GENSCAN 1.0	Date run:  5-Nov-116	Time: 19:48:22

Sequence gi568815597r:108964526_109175066 : 210541 bp : 43.96% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -    647    642    6                               1.05
 1.04 Term -   7047   6905  143  1  2   64   43    86 0.310  -0.21
 1.03 Intr -  18926  18757  170  1  2   90   91   121 0.899  12.19
 1.02 Intr -  22155  21998  158  0  2   91  116     4 0.815   2.31
 1.01 Init -  23099  23094    6  2  0   79   52     4 0.500  -3.36
 1.00 Prom -  24552  24513   40                              -9.75

 2.00 Prom +  24598  24637   40                              -2.66
 2.01 Sngl +  27757  28311  555  0  0   70   32   454 0.999  34.13
 2.02 PlyA +  28324  28329    6                               1.05

 3.09 PlyA -  30151  30146    6                               1.05
 3.08 Term -  30742  30730   13  0  1   96   47    -4 0.524  -6.03
 3.07 Intr -  31312  31055  258  0  0   88  101   106 0.580   8.48
 3.06 Intr -  37877  37699  179  2  2   46   63   118 0.795   3.82
 3.05 Intr -  40193  40067  127  1  1    4   75    79 0.150  -1.12
 3.04 Intr -  47193  46391  803  0  2   81  103   190 0.206  10.06
 3.03 Intr -  49400  49316   85  1  1  114   66    59 0.918   6.12
 3.02 Intr -  53076  52993   84  2  0   53  116    28 0.650   1.04
 3.01 Init -  58987  58830  158  1  2   68   64   102 0.707   5.18
 3.00 Prom -  59356  59317   40                              -7.36

 4.00 Prom +  65953  65992   40                              -2.56
 4.01 Init +  76983  77058   76  2  1   95   55   101 0.449   6.76
 4.02 Intr +  82476  82698  223  1  1   34  111   124 0.432   6.49
 4.03 Intr +  85823  85895   73  2  1   64   79    47 0.625   0.81
 4.04 Term +  88670  88708   39  1  0   71   50    31 0.219  -5.21
 4.05 PlyA +  89652  89657    6                               1.05

 5.05 PlyA -  91334  91329    6                               1.05
 5.04 Term - 100168  99998  171  1  0   57   47   208 0.999  11.43
 5.03 Intr - 101707 101610   98  2  2   54   95   118 0.863   8.83
 5.02 Intr - 110540 110462   79  2  1   52  101    41 0.557   0.92
 5.01 Init - 111422 111396   27  2  0   50  113    46 0.660   2.90
 5.00 Prom - 113695 113656   40                              -4.86

 6.00 Prom + 114236 114275   40                              -7.06
 6.01 Init + 117797 117873   77  1  2   78   64     0 0.119  -2.84
 6.02 Intr + 125794 125957  164  1  2   44   68    82 0.550   1.42
 6.03 Intr + 126072 126357  286  1  1   45   93   207 0.858  13.30
 6.04 Term + 129892 130054  163  1  1   77   49    96 0.837   2.01
 6.05 PlyA + 131543 131548    6                               1.05

 7.06 PlyA - 132361 132356    6                               1.05
 7.05 Term - 140123 139795  329  0  2   12   47   283 0.057  11.47
 7.04 Intr - 142134 142010  125  2  2  114   82    35 0.974   5.73
 7.03 Intr - 142597 142482  116  1  2   12   97   102 0.992   2.75
 7.02 Intr - 143512 143396  117  1  0   79   67    79 0.939   5.56
 7.01 Init - 149378 149322   57  2  0  101   45   122 0.362   8.53
 7.00 Prom - 160008 159969   40                              -1.46

 8.00 Prom + 164682 164721   40                              -3.46
 8.01 Init + 171816 172042  227  2  2   51   56   135 0.317   4.54
 8.02 Intr + 191843 191955  113  2  2   17   98    61 0.012   0.02
 8.03 Intr + 192600 192643   44  1  2   79   92    41 0.951   1.56
 8.04 Intr + 197369 197489  121  1  1   97   61   119 0.999  10.17
 8.05 Intr + 199974 200166  193  1  1  117   69   260 0.968  25.55
 8.06 Term + 202069 202171  103  1  1   44   38   161 0.751   4.45
 8.07 PlyA + 203915 203920    6                               1.05

 9.00 Prom + 205426 205465   40                              -2.36
 9.01 Init + 206376 206383    8  2  2   90   52     1 0.365  -2.86
 9.02 Intr + 207341 207488  148  2  1  139   62   321 0.998  34.84
 9.03 Intr + 207963 208043   81  2  0   55   65    86 0.843   2.83
 9.04 Intr + 208949 209054  106  1  1  112   84    65 0.989   8.29
 9.05 Intr + 209163 209312  150  1  0  131   64    78 0.174   9.83

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 141573 141503   71  1  2  132   36    75 0.936   4.80


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:108964526_109175066|GENSCAN_predicted_peptide_1|158_aa
MVDDKSKKQFVCINILEDTQAVRAVAFHPAGGLYAVGSNSKTLRVCAYPDVIDPSAHETP
KQPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGDLTKQLPI
MVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYNG

>gi568815597r:108964526_109175066|GENSCAN_predicted_CDS_1|477_bp
atggtggatgacaaatcaaaaaagcagtttgtttgtattaatatcctagaagacacacaa
gctgttagagcagtggcttttcatccagctggaggtttatatgctgttggttcaaattca
aaaactctgagagtatgtgcctatccagatgtaattgatccaagtgcacatgagactcct
aagcagccggtggtacgttttaaaaggaataaacatcataaaggatccatttactgtgtg
gcctggagtccttgtgggcagttattagcaacaggatcaaatgacaaatacgtcaaagtg
ctgcccttcaatgcagagacttgtaacgcaacaggggacctcaccaagcagcttcctatc
atggtggtgggggagcacaaggacaaagtgattcagtgcagatggcacacccaggatctt
tccttcctgtcatcctctgcagatagaactgtcaccctctggacttacaatgggtag

>gi568815597r:108964526_109175066|GENSCAN_predicted_peptide_2|184_aa
MVRYSLDPENPTESCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNTESNAELKGLDVDSLVIEHIQVN
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKRISQKKLKKQKL
MARE

>gi568815597r:108964526_109175066|GENSCAN_predicted_CDS_2|555_bp
atggttcgctattcacttgacccggagaaccccacggaatcatgcaaatcaagaggttcc
aatcttcgtgttcactttaagaacactcgtgaaactgctcaggccatcaagggtatgcat
atacgaaaagccacgaagtatctgaaagatgtcactttacagaaacagtgtgtaccattc
cgacgttacaatggtggagttggcaggtgtgcgcaggccaagcagtggggctggacacaa
ggtcggtggcccaaaaagagtgctgaatttttgctgcacatgcttaaaaacacagagagt
aatgctgaacttaagggtttagatgtagattctctggtcattgagcatatccaagtgaac
aaagcacctaagatgcgccgccggacctacagagctcatggtcggattaacccatacatg
agctctccctgccacattgagatgatccttacggaaaaggaacagattgttcctaaacca
gaagaggaggttgcccagaagaaaaggatatcccagaagaaactgaagaaacaaaaactt
atggcacgggagtaa

>gi568815597r:108964526_109175066|GENSCAN_predicted_peptide_3|568_aa
MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQ
WDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQC
LHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEACVMVAEFIPADR
KLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDL
DLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMR
RPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSL
MLENTECHSIYEESPERSDTPVDAQRPIGSEILGQSSVSEKEPANGAQNPGPAKQEKNEL
RDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRS
IQKLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLTHDASNIH
TSTPRNPGSTNHIPFLEESPCGSQIWHL

>gi568815597r:108964526_109175066|GENSCAN_predicted_CDS_3|1707_bp
atgacggctgaagaaacagtgaatgtaaaagaggttgaaatcattaagctaattttggac
ttcctgaattcaaagaagcttcacattagtatgctggccctggagaaggaaagtggagtc
ataaatggcctgttttcagatgatatgcttttcctgaggcagctaatacttgatggtcaa
tgggatgaagttcttcagttcattcagcctctagaatgtatggaaaaatttgacaaaaaa
aggtttcgttatattatcctgaagcagaagtttttagaagctttatgtgttaacaacgcg
atgtcagcagaagatgagccccagcatctggaatttaccatgcaagaagctgtgcaatgt
ttacatgctctagaagaatactgtccttctaaagatgactatagtaagctctgtttgctt
ttgactttgcctcgtctgaccaatcatgccgagtttaaggactggaatcccagcaccgca
cgagttcactgttttgaagaggcttgtgtcatggttgcagaattcatccctgctgatagg
aagctaagtgaagctggttttaaggctagtaacaatcgtttatttcagcttgtaatgaaa
ggcctgctttatgaatgctgtgtagaattttgtcagagtaaagcaactggagaagaaatt
acagaaagcgaagtgcttcttggcatcgacctcttatgtggtaatggttgtgatgatttg
gatctgagtttactgtcatggcttcagaatcttccatcttctgtcttctcttgtgctttt
gaacagaaaatgcttaatattcatgttgacaaacttctgaaacctacaaaagctgcatat
gctgatcttttgactcctcttatcagcaaactctctccctatccatcatccccaatgaga
agacctcaatcagctgatgcctatatgacccgctctctgaatcctgctttagatggcctc
acctgtggactaaccagtcatgataagagaatttcagaccttggaaacaaaacttctcca
atgtcacactcctttgctaacttccattatccaggggtacaaaacctcagtagaagtctc
atgcttgagaatacagaatgtcacagtatttacgaagaatcccctgagcgaagtgataca
cctgttgatgcacagaggcctatcggcagtgaaatcttgggccagagttcagtttcagaa
aaagagcctgcaaatggagcacagaatccaggaccagctaaacaagaaaaaaatgagctt
cgagattcaacagaacaatttcaagaatattataggcaaagattacgctatcaacagcat
ttagaacagaaggagcaacagcggcagatataccaacagatgttgcttgaaggaggcgtg
aatcaggaggatggtcctgatcagcagcagaatcttactgaacagttccttaataggtcc
attcaaaagcttggtgaattaaatattggaatggatggccttggtaatgaggtatcagca
ctcaaccagcaatgtaatgggagcaaaggcaatggatctaatggttcttctgtgactagt
tttactacaccaccccaagactctagtcagagattaacacatgatgcttcaaatattcat
acaagcactcctcgtaatcctggatcaacaaatcacataccttttctggaggaatcacct
tgtggaagccaaatttggcatctttga

>gi568815597r:108964526_109175066|GENSCAN_predicted_peptide_4|136_aa
MGTNLALTCCSVPGRGASLCPQNPTEDVLSSINGIQPARRNVVNRDGYYIEPIAQCAIIM
FDVTPRVTYKNVPNWHRDLVPMCEIITMMLCGNKVDIKDSCCNSSQLFKEDKACLDEGLS
SDSKEVRSVSARPPII

>gi568815597r:108964526_109175066|GENSCAN_predicted_CDS_4|411_bp
atgggcacgaacctcgcgctcacttgctgctcagtgccagggcgaggggcgtcgctctgc
ccccagaatccaactgaagatgtattaagttcaataaatgggatacagccggccaggaga
aatgtggtgaacagagatggttattacatcgaacccatagcccagtgtgccatcataatg
tttgatgtaacaccaagagttacgtacaagaatgtgcctaactggcatagagatttggtg
ccaatgtgtgaaatcatcaccatgatgttgtgtggcaacaaagtggatattaaggacagt
tgctgcaatagcagtcaattgttcaaagaggacaaggcttgcttagatgaaggactgtcc
tcagattccaaggaagtgaggagcgtctctgcccggccgcccatcatctga

>gi568815597r:108964526_109175066|GENSCAN_predicted_peptide_5|124_aa
MADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDL
VIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEA
NYGS

>gi568815597r:108964526_109175066|GENSCAN_predicted_CDS_5|375_bp
atggcagatgaggaagaagaccccacgtttgaggaagaaaatgaagaaattggaggaggt
gcagaaggtggacagggtaaaagaaagagacttttttctaaagaattgcgatgtatgatg
tatggctttggggatgaccagaatccttatactgagtcagtggatattcttgaagatctt
gtcatagagtttatcactgaaatgactcacaaggcaatgtcaattggaagacaaggtcga
gtacaagttgaagatatcgtcttcttgattcgaaaggacccaaggaagtttgccagggtt
aaagacttgcttactatgaatgaagaattgaaacgagctagaaaagcatttgatgaagca
aattatggatcttga

>gi568815597r:108964526_109175066|GENSCAN_predicted_peptide_6|229_aa
MELYESNLEGMAGVGLSEMRKAGAGWFLISFATFRRSLTRFPSGVRKSSSRAVTEAAGAA
SSPAVLEFSQVEAQDDENLIGARRKDLVTTAKYEAFEIAFFLPYVNTQFPELDNRLATPD
SVRRSPLGPCSCVLRLLPVTSARIGKCQAGAPPSPPLLPLNPDPLPRSRASRHDERRCDW
NQAACCCGNCLCCNGLLRPVYKMNSKAPKSSTANQGDGDEEPVGDLNPV

>gi568815597r:108964526_109175066|GENSCAN_predicted_CDS_6|690_bp
atggagctctatgagagtaatttggaaggaatggcaggggtgggattatcagaaatgagg
aaagcaggagctggatggttcctcatttcatttgcaacgttcagacgcagtctgactaga
tttccatccggagtaaggaagagcagctcaagggcagtcacggaggccgcaggtgcggct
tcttcacccgcggtgctggagttctctcaagtggaagcccaggacgatgaaaacctcata
ggggcacgcagaaaagacttagttaccacggccaagtacgaagccttcgagatagcgttc
ttcttaccctacgtaaacacgcagtttcccgagctcgacaatcggctagccactcctgat
agcgttcggcgctcgcctctcggcccttgctcctgcgtactacggcttcttccagtcacc
tcggcccggatcgggaagtgtcaagcgggcgctcccccatctccgccgctattaccactg
aacccggaccccctacccaggtccagggccagccgccatgacgaacgccgctgtgattgg
aaccaggctgcatgctgctgtggcaattgcttgtgttgtaatggccttttacgtcctgtt
tataaaatgaattccaaagcacccaagtcatcaactgccaaccaaggggacggggatgaa
gaacctgttggagacctgaacccagtgtag

>gi568815597r:108964526_109175066|GENSCAN_predicted_peptide_7|247_aa
MAAAAAGARGVGAGERAPGKLPYKNPTHLAQQQEPWSRLNSTPTITSMRRDAYYFDPEIP
KDDLDFRLAALYNHHTGTFKNKSEILLNQKTTQDTYRTKIQFPGEFLTPPTPPITFLANI
RHWINPKKESIHSIQGSIEICLIMPETLSQSSQGRVMTIPYQPMPAKSPVICAGGQDRCS
KAVGYPRGTRDLEGPPLDAYSIQGQHIISPLDLAKLNQVARQQSHFAMMHGGTGFTRIDS
SSPEVKG

>gi568815597r:108964526_109175066|GENSCAN_predicted_CDS_7|744_bp
atggcagccgccgccgctggtgcgcgcggcgtgggcgcgggagagcgcgcgcccgggaaa
ttgccatataagaacccaacacaccttgctcagcagcaggaaccctggagtcggctcaac
tcaacccccacaattacttccatgaggcgggatgcctactattttgatcccgagatacca
aaggatgacctggacttccgcttagcagccttgtacaaccaccacactgggacattcaag
aacaaaagtgagatactgttaaaccagaaaaccacgcaggatacctatagaaccaagatc
caattccctggagaatttttaacccctcccactccacccatcactttcctggctaacatc
agacactggatcaaccctaaaaaggagtccatccacagcatccaaggatccatagagatc
tgcctgatcatgccggaaacgctctcccagtcttcccaggggagagtcatgaccattcca
taccagcccatgccggccaagtccccagtcatctgcgcgggcggccaagatcgttgcagc
aaggctgtgggctacccccgaggcacccgtgacctggagggaccacctctagatgcctac
tcgattcaaggacaacacatcatttctccgcttgatctggccaagctgaaccaggtggca
agacaacaatctcactttgccatgatgcacggcgggaccggattcacccgaattgactcc
agttctccagaggtgaaaggctaa

>gi568815597r:108964526_109175066|GENSCAN_predicted_peptide_8|266_aa
MLPQAKEIKDGWLSPEARAEAGARFSLVASEGTSPANTLILGFWHPELCDNKFLLFKATQ
SVALCYSSPERRMQAPLRFSGMKYIHTVVLPSAPPSSLSTELSYKIEMLYSSNIFSSLKA
SAVPQTQYSEYHYEYTACDSTGSRWRVAVPHTPGLCTSLPDPIKGTECSFSCNAGEFLDM
KDQSCKPCAEGRYSLGTGIRFDEWDELPHGFASLSANMELDDSAAESTGNCTSDEELEAQ
QGYDLLFVIRFTAGEIEIRTQASTAP

>gi568815597r:108964526_109175066|GENSCAN_predicted_CDS_8|801_bp
atgctgccacaagccaaggaaatcaaggatggctggctgtcccccgaagccagggcagaa
gcaggggccagattctcccttgtggcttccgaaggaaccagccctgccaacaccttgatt
ttgggcttctggcatccagaactgtgcgacaacaaatttctattgttcaaagccacccag
tctgtggcactttgttacagcagccctgaaagacgaatgcaggcacctctacggttcagt
ggcatgaagtacattcacactgttgtgctaccatcggcaccaccatcgtcattatccaca
gaactgtcttacaaaattgaaatgctgtactcatcaaacatttttagcagcttgaaagcc
agtgctgtgccccagacacagtattctgagtaccactatgagtacacggcgtgtgacagc
acgggttccaggtggagggtcgccgtgccgcataccccgggcctgtgcaccagcctgcct
gaccccatcaagggcaccgagtgctccttctcctgcaacgccggggagtttctggatatg
aaggaccagtcatgtaagccatgcgctgagggccgctactccctcggcacaggcattcgg
tttgatgagtgggatgagctgccccatggctttgccagcctctcagccaacatggagctg
gatgacagtgctgctgagtccaccgggaactgtacttcagacgaggaactggaagctcag
caaggttatgacctgctctttgttatccggtttacagccggcgagattgaaattcgaacc
caagcttccactgctccataa

>gi568815597r:108964526_109175066|GENSCAN_predicted_peptide_9|165_aa
MTRSKWVPRGDYIASNTDECTATLMYAVNLKQSGTVNFEYYYPDSSIIFEFFVQNDQCQP
NADDSRWMKTTEKGWEFHSVELNRGNNVLYWRTTAFSVWTKVPKPVLVRNIAITGVAYTS
ECFPCKPGTYADKQGSSFCKLCPANSYSNKGETSCHQCDPDKYSX

>gi568815597r:108964526_109175066|GENSCAN_predicted_CDS_9|495_bp
atgaccaggtccaagtgggttccccggggcgactacatcgcctccaacacggacgaatgc
acagccacactgatgtacgccgtcaacctgaagcaatctggcaccgttaacttcgaatac
tactatccagactccagcatcatctttgagtttttcgttcagaatgaccagtgccagccc
aatgcagatgactccaggtggatgaagaccacagagaaaggatgggaattccacagtgtg
gagctaaatcgaggcaataatgtcctctattggagaaccacagccttctcagtatggacc
aaagtacccaagcctgtgctggtgagaaacattgccataacaggggtggcctacacttca
gaatgcttcccctgcaaacctggcacgtatgcagacaagcagggctcctctttctgcaaa
ctttgcccagccaactcttattcaaataaaggagaaacttcttgccaccagtgtgaccct
gacaaatactcagnn