggagatggaggccctgacctctgctgcagtggccgccctcaccctgtatgac
atgtgcaaggctgtcagcagggacatcgtgttggaggagatcaagctcattagcaagact
ggtggtcagcggggggacttccatcgggcttag

>gi568815592r:39806360_40027578|GENSCAN_predicted_peptide_4|309_aa
MATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVTVNNKGEMKVSCQGSPL
DRPHQNQMGRVIPAERYPGPGKWAQGAYYSSHKATRDCVLAYWLRGSRPPPAPPRPCWDD
PGGECPASVLPKRAAVPLVSGFMAARPLSRMLRRLLRSSARSCSSGAPVTQPCPGESARA
ASEEVSRRRQFLREHAAPFSAFLTDSFGRQHSYLRISLTEKCNLRCQYCMPEEGVPLTPK
ANLLTTEEILTLARLFVKEGIDKIRLTGGEPLIRPDVVDIVGELDESHRHFSQRCLIRLD
TDADVNSGS

>gi568815592r:39806360_40027578|GENSCAN_predicted_CDS_4|930_bp
atggccacagtcaagaaaggcaaaccagagctcagaaaaaaggtacatccagcagtggtt
attcgacaacgaaagtcataccgcagaaaagatggcgtgtttctttattttgaagataat
gcaggggtcacagtgaacaataaaggcgagatgaaagtctcctgccagggctccccactg
gacaggccccatcagaaccagatggggagggtcatccctgcagagcgctaccccggccca
ggaaagtgggcacagggagcgtactacagctcccacaaggccacgcgggactgcgtcctc
gcctattggctgcgcgggtcccgccctccccctgcccctccccgcccttgctgggatgac
cccgggggcgagtgcccggccagtgtgctcccgaagcgggctgcggttccgctcgtatca
ggcttcatggcggcgcggccactgtcccggatgctgcggcggcttctgaggtccagcgcc
cggagctgcagctcaggggctccggtgacccagccctgccccggggagtccgcgcgagct
gcctcggaggaggtgtccaggcggaggcagttcctgcgggagcatgcggcccccttctcc
gccttcctcacagacagcttcggccggcagcacagctacctgcggatctccctcacagag
aagtgcaacctcagatgtcagtactgcatgcccgaggagggggtcccgctgacccccaaa
gccaacctgctgaccacagaggagatcctgaccctcgcccggctctttgtgaaggaaggc
atcgacaagatccggctcacaggtggagagccgcttatccggccggacgtggtggacatt
gtgggtgagttggacgaaagtcatcgccacttctcccagcgctgcctcatccggctggac
actgatgccgatgttaacagtggcagctga

>gi568815592r:39806360_40027578|GENSCAN_predicted_peptide_5|378_aa
MWKQLWNWATGRSWNSLEGSEEDRKIWESLELRDLLNGFDQNPDSDMDNDVQAEVVSDGD
EELVGNWSKGDSCYVLVKRLAAFCPCPTDLWNVELERDDLGYLVEEISKQQNIQKDPVSP
ESGAEQATCDGKGENCELRFIVLTQGYSQPGMRPAPSLGQVPPFKASHCGNQISVKFLEV
IHDEHGIDPTITYHGDSDLQLDCISMYYDEATGGKHVLHTILCSAFTQSDTKVEPYSATL
SVHQLVENTDETYSIDNEALYNICSHTLKRTTPTYRDMNPLVSATMNSVITCLCFPGQLN
ADLHKLAVNMHVFNAKNMMAACEPRHGLYFTLAAVFTGQISMKDVNDKMLNMQNKNSSYF
VEWISNNVKNSLTSHLMA

>gi568815592r:39806360_40027578|GENSCAN_predicted_CDS_5|1137_bp
atgtggaagcaactttggaactgggcaacaggcagaagttggaacagtttggagggctca
gaagaagacaggaaaatatgggaaagtttggaacttagagacttgttgaatggctttgac
caaaatcctgatagtgatatggacaatgatgtccaggctgaggtggtctcagatggagat
gaggaacttgttgggaactggagcaaaggtgactcttgttatgttttagtaaagagactg
gcggcattttgcccctgccctacagatttgtggaatgttgagcttgagagagatgattta
gggtatctggtagaagaaatttctaagcagcaaaacattcaaaaggacccagtgagcccg
gagtctggagcagagcaggccacctgtgatggcaaaggagagaactgtgagctcaggttt
attgtcctcactcaaggctatagtcaaccaggaatgagacctgctccttcacttgggcaa
gttcctcccttcaaggccagtcactgtggcaaccagatcagtgtcaaattcttggaagtg
atccatgatgaacatggcattgaccccaccatcacctaccatggtgacagtgacctgcag
ctggactgcatctccatgtactacgacgaagccacaggtggcaaacatgttcttcatacc
atcctgtgtagtgccttcacccaaagtgacaccaaggtcgagccctacagtgccaccctc
tctgtccatcagttggtagagaacactgatgagacgtattccattgacaatgaagccctg
tataacatctgctcccacactctgaagcggaccacaccaacctacagggatatgaacccc
ctcgtctcagcaaccatgaacagtgtcatcacctgcctctgtttccctggccagctcaat
gccgacctccacaagttggcagtcaacatgcatgtcttcaatgccaagaacatgatggct
gcctgtgaaccccgccatggcttatacttcaccttggctgctgtcttcactggtcagata
tccatgaaggacgtcaatgacaaaatgttaaatatgcaaaacaaaaacagcagctacttt
gtggaatggatctccaacaacgtcaagaacagtctgacatcccatctcatggcctga

>gi568815592r:39806360_40027578|GENSCAN_predicted_peptide_6|72_aa
XVPAKAGSERRPWAECEMCGSSAGVGMTAVARVKILLHLQLVSYPGYLQMQVKGQLSLSE
DAAQWRDLEGRE

>gi568815592r:39806360_40027578|GENSCAN_predicted_CDS_6|219_bp
nctgtgcctgcaaaagccggaagtgaaagaaggccctgggcagaatgtgagatgtgcggt
tccagtgccggagttggtatgacagctgtagctagagtaaagatcttgttacatctccag
ctggtgtcctacccaggctacctgcagatgcaggttaaggggcaattaagtctctcggaa
gatgctgcccagtggagggacttggaagggagagaatag