Result of FASTA (ccds) for pF1KB6527
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6527, 365 aa
  1>>>pF1KB6527 365 - 365 aa - 365 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0506+/-0.00102; mu= 3.5100+/- 0.060
 mean_var=214.7020+/-51.210, 0's: 0 Z-trim(111.2): 110  B-trim: 602 in 1/49
 Lambda= 0.087530
 statistics sampled from 12042 (12157) to 12042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.373), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS2147.1 LIMS2 gene_id:55679|Hs108|chr2          ( 365) 2676 350.8 1.1e-96
CCDS54395.1 LIMS2 gene_id:55679|Hs108|chr2         ( 341) 2489 327.1 1.4e-89
CCDS54396.1 LIMS2 gene_id:55679|Hs108|chr2         ( 363) 2488 327.0 1.6e-89
CCDS54394.1 LIMS2 gene_id:55679|Hs108|chr2         ( 336) 2481 326.1 2.7e-89
CCDS54384.1 LIMS1 gene_id:3987|Hs108|chr2          ( 362) 2204 291.2 9.7e-79
CCDS54383.1 LIMS1 gene_id:3987|Hs108|chr2          ( 329) 2161 285.7 3.9e-77
CCDS54382.1 LIMS1 gene_id:3987|Hs108|chr2          ( 337) 2159 285.4 4.8e-77
CCDS54385.1 LIMS1 gene_id:3987|Hs108|chr2          ( 387) 2159 285.5 5.2e-77
CCDS2078.1 LIMS1 gene_id:3987|Hs108|chr2           ( 325) 2152 284.5 8.6e-77
CCDS58725.1 LIMS2 gene_id:55679|Hs108|chr2         ( 189) 1371 185.7 2.9e-47
CCDS75166.1 PDLIM5 gene_id:10611|Hs108|chr4        ( 271)  470 72.1 6.5e-13
CCDS47102.1 PDLIM5 gene_id:10611|Hs108|chr4        ( 487)  470 72.3 9.9e-13
CCDS4423.1 PDLIM7 gene_id:9260|Hs108|chr5          ( 423)  468 72.0 1.1e-12
CCDS4422.1 PDLIM7 gene_id:9260|Hs108|chr5          ( 457)  468 72.0 1.1e-12
CCDS3641.1 PDLIM5 gene_id:10611|Hs108|chr4         ( 596)  470 72.4 1.1e-12
CCDS58916.1 PDLIM5 gene_id:10611|Hs108|chr4        ( 625)  470 72.4 1.2e-12
CCDS58917.1 PDLIM5 gene_id:10611|Hs108|chr4        ( 483)  448 69.5 6.7e-12
CCDS5035.1 FHL5 gene_id:9457|Hs108|chr6            ( 284)  418 65.5 6.4e-11


>>CCDS2147.1 LIMS2 gene_id:55679|Hs108|chr2               (365 aa)
 initn: 2676 init1: 2676 opt: 2676  Z-score: 1849.2  bits: 350.8 E(32554): 1.1e-96
Smith-Waterman score: 2676; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)

               10        20        30        40        50        60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
              310       320       330       340       350       360

            
pF1KB6 DLNSA
       :::::
CCDS21 DLNSA
            

>>CCDS54395.1 LIMS2 gene_id:55679|Hs108|chr2              (341 aa)
 initn: 2488 init1: 2488 opt: 2489  Z-score: 1721.9  bits: 327.1 E(32554): 1.4e-89
Smith-Waterman score: 2489; 99.7% identity (99.7% similar) in 340 aa overlap (27-365:2-341)

               10        20         30        40        50         
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATG-NMSDALANAVCQRCQARFSPAERIVNSNGEL
                                 :: :::::::::::::::::::::::::::::::
CCDS54                          MTGSNMSDALANAVCQRCQARFSPAERIVNSNGEL
                                        10        20        30     

      60        70        80        90       100       110         
pF1KB6 YHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNW
          40        50        60        70        80        90     

     120       130       140       150       160       170         
pF1KB6 HPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFR
         100       110       120       130       140       150     

     180       190       200       210       220       230         
pF1KB6 SDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGK
         160       170       180       190       200       210     

     240       250       260       270       280       290         
pF1KB6 QWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKA
         220       230       240       250       260       270     

     300       310       320       330       340       350         
pF1KB6 WCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKA
         280       290       300       310       320       330     

     360     
pF1KB6 TDLNSA
       ::::::
CCDS54 TDLNSA
         340 

>>CCDS54396.1 LIMS2 gene_id:55679|Hs108|chr2              (363 aa)
 initn: 2488 init1: 2488 opt: 2488  Z-score: 1720.9  bits: 327.0 E(32554): 1.6e-89
Smith-Waterman score: 2488; 100.0% identity (100.0% similar) in 337 aa overlap (29-365:27-363)

               10        20        30        40        50        60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
                                   ::::::::::::::::::::::::::::::::
CCDS54   MTGRKRKWGETGTGSGAAPAAALRWSNMSDALANAVCQRCQARFSPAERIVNSNGELY
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
      180       190       200       210       220       230        

              250       260       270       280       290       300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
      240       250       260       270       280       290        

              310       320       330       340       350       360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
      300       310       320       330       340       350        

            
pF1KB6 DLNSA
       :::::
CCDS54 DLNSA
      360   

>>CCDS54394.1 LIMS2 gene_id:55679|Hs108|chr2              (336 aa)
 initn: 2481 init1: 2481 opt: 2481  Z-score: 1716.5  bits: 326.1 E(32554): 2.7e-89
Smith-Waterman score: 2481; 100.0% identity (100.0% similar) in 336 aa overlap (30-365:1-336)

               10        20        30        40        50        60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
                                    :::::::::::::::::::::::::::::::
CCDS54                              MSDALANAVCQRCQARFSPAERIVNSNGELY
                                            10        20        30 

               70        80        90       100       110       120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
              40        50        60        70        80        90 

              130       140       150       160       170       180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
             100       110       120       130       140       150 

              190       200       210       220       230       240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
             160       170       180       190       200       210 

              250       260       270       280       290       300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
             220       230       240       250       260       270 

              310       320       330       340       350       360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
             280       290       300       310       320       330 

            
pF1KB6 DLNSA
       :::::
CCDS54 DLNSA
            

>>CCDS54384.1 LIMS1 gene_id:3987|Hs108|chr2               (362 aa)
 initn: 2165 init1: 2165 opt: 2204  Z-score: 1527.1  bits: 291.2 E(32554): 9.7e-79
Smith-Waterman score: 2204; 80.8% identity (92.5% similar) in 360 aa overlap (2-354:3-362)

                10        20               30        40        50  
pF1KB6  MAARLGALAASGLYRRRQHRQS-------PPPATGNMSDALANAVCQRCQARFSPAERI
         : .:  :. :::::::. : .       :    .::..:::.:.:.::.. :.:::.:
CCDS54 MTALQLKELSHSGLYRRRRDRPDSLRVNGLPEEELSNMANALASATCERCKGGFAPAEKI
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB6 VNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVI
       ::::::::::.::::::::. ::::::::::::::::::::::::::: .::::::::::
CCDS54 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVI
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB6 KAMNNNWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVID
       :::::.::: ::::.::.  :::.::::::::::::::::::::.::::::::.:: .::
CCDS54 KAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIID
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KB6 EQPLMFRSDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGR
       ::::.:..: ::::::::..:::::::.::::::::::::::::::::::::::::::::
CCDS54 EQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGR
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB6 VVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDV
       ::::.:::::::::::::::::::::::::.::::::::::::::::::..:..::::::
CCDS54 VVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDV
              250       260       270       280       290       300

            300       310       320       330       340       350  
pF1KB6 VSALNKAWCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTS
       ::::::::::.::.:::::.::::::::::::::::::.::::::::::::::::.:  .
CCDS54 VSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLG
              310       320       330       340       350       360

            360     
pF1KB6 RKAQPKATDLNSA
       ::           
CCDS54 RK           
                    

>>CCDS54383.1 LIMS1 gene_id:3987|Hs108|chr2               (329 aa)
 initn: 2161 init1: 2161 opt: 2161  Z-score: 1498.3  bits: 285.7 E(32554): 3.9e-77
Smith-Waterman score: 2161; 85.4% identity (96.6% similar) in 328 aa overlap (27-354:2-329)

               10        20        30        40        50        60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
                                 : ::..:::.:.:.::.. :.:::.:::::::::
CCDS54                          MTCNMANALASATCERCKGGFAPAEKIVNSNGELY
                                        10        20        30     

               70        80        90       100       110       120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
       ::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
CCDS54 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
       : ::::.::.  :::.::::::::::::::::::::.::::::::.:: .::::::.:..
CCDS54 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
       : ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
CCDS54 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
         160       170       180       190       200       210     

              250       260       270       280       290       300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
       ::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
CCDS54 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
         220       230       240       250       260       270     

              310       320       330       340       350       360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
       ::.::.:::::.::::::::::::::::::.::::::::::::::::.:  .::      
CCDS54 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK      
         280       290       300       310       320               

            
pF1KB6 DLNSA

>>CCDS54382.1 LIMS1 gene_id:3987|Hs108|chr2               (337 aa)
 initn: 2159 init1: 2159 opt: 2159  Z-score: 1496.8  bits: 285.4 E(32554): 4.8e-77
Smith-Waterman score: 2159; 85.6% identity (96.9% similar) in 326 aa overlap (29-354:12-337)

               10        20        30        40        50        60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
                                   ::..:::.:.:.::.. :.:::.:::::::::
CCDS54                  MLGVAAGMTHSNMANALASATCERCKGGFAPAEKIVNSNGELY
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
       ::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
CCDS54 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
            50        60        70        80        90       100   

              130       140       150       160       170       180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
       : ::::.::.  :::.::::::::::::::::::::.::::::::.:: .::::::.:..
CCDS54 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
           110       120       130       140       150       160   

              190       200       210       220       230       240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
       : ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
CCDS54 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
           170       180       190       200       210       220   

              250       260       270       280       290       300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
       ::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
CCDS54 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
           230       240       250       260       270       280   

              310       320       330       340       350       360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
       ::.::.:::::.::::::::::::::::::.::::::::::::::::.:  .::      
CCDS54 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK      
           290       300       310       320       330             

            
pF1KB6 DLNSA

>>CCDS54385.1 LIMS1 gene_id:3987|Hs108|chr2               (387 aa)
 initn: 2159 init1: 2159 opt: 2159  Z-score: 1496.0  bits: 285.5 E(32554): 5.2e-77
Smith-Waterman score: 2159; 85.6% identity (96.9% similar) in 326 aa overlap (29-354:62-387)

                 10        20        30        40        50        
pF1KB6   MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGE
                                     ::..:::.:.:.::.. :.:::.:::::::
CCDS54 TEDERAVSKLQRRHSDVKVYKEFCDFYAKFNMANALASATCERCKGGFAPAEKIVNSNGE
              40        50        60        70        80        90 

       60        70        80        90       100       110        
pF1KB6 LYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNN
       ::::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.
CCDS54 LYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNS
             100       110       120       130       140       150 

      120       130       140       150       160       170        
pF1KB6 WHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMF
       ::: ::::.::.  :::.::::::::::::::::::::.::::::::.:: .::::::.:
CCDS54 WHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIF
             160       170       180       190       200       210 

      180       190       200       210       220       230        
pF1KB6 RSDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALG
       ..: ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:
CCDS54 KNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMG
             220       230       240       250       260       270 

      240       250       260       270       280       290        
pF1KB6 KQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNK
       ::::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::
CCDS54 KQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNK
             280       290       300       310       320       330 

      300       310       320       330       340       350        
pF1KB6 AWCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPK
       ::::.::.:::::.::::::::::::::::::.::::::::::::::::.:  .::    
CCDS54 AWCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK    
             340       350       360       370       380           

      360     
pF1KB6 ATDLNSA

>>CCDS2078.1 LIMS1 gene_id:3987|Hs108|chr2                (325 aa)
 initn: 2152 init1: 2152 opt: 2152  Z-score: 1492.2  bits: 284.5 E(32554): 8.6e-77
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (30-354:1-325)

               10        20        30        40        50        60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
                                    :..:::.:.:.::.. :.:::.:::::::::
CCDS20                              MANALASATCERCKGGFAPAEKIVNSNGELY
                                            10        20        30 

               70        80        90       100       110       120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
       ::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
CCDS20 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
              40        50        60        70        80        90 

              130       140       150       160       170       180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
       : ::::.::.  :::.::::::::::::::::::::.::::::::.:: .::::::.:..
CCDS20 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
             100       110       120       130       140       150 

              190       200       210       220       230       240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
       : ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
CCDS20 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
             160       170       180       190       200       210 

              250       260       270       280       290       300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
       ::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
CCDS20 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
             220       230       240       250       260       270 

              310       320       330       340       350       360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
       ::.::.:::::.::::::::::::::::::.::::::::::::::::.:  .::      
CCDS20 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK      
             280       290       300       310       320           

            
pF1KB6 DLNSA

>>CCDS58725.1 LIMS2 gene_id:55679|Hs108|chr2              (189 aa)
 initn: 1371 init1: 1371 opt: 1371  Z-score: 962.1  bits: 185.7 E(32554): 2.9e-47
Smith-Waterman score: 1371; 100.0% identity (100.0% similar) in 189 aa overlap (177-365:1-189)

        150       160       170       180       190       200      
pF1KB6 CRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRSDAYHPDHFNCTHCGKELTAEARELKG
                                     ::::::::::::::::::::::::::::::
CCDS58                               MFRSDAYHPDHFNCTHCGKELTAEARELKG
                                             10        20        30

        210       220       230       240       250       260      
pF1KB6 ELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGL
               40        50        60        70        80        90

        270       280       290       300       310       320      
pF1KB6 AYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTLKNKFVEFDMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTLKNKFVEFDMK
              100       110       120       130       140       150

        330       340       350       360     
pF1KB6 PVCKRCYEKFPLELKKRLKKLSELTSRKAQPKATDLNSA
       :::::::::::::::::::::::::::::::::::::::
CCDS58 PVCKRCYEKFPLELKKRLKKLSELTSRKAQPKATDLNSA
              160       170       180         




365 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:13:59 2016 done: Fri Nov  4 23:14:00 2016
 Total Scan time:  2.440 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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