FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6878, 200 aa 1>>>pF1KB6878 200 - 200 aa - 200 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3620+/-0.000672; mu= 9.8252+/- 0.041 mean_var=91.3740+/-18.376, 0's: 0 Z-trim(112.1): 11 B-trim: 0 in 0/54 Lambda= 0.134172 statistics sampled from 12950 (12956) to 12950 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.398), width: 16 Scan time: 1.930 The best scores are: opt bits E(32554) CCDS6963.1 MED22 gene_id:6837|Hs108|chr9 ( 200) 1291 258.9 1.5e-69 CCDS6964.1 MED22 gene_id:6837|Hs108|chr9 ( 140) 859 175.2 1.6e-44 >>CCDS6963.1 MED22 gene_id:6837|Hs108|chr9 (200 aa) initn: 1291 init1: 1291 opt: 1291 Z-score: 1362.2 bits: 258.9 E(32554): 1.5e-69 Smith-Waterman score: 1291; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KB6 MAQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MAQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 MHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 DEISIDLYELEEEYYSSSSSLCEANDLPLCEAYGRLDLDTDSADGLSAPLLASPEPSAGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 DEISIDLYELEEEYYSSSSSLCEANDLPLCEAYGRLDLDTDSADGLSAPLLASPEPSAGP 130 140 150 160 170 180 190 200 pF1KB6 LQVAAPAHSHAGGPGPTEHA :::::::::::::::::::: CCDS69 LQVAAPAHSHAGGPGPTEHA 190 200 >>CCDS6964.1 MED22 gene_id:6837|Hs108|chr9 (140 aa) initn: 859 init1: 859 opt: 859 Z-score: 912.6 bits: 175.2 E(32554): 1.6e-44 Smith-Waterman score: 859; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137) 10 20 30 40 50 60 pF1KB6 MAQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MAQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 MHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 DEISIDLYELEEEYYSSSSSLCEANDLPLCEAYGRLDLDTDSADGLSAPLLASPEPSAGP ::::::::::::::::: CCDS69 DEISIDLYELEEEYYSSRYK 130 140 200 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 00:18:50 2016 done: Sat Nov 5 00:18:51 2016 Total Scan time: 1.930 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]