Result of FASTA (ccds) for pF1KB6473
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6473, 325 aa
  1>>>pF1KB6473 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1882+/-0.00119; mu= 2.3737+/- 0.069
 mean_var=208.9802+/-49.852, 0's: 0 Z-trim(109.1): 116  B-trim: 1000 in 2/49
 Lambda= 0.088720
 statistics sampled from 10532 (10653) to 10532 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.327), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS2078.1 LIMS1 gene_id:3987|Hs108|chr2           ( 325) 2418 322.3 3.4e-88
CCDS54383.1 LIMS1 gene_id:3987|Hs108|chr2          ( 329) 2418 322.3 3.4e-88
CCDS54382.1 LIMS1 gene_id:3987|Hs108|chr2          ( 337) 2418 322.3 3.4e-88
CCDS54384.1 LIMS1 gene_id:3987|Hs108|chr2          ( 362) 2418 322.3 3.6e-88
CCDS54385.1 LIMS1 gene_id:3987|Hs108|chr2          ( 387) 2418 322.3 3.8e-88
CCDS54394.1 LIMS2 gene_id:55679|Hs108|chr2         ( 336) 2152 288.2 6.1e-78
CCDS54395.1 LIMS2 gene_id:55679|Hs108|chr2         ( 341) 2152 288.2 6.2e-78
CCDS54396.1 LIMS2 gene_id:55679|Hs108|chr2         ( 363) 2152 288.3 6.5e-78
CCDS2147.1 LIMS2 gene_id:55679|Hs108|chr2          ( 365) 2152 288.3 6.5e-78
CCDS58725.1 LIMS2 gene_id:55679|Hs108|chr2         ( 189) 1201 166.3 1.8e-41
CCDS76407.1 LPXN gene_id:9404|Hs108|chr11          ( 366)  514 78.6 8.4e-15
CCDS7969.1 LPXN gene_id:9404|Hs108|chr11           ( 386)  514 78.6 8.8e-15
CCDS53635.1 LPXN gene_id:9404|Hs108|chr11          ( 391)  514 78.6 8.8e-15
CCDS75166.1 PDLIM5 gene_id:10611|Hs108|chr4        ( 271)  462 71.8 6.8e-13
CCDS4423.1 PDLIM7 gene_id:9260|Hs108|chr5          ( 423)  462 72.0 9.4e-13
CCDS4422.1 PDLIM7 gene_id:9260|Hs108|chr5          ( 457)  462 72.0   1e-12
CCDS47102.1 PDLIM5 gene_id:10611|Hs108|chr4        ( 487)  462 72.1   1e-12
CCDS3641.1 PDLIM5 gene_id:10611|Hs108|chr4         ( 596)  462 72.1 1.2e-12
CCDS58916.1 PDLIM5 gene_id:10611|Hs108|chr4        ( 625)  462 72.2 1.3e-12
CCDS30678.1 FHL3 gene_id:2275|Hs108|chr1           ( 280)  455 70.9 1.3e-12
CCDS58917.1 PDLIM5 gene_id:10611|Hs108|chr4        ( 483)  437 68.9 9.6e-12
CCDS10713.1 TGFB1I1 gene_id:7041|Hs108|chr16       ( 444)  414 65.9 6.9e-11


>>CCDS2078.1 LIMS1 gene_id:3987|Hs108|chr2                (325 aa)
 initn: 2418 init1: 2418 opt: 2418  Z-score: 1697.0  bits: 322.3 E(32554): 3.4e-88
Smith-Waterman score: 2418; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KB6 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 HDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 HDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 CHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 CHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 CLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 CLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 ETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVC
              250       260       270       280       290       300

              310       320     
pF1KB6 KKCYEKFPLELKKRLKKLAETLGRK
       :::::::::::::::::::::::::
CCDS20 KKCYEKFPLELKKRLKKLAETLGRK
              310       320     

>>CCDS54383.1 LIMS1 gene_id:3987|Hs108|chr2               (329 aa)
 initn: 2418 init1: 2418 opt: 2418  Z-score: 1696.9  bits: 322.3 E(32554): 3.4e-88
Smith-Waterman score: 2418; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:5-329)

                   10        20        30        40        50      
pF1KB6     MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR
           ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MTCNMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 KYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRH
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB6 LCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELK
              130       140       150       160       170       180

        180       190       200       210       220       230      
pF1KB6 GELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKG
              190       200       210       220       230       240

        240       250       260       270       280       290      
pF1KB6 LAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDM
              250       260       270       280       290       300

        300       310       320     
pF1KB6 KPVCKKCYEKFPLELKKRLKKLAETLGRK
       :::::::::::::::::::::::::::::
CCDS54 KPVCKKCYEKFPLELKKRLKKLAETLGRK
              310       320         

>>CCDS54382.1 LIMS1 gene_id:3987|Hs108|chr2               (337 aa)
 initn: 2418 init1: 2418 opt: 2418  Z-score: 1696.7  bits: 322.3 E(32554): 3.4e-88
Smith-Waterman score: 2418; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:13-337)

                           10        20        30        40        
pF1KB6             MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MLGVAAGMTHSNMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KB6 LFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIG
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KB6 FVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKEL
              130       140       150       160       170       180

      170       180       190       200       210       220        
pF1KB6 TADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLG
              190       200       210       220       230       240

      230       240       250       260       270       280        
pF1KB6 HRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLK
              250       260       270       280       290       300

      290       300       310       320     
pF1KB6 NKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
       :::::::::::::::::::::::::::::::::::::
CCDS54 NKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
              310       320       330       

>>CCDS54384.1 LIMS1 gene_id:3987|Hs108|chr2               (362 aa)
 initn: 2418 init1: 2418 opt: 2418  Z-score: 1696.3  bits: 322.3 E(32554): 3.6e-88
Smith-Waterman score: 2418; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:38-362)

                                             10        20        30
pF1KB6                               MANALASATCERCKGGFAPAEKIVNSNGEL
                                     ::::::::::::::::::::::::::::::
CCDS54 ELSHSGLYRRRRDRPDSLRVNGLPEEELSNMANALASATCERCKGGFAPAEKIVNSNGEL
        10        20        30        40        50        60       

               40        50        60        70        80        90
pF1KB6 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSW
        70        80        90       100       110       120       

              100       110       120       130       140       150
pF1KB6 HPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFK
       130       140       150       160       170       180       

              160       170       180       190       200       210
pF1KB6 NDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGK
       190       200       210       220       230       240       

              220       230       240       250       260       270
pF1KB6 QWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKA
       250       260       270       280       290       300       

              280       290       300       310       320     
pF1KB6 WCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
       310       320       330       340       350       360  

>>CCDS54385.1 LIMS1 gene_id:3987|Hs108|chr2               (387 aa)
 initn: 2418 init1: 2418 opt: 2418  Z-score: 1696.0  bits: 322.3 E(32554): 3.8e-88
Smith-Waterman score: 2418; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:63-387)

                                             10        20        30
pF1KB6                               MANALASATCERCKGGFAPAEKIVNSNGEL
                                     ::::::::::::::::::::::::::::::
CCDS54 EDERAVSKLQRRHSDVKVYKEFCDFYAKFNMANALASATCERCKGGFAPAEKIVNSNGEL
             40        50        60        70        80        90  

               40        50        60        70        80        90
pF1KB6 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSW
            100       110       120       130       140       150  

              100       110       120       130       140       150
pF1KB6 HPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFK
            160       170       180       190       200       210  

              160       170       180       190       200       210
pF1KB6 NDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGK
            220       230       240       250       260       270  

              220       230       240       250       260       270
pF1KB6 QWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKA
            280       290       300       310       320       330  

              280       290       300       310       320     
pF1KB6 WCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
            340       350       360       370       380       

>>CCDS54394.1 LIMS2 gene_id:55679|Hs108|chr2              (336 aa)
 initn: 2152 init1: 2152 opt: 2152  Z-score: 1512.8  bits: 288.2 E(32554): 6.1e-78
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KB6 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE
       :..:::.:.:.::.. :.:::.:::::::::::.::::::::. ::::::::::::::::
CCDS54 MSDALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 HDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRP
       ::::::::::: .:::::::::::::::.::: ::::.::.  :::.:::::::::::::
CCDS54 HDFQMLFAPCCGSCGEFIIGRVIKAMNNNWHPGCFRCELCDVELADLGFVKNAGRHLCRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 CHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELY
       :::::::.::::::::.:: .::::::.:..: ::::::::..:::::::.:::::::::
CCDS54 CHNREKAKGLGKYICQRCHLVIDEQPLMFRSDAYHPDHFNCTHCGKELTAEARELKGELY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 CLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYC
       :::::::::::::::::::::::::::.:::::::::::::::::::::::::.::::::
CCDS54 CLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVC
       ::::::::::::..:..::::::::::::::::.::.:::::.:::::::::::::::::
CCDS54 ETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTLKNKFVEFDMKPVC
              250       260       270       280       290       300

              310       320                
pF1KB6 KKCYEKFPLELKKRLKKLAETLGRK           
       :.::::::::::::::::.:  .::           
CCDS54 KRCYEKFPLELKKRLKKLSELTSRKAQPKATDLNSA
              310       320       330      

>>CCDS54395.1 LIMS2 gene_id:55679|Hs108|chr2              (341 aa)
 initn: 2152 init1: 2152 opt: 2152  Z-score: 1512.7  bits: 288.2 E(32554): 6.2e-78
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (1-325:6-330)

                    10        20        30        40        50     
pF1KB6      MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEG
            :..:::.:.:.::.. :.:::.:::::::::::.::::::::. :::::::::::
CCDS54 MTGSNMSDALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEG
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB6 RKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGR
       :::::::::::::::: .:::::::::::::::.::: ::::.::.  :::.::::::::
CCDS54 RKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWHPGCFRCELCDVELADLGFVKNAGR
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB6 HLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAREL
       ::::::::::::.::::::::.:: .::::::.:..: ::::::::..:::::::.::::
CCDS54 HLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRSDAYHPDHFNCTHCGKELTAEAREL
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB6 KGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERK
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::.:
CCDS54 KGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKK
              190       200       210       220       230       240

         240       250       260       270       280       290     
pF1KB6 GLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFD
       :::::::::::::::::..:..::::::::::::::::.::.:::::.::::::::::::
CCDS54 GLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTLKNKFVEFD
              250       260       270       280       290       300

         300       310       320                
pF1KB6 MKPVCKKCYEKFPLELKKRLKKLAETLGRK           
       ::::::.::::::::::::::::.:  .::           
CCDS54 MKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKATDLNSA
              310       320       330       340 

>>CCDS54396.1 LIMS2 gene_id:55679|Hs108|chr2              (363 aa)
 initn: 2152 init1: 2152 opt: 2152  Z-score: 1512.3  bits: 288.3 E(32554): 6.5e-78
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (1-325:28-352)

                                          10        20        30   
pF1KB6                            MANALASATCERCKGGFAPAEKIVNSNGELYHE
                                  :..:::.:.:.::.. :.:::.:::::::::::
CCDS54 MTGRKRKWGETGTGSGAAPAAALRWSNMSDALANAVCQRCQARFSPAERIVNSNGELYHE
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KB6 QCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPE
       .::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::: 
CCDS54 HCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWHPG
               70        80        90       100       110       120

           100       110       120       130       140       150   
pF1KB6 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDP
       ::::.::.  :::.::::::::::::::::::::.::::::::.:: .::::::.:..: 
CCDS54 CFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRSDA
              130       140       150       160       170       180

           160       170       180       190       200       210   
pF1KB6 YHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWH
       ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::::
CCDS54 YHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWH
              190       200       210       220       230       240

           220       230       240       250       260       270   
pF1KB6 VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCV
       ::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::::
CCDS54 VEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCV
              250       260       270       280       290       300

           280       290       300       310       320             
pF1KB6 NCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK        
       .::.:::::.::::::::::::::::::.::::::::::::::::.:  .::        
CCDS54 SCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKATDL
              310       320       330       340       350       360

CCDS54 NSA
          

>>CCDS2147.1 LIMS2 gene_id:55679|Hs108|chr2               (365 aa)
 initn: 2152 init1: 2152 opt: 2152  Z-score: 1512.3  bits: 288.3 E(32554): 6.5e-78
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (1-325:30-354)

                                            10        20        30 
pF1KB6                              MANALASATCERCKGGFAPAEKIVNSNGELY
                                    :..:::.:.:.::.. :.:::.:::::::::
CCDS21 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
               10        20        30        40        50        60

              40        50        60        70        80        90 
pF1KB6 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
       ::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
CCDS21 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
               70        80        90       100       110       120

             100       110       120       130       140       150 
pF1KB6 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
       : ::::.::.  :::.::::::::::::::::::::.::::::::.:: .::::::.:..
CCDS21 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
              130       140       150       160       170       180

             160       170       180       190       200       210 
pF1KB6 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
       : ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
CCDS21 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
              190       200       210       220       230       240

             220       230       240       250       260       270 
pF1KB6 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
       ::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
CCDS21 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
              250       260       270       280       290       300

             280       290       300       310       320           
pF1KB6 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK      
       ::.::.:::::.::::::::::::::::::.::::::::::::::::.:  .::      
CCDS21 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
              310       320       330       340       350       360

CCDS21 DLNSA
            

>>CCDS58725.1 LIMS2 gene_id:55679|Hs108|chr2              (189 aa)
 initn: 1201 init1: 1201 opt: 1201  Z-score: 858.2  bits: 166.3 E(32554): 1.8e-41
Smith-Waterman score: 1201; 88.2% identity (98.3% similar) in 178 aa overlap (148-325:1-178)

       120       130       140       150       160       170       
pF1KB6 CRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKG
                                     .:..: ::::::::..:::::::.::::::
CCDS58                               MFRSDAYHPDHFNCTHCGKELTAEARELKG
                                             10        20        30

       180       190       200       210       220       230       
pF1KB6 ELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGL
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::.:::
CCDS58 ELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGL
               40        50        60        70        80        90

       240       250       260       270       280       290       
pF1KB6 AYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMK
       :::::::::::::::..:..::::::::::::::::.::.:::::.::::::::::::::
CCDS58 AYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTLKNKFVEFDMK
              100       110       120       130       140       150

       300       310       320                
pF1KB6 PVCKKCYEKFPLELKKRLKKLAETLGRK           
       ::::.::::::::::::::::.:  .::           
CCDS58 PVCKRCYEKFPLELKKRLKKLSELTSRKAQPKATDLNSA
              160       170       180         




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:06:00 2016 done: Fri Nov  4 23:06:01 2016
 Total Scan time:  2.030 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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