Result of FASTA (omim) for pF1KE0124
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0124, 327 aa
  1>>>pF1KE0124 327 - 327 aa - 327 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8102+/-0.000294; mu= 6.8703+/- 0.019
 mean_var=156.0650+/-32.642, 0's: 0 Z-trim(122.2): 11  B-trim: 1329 in 1/57
 Lambda= 0.102665
 statistics sampled from 39877 (39888) to 39877 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.468), width:  16
 Scan time:  9.140

The best scores are:                                      opt bits E(85289)
NP_055083 (OMIM: 605789,616734) microtubule-associ ( 327) 2202 337.1 3.1e-92
NP_001137299 (OMIM: 605789,616734) microtubule-ass ( 315) 1930 296.8   4e-80
NP_001137298 (OMIM: 605789,616734) microtubule-ass ( 284) 1898 292.0   1e-78
NP_001243349 (OMIM: 605789,616734) microtubule-ass ( 274) 1646 254.7 1.7e-67
NP_036458 (OMIM: 605788) microtubule-associated pr ( 281) 1142 180.0   5e-45
NP_001289979 (OMIM: 605788) microtubule-associated ( 281) 1142 180.0   5e-45
NP_036457 (OMIM: 603108) microtubule-associated pr ( 268) 1018 161.6 1.6e-39
XP_011526998 (OMIM: 603108) PREDICTED: microtubule ( 268) 1018 161.6 1.6e-39
XP_011531002 (OMIM: 605788) PREDICTED: microtubule ( 266)  849 136.6 5.6e-32
XP_016859086 (OMIM: 605788) PREDICTED: microtubule ( 266)  849 136.6 5.6e-32
XP_006712030 (OMIM: 605788) PREDICTED: microtubule ( 266)  849 136.6 5.6e-32


>>NP_055083 (OMIM: 605789,616734) microtubule-associated  (327 aa)
 initn: 2202 init1: 2202 opt: 2202  Z-score: 1776.9  bits: 337.1 E(85289): 3.1e-92
Smith-Waterman score: 2202; 99.7% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KE0 MPGPTQTLSPNGENNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MPGPTQTLSPNGENNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSTKRASSSGSASKSDKDL
       :::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
NP_055 PPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 ETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYAS
              250       260       270       280       290       300

              310       320       
pF1KE0 EEHEGHTEEPEAEEQAHEQQPPQQEEY
       :::::::::::::::::::::::::::
NP_055 EEHEGHTEEPEAEEQAHEQQPPQQEEY
              310       320       

>>NP_001137299 (OMIM: 605789,616734) microtubule-associa  (315 aa)
 initn: 1926 init1: 1926 opt: 1930  Z-score: 1559.4  bits: 296.8 E(85289): 4e-80
Smith-Waterman score: 1930; 91.2% identity (94.1% similar) in 320 aa overlap (8-327:1-315)

               10        20        30        40        50        60
pF1KE0 MPGPTQTLSPNGENNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSR
              .. : ...  . : :..   : ::         ::::::::::::::::::::
NP_001        MKQNRDQKCPVSQRNSSFQQPGRKPGCS-----SWGMAVNVYSTSITQETMSR
                      10        20             30        40        

               70        80        90       100       110       120
pF1KE0 HDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKL
       50        60        70        80        90       100        

              130       140       150       160       170       180
pF1KE0 LQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIP
      110       120       130       140       150       160        

              190       200       210       220       230       240
pF1KE0 PPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSTKRASSSGSASKSDKDL
       :::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
NP_001 PPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKDL
      170       180       190       200       210       220        

              250       260       270       280       290       300
pF1KE0 ETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYAS
      230       240       250       260       270       280        

              310       320       
pF1KE0 EEHEGHTEEPEAEEQAHEQQPPQQEEY
       :::::::::::::::::::::::::::
NP_001 EEHEGHTEEPEAEEQAHEQQPPQQEEY
      290       300       310     

>>NP_001137298 (OMIM: 605789,616734) microtubule-associa  (284 aa)
 initn: 1898 init1: 1898 opt: 1898  Z-score: 1534.4  bits: 292.0 E(85289): 1e-78
Smith-Waterman score: 1898; 99.6% identity (100.0% similar) in 284 aa overlap (44-327:1-284)

            20        30        40        50        60        70   
pF1KE0 NNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSL
                                     ::::::::::::::::::::::::::::::
NP_001                               MAVNVYSTSITQETMSRHDIIAWVNDIVSL
                                             10        20        30

            80        90       100       110       120       130   
pF1KE0 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KE0 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
              100       110       120       130       140       150

           200       210       220       230       240       250   
pF1KE0 KSHHANSPTAGAAKSSPAAKPGSTPSRPSSTKRASSSGSASKSDKDLETQVIQLNEQVHS
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_001 KSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKDLETQVIQLNEQVHS
              160       170       180       190       200       210

           260       270       280       290       300       310   
pF1KE0 LKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTEEPEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTEEPEAE
              220       230       240       250       260       270

           320       
pF1KE0 EQAHEQQPPQQEEY
       ::::::::::::::
NP_001 EQAHEQQPPQQEEY
              280    

>>NP_001243349 (OMIM: 605789,616734) microtubule-associa  (274 aa)
 initn: 1646 init1: 1646 opt: 1646  Z-score: 1332.9  bits: 254.7 E(85289): 1.7e-67
Smith-Waterman score: 1646; 99.2% identity (100.0% similar) in 245 aa overlap (83-327:30-274)

             60        70        80        90       100       110  
pF1KE0 ITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEH
                                     .:::::::::::::::::::::::::::::
NP_001  MARTTTTSSRIITGPSFLSGSTQCAGSVPTGAAYCQFMDMLFPGCISLKKVKFQAKLEH
                10        20        30        40        50         

            120       130       140       150       160       170  
pF1KE0 EYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEA
      60        70        80        90       100       110         

            180       190       200       210       220       230  
pF1KE0 RQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSTKRASSSGS
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_001 RQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGS
     120       130       140       150       160       170         

            240       250       260       270       280       290  
pF1KE0 ASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQR
     180       190       200       210       220       230         

            300       310       320       
pF1KE0 LMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEEY
       :::::::::::::::::::::::::::::::::::
NP_001 LMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEEY
     240       250       260       270    

>>NP_036458 (OMIM: 605788) microtubule-associated protei  (281 aa)
 initn: 1173 init1: 880 opt: 1142  Z-score: 929.3  bits: 180.0 E(85289): 5e-45
Smith-Waterman score: 1142; 59.2% identity (83.0% similar) in 289 aa overlap (44-327:1-281)

            20        30        40        50        60        70   
pF1KE0 NNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSL
                                     :::::::::.:.:..::::..::::: . :
NP_036                               MAVNVYSTSVTSENLSRHDMLAWVNDSLHL
                                             10        20        30

            80        90       100       110       120       130   
pF1KE0 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
       ::::.::::::::::::::::::::. :.:::::::::::::::::.:::.::.:.:::.
NP_036 NYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKI
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KE0 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
       :::::::::.::::..::::::::.:::::::.:.:. ::::::. :::.::.::::  :
NP_036 IPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNPGDQIFNKSK
              100       110       120       130       140       150

           200       210        220           230       240        
pF1KE0 KSHHANSPTAGAAKSSPAA-KPGSTPSRPSSTKRA----SSSGSASKSDKDLETQVIQLN
       :   .  :     ..::.. :  .: .: :..       ..  :: .. .. ..:...::
NP_036 KLIGTAVPQ----RTSPTGPKNMQTSGRLSNVAPPCILRKNPPSARNGGHETDAQILELN
                  160       170       180       190       200      

      250       260       270       280       290       300        
pF1KE0 EQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTE
       .:. .:::...:.::::::::.:::.:::.:::: .::. ... .. ::::.::  .  :
NP_036 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEGFAPPE
        210       220       230       240       250       260      

      310       320       
pF1KE0 EPEAEEQAHEQQPPQQEEY
       . : ::  :.:.  .:.::
NP_036 DDEIEE--HQQE--DQDEY
        270           280 

>>NP_001289979 (OMIM: 605788) microtubule-associated pro  (281 aa)
 initn: 1173 init1: 880 opt: 1142  Z-score: 929.3  bits: 180.0 E(85289): 5e-45
Smith-Waterman score: 1142; 59.2% identity (83.0% similar) in 289 aa overlap (44-327:1-281)

            20        30        40        50        60        70   
pF1KE0 NNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSL
                                     :::::::::.:.:..::::..::::: . :
NP_001                               MAVNVYSTSVTSENLSRHDMLAWVNDSLHL
                                             10        20        30

            80        90       100       110       120       130   
pF1KE0 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
       ::::.::::::::::::::::::::. :.:::::::::::::::::.:::.::.:.:::.
NP_001 NYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKI
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KE0 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
       :::::::::.::::..::::::::.:::::::.:.:. ::::::. :::.::.::::  :
NP_001 IPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNPGDQIFNKSK
              100       110       120       130       140       150

           200       210        220           230       240        
pF1KE0 KSHHANSPTAGAAKSSPAA-KPGSTPSRPSSTKRA----SSSGSASKSDKDLETQVIQLN
       :   .  :     ..::.. :  .: .: :..       ..  :: .. .. ..:...::
NP_001 KLIGTAVPQ----RTSPTGPKNMQTSGRLSNVAPPCILRKNPPSARNGGHETDAQILELN
                  160       170       180       190       200      

      250       260       270       280       290       300        
pF1KE0 EQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTE
       .:. .:::...:.::::::::.:::.:::.:::: .::. ... .. ::::.::  .  :
NP_001 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEGFAPPE
        210       220       230       240       250       260      

      310       320       
pF1KE0 EPEAEEQAHEQQPPQQEEY
       . : ::  :.:.  .:.::
NP_001 DDEIEE--HQQE--DQDEY
        270           280 

>>NP_036457 (OMIM: 603108) microtubule-associated protei  (268 aa)
 initn: 1050 init1: 784 opt: 1018  Z-score: 830.4  bits: 161.6 E(85289): 1.6e-39
Smith-Waterman score: 1021; 55.7% identity (79.1% similar) in 282 aa overlap (44-313:1-267)

            20        30        40        50        60        70   
pF1KE0 NNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSL
                                     :::::::::.:....::::..::.:. ..:
NP_036                               MAVNVYSTSVTSDNLSRHDMLAWINESLQL
                                             10        20        30

            80        90       100       110       120       130   
pF1KE0 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
       : ::.::::::::::::::::::: :.:::::::::::::::.:::.:::.::::.:::.
NP_036 NLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KE0 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
       :::.:::::.::::..:.::::::.:::::::.:::: :::::..   :.     .: ::
NP_036 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPK
              100       110       120       130       140       150

           200       210       220       230           240         
pF1KE0 KSHHANSPTAGAAKSSPAAKPGSTPSRPSSTKRASSSGSAS----KSDKDL---ETQVIQ
       :               : .. ...:.:: ::.:.... .:.    ...  .   . .. .
NP_036 K---------------PLTSSSAAPQRPISTQRTAAAPKAGPGVVRKNPGVGNGDDEAAE
                             160       170       180       190     

        250       260       270       280       290       300      
pF1KE0 LNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEE----
       : .::. :::..: .::::::::::::.:::.:::.  ::: ..::..:::::..:    
NP_036 LMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVI
         200       210       220       230       240       250     

             310       320       
pF1KE0 -HEGHTEEPEAEEQAHEQQPPQQEEY
         ::  .: . :              
NP_036 PDEGGPQEEQEEY             
         260                     

>>XP_011526998 (OMIM: 603108) PREDICTED: microtubule-ass  (268 aa)
 initn: 1050 init1: 784 opt: 1018  Z-score: 830.4  bits: 161.6 E(85289): 1.6e-39
Smith-Waterman score: 1021; 55.7% identity (79.1% similar) in 282 aa overlap (44-313:1-267)

            20        30        40        50        60        70   
pF1KE0 NNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSL
                                     :::::::::.:....::::..::.:. ..:
XP_011                               MAVNVYSTSVTSDNLSRHDMLAWINESLQL
                                             10        20        30

            80        90       100       110       120       130   
pF1KE0 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
       : ::.::::::::::::::::::: :.:::::::::::::::.:::.:::.::::.:::.
XP_011 NLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KE0 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
       :::.:::::.::::..:.::::::.:::::::.:::: :::::..   :.     .: ::
XP_011 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPK
              100       110       120       130       140       150

           200       210       220       230           240         
pF1KE0 KSHHANSPTAGAAKSSPAAKPGSTPSRPSSTKRASSSGSAS----KSDKDL---ETQVIQ
       :               : .. ...:.:: ::.:.... .:.    ...  .   . .. .
XP_011 K---------------PLTSSSAAPQRPISTQRTAAAPKAGPGVVRKNPGVGNGDDEAAE
                             160       170       180       190     

        250       260       270       280       290       300      
pF1KE0 LNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEE----
       : .::. :::..: .::::::::::::.:::.:::.  ::: ..::..:::::..:    
XP_011 LMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVI
         200       210       220       230       240       250     

             310       320       
pF1KE0 -HEGHTEEPEAEEQAHEQQPPQQEEY
         ::  .: . :              
XP_011 PDEGGPQEEQEEY             
         260                     

>>XP_011531002 (OMIM: 605788) PREDICTED: microtubule-ass  (266 aa)
 initn: 1130 init1: 837 opt: 849  Z-score: 695.1  bits: 136.6 E(85289): 5.6e-32
Smith-Waterman score: 1097; 57.4% identity (82.0% similar) in 284 aa overlap (44-327:1-266)

            20        30        40        50        60        70   
pF1KE0 NNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSL
                                     :::::::::.:.:..::::..::::: . :
XP_011                               MAVNVYSTSVTSENLSRHDMLAWVNDSLHL
                                             10        20        30

            80        90       100       110       120       130   
pF1KE0 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
       ::::.::::::::::::::::::::. :.:::::::::::::::::.:::.::.:.:::.
XP_011 NYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKI
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KE0 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
       :::::::::.::::..::::::::.:::::::.:.:. ::::::. :::.:      .:.
XP_011 IPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNP------VPQ
              100       110       120       130       140          

           200       210       220       230       240       250   
pF1KE0 KSHHANSPTAGAAKSSPAAKPGSTPSRPSSTKRASSSGSASKSDKDLETQVIQLNEQVHS
       ..    :::.    .. .   . .:  :   ..  .  :: .. .. ..:...::.:. .
XP_011 RT----SPTGPKNMQTSGRLSNVAP--PCILRK--NPPSARNGGHETDAQILELNQQLVD
              150       160         170         180       190      

           260       270       280       290       300       310   
pF1KE0 LKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTEEPEAE
       :::...:.::::::::.:::.:::.:::: .::. ... .. ::::.::  .  :. : :
XP_011 LKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEGFAPPEDDEIE
        200       210       220       230       240       250      

           320       
pF1KE0 EQAHEQQPPQQEEY
       :  :.:.  .:.::
XP_011 E--HQQE--DQDEY
          260        

>>XP_016859086 (OMIM: 605788) PREDICTED: microtubule-ass  (266 aa)
 initn: 1130 init1: 837 opt: 849  Z-score: 695.1  bits: 136.6 E(85289): 5.6e-32
Smith-Waterman score: 1097; 57.4% identity (82.0% similar) in 284 aa overlap (44-327:1-266)

            20        30        40        50        60        70   
pF1KE0 NNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSL
                                     :::::::::.:.:..::::..::::: . :
XP_016                               MAVNVYSTSVTSENLSRHDMLAWVNDSLHL
                                             10        20        30

            80        90       100       110       120       130   
pF1KE0 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
       ::::.::::::::::::::::::::. :.:::::::::::::::::.:::.::.:.:::.
XP_016 NYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKI
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KE0 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
       :::::::::.::::..::::::::.:::::::.:.:. ::::::. :::.:      .:.
XP_016 IPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNP------VPQ
              100       110       120       130       140          

           200       210       220       230       240       250   
pF1KE0 KSHHANSPTAGAAKSSPAAKPGSTPSRPSSTKRASSSGSASKSDKDLETQVIQLNEQVHS
       ..    :::.    .. .   . .:  :   ..  .  :: .. .. ..:...::.:. .
XP_016 RT----SPTGPKNMQTSGRLSNVAP--PCILRK--NPPSARNGGHETDAQILELNQQLVD
              150       160         170         180       190      

           260       270       280       290       300       310   
pF1KE0 LKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTEEPEAE
       :::...:.::::::::.:::.:::.:::: .::. ... .. ::::.::  .  :. : :
XP_016 LKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEGFAPPEDDEIE
        200       210       220       230       240       250      

           320       
pF1KE0 EQAHEQQPPQQEEY
       :  :.:.  .:.::
XP_016 E--HQQE--DQDEY
          260        




327 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:01:01 2016 done: Fri Nov  4 02:01:02 2016
 Total Scan time:  9.140 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com