Result of FASTA (ccds) for pF1KE0565
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0565, 238 aa
  1>>>pF1KE0565 238 - 238 aa - 238 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4673+/-0.00152; mu= 8.9048+/- 0.093
 mean_var=343.5901+/-66.775, 0's: 0 Z-trim(110.9): 162  B-trim: 28 in 1/49
 Lambda= 0.069192
 statistics sampled from 11792 (11947) to 11792 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.367), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS41591.1 3 gene_id:387266|Hs108|chr11           ( 238) 2071 219.8 1.2e-57
CCDS41592.1 5 gene_id:439915|Hs108|chr11           ( 237) 1334 146.3 1.7e-35
CCDS41684.1 10 gene_id:387273|Hs108|chr11          ( 202) 1270 139.8 1.3e-33
CCDS41683.1 8 gene_id:57830|Hs108|chr11            ( 187) 1103 123.0 1.3e-28
CCDS41682.1 7 gene_id:440050|Hs108|chr11           ( 165) 1049 117.6 5.2e-27
CCDS31330.1 1 gene_id:387264|Hs108|chr11           ( 278) 1021 115.1 4.7e-26
CCDS53677.1 9 gene_id:3846|Hs108|chr11             ( 169)  849 97.6 5.4e-21
CCDS41685.1 11 gene_id:440051|Hs108|chr11          ( 156)  848 97.5 5.6e-21
CCDS31331.1 2 gene_id:440021|Hs108|chr11           ( 177)  816 94.3 5.4e-20
CCDS31332.1 6 gene_id:440023|Hs108|chr11           ( 129)  754 87.9 3.4e-18
CCDS45675.1 11 gene_id:653240|Hs108|chr17          ( 195)  654 78.2 4.2e-15
CCDS54124.1 9 gene_id:100132386|Hs108|chr17        ( 210)  649 77.8 6.2e-15
CCDS32650.1 5 gene_id:85289|Hs108|chr17            ( 181)  641 76.9   1e-14
CCDS32649.1 12 gene_id:83755|Hs108|chr17           ( 201)  635 76.4 1.6e-14
CCDS42331.1 3 gene_id:85290|Hs108|chr17            ( 195)  628 75.7 2.5e-14
CCDS45673.1 7 gene_id:100132476|Hs108|chr17        ( 155)  587 71.4 3.9e-13
CCDS45674.1 8 gene_id:728224|Hs108|chr17           ( 185)  588 71.6 3.9e-13
CCDS42958.1 5 gene_id:386680|Hs108|chr21           ( 271)  573 70.4 1.4e-12
CCDS54125.1 6 gene_id:81871|Hs108|chr17            ( 205)  559 68.8 3.1e-12
CCDS11383.1 4 gene_id:84616|Hs108|chr17            ( 166)  550 67.8 5.2e-12
CCDS42955.1 2 gene_id:386679|Hs108|chr21           ( 255)  522 65.3 4.5e-11


>>CCDS41591.1 3 gene_id:387266|Hs108|chr11                (238 aa)
 initn: 2071 init1: 2071 opt: 2071  Z-score: 1148.2  bits: 219.8 E(32554): 1.2e-57
Smith-Waterman score: 2071; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)

               10        20        30        40        50        60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
              190       200       210       220       230        

>>CCDS41592.1 5 gene_id:439915|Hs108|chr11                (237 aa)
 initn: 1368 init1: 922 opt: 1334  Z-score: 750.7  bits: 146.3 E(32554): 1.7e-35
Smith-Waterman score: 1337; 75.5% identity (79.5% similar) in 220 aa overlap (2-205:20-233)

                                    10        20              30   
pF1KE0                   MGCSGCS---GGCGSSCGGCGSSCGGCG------SGYGGCGS
                          ::.::.   :::::.::::::.:::::      .: :::::
CCDS41 MGCCGCSGGCGSGCGGRGSGCGGCGSGCGGCGSGCGGCGSGCGGCGGCGSGCAGCGGCGS
               10        20        30        40        50        60

            40        50             60        70        80        
pF1KE0 GCCVPVCCCKPVCCCVPACSCSSCG-----SCGGSKGVCGSCGGCKGGCGSCGGSKGGCG
       :::::::::::.:::::::::::::     ::::::  : :::  ::.::::::::::::
CCDS41 GCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGCG
               70        80        90       100       110       120

       90       100         110       120       130       140      
pF1KE0 SSCCVPVCCSSS--CGSCGGSKGVCGFRGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCC
       :      : .:.  ::::::::: ::  ::::::::: :::: :: ::::::::::::::
CCDS41 S------CGGSKGGCGSCGGSKGGCGSCGGSKGGCGSYGCSQSSCCKPCCCSSGCGSSCC
                    130       140       150       160       170    

        150       160       170       180       190       200      
pF1KE0 QSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCS
       ::::::: : ::::::: : :::::::: : :::::::::::: :::: ::::: : :: 
CCDS41 QSSCCKPYCCQSSCCKPYCCQSSCCKPCSCFSGCGSSCCQSSCYKPCCCQSSCCVPVCCQ
          180       190       200       210       220       230    

        210       220       230        
pF1KE0 SGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
                                       
CCDS41 CKI                             
                                       

>>CCDS41684.1 10 gene_id:387273|Hs108|chr11               (202 aa)
 initn: 1431 init1: 876 opt: 1270  Z-score: 716.8  bits: 139.8 E(32554): 1.3e-33
Smith-Waterman score: 1283; 68.0% identity (72.5% similar) in 247 aa overlap (1-238:1-202)

               10        20               30        40        50   
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSG---YG----GCGSGCCVPVCCCKPVCCCVPACS
       ::: ::::::::.::::::.:::::::   ::    ::::.:::::::::::::::::::
CCDS41 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGYGSGCGGCGSSCCVPVCCCKPVCCCVPACS
               10        20        30        40        50        60

            60        70        80        90       100         110 
pF1KE0 CSSCGSCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSS--CGSCGGSKGVC
       :::::::::::: :::::: ::::::::::::::::      : .:.  ::::::::: :
CCDS41 CSSCGSCGGSKGDCGSCGGSKGGCGSCGGSKGGCGS------CGGSKGGCGSCGGSKGGC
               70        80        90             100       110    

             120       130       140       150       160       170 
pF1KE0 GFRGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCC
       :  ::::::::::: :.          .::::           :.        ::: .::
CCDS41 GSCGGSKGGCGSCGGSK----------GGCGS-----------CG--------CSQCNCC
          120       130                                    140     

             180       190       200       210       220       230 
pF1KE0 KPCCCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVP
       ::::::::::: :::::::.::: ::::: : ::         ::::::::  :::::::
CCDS41 KPCCCSSGCGS-CCQSSCCNPCCCQSSCCVPVCC---------QSSCCKPCCCQSSCCVP
         150        160       170                180       190     

              
pF1KE0 ICCQCKI
       .::::::
CCDS41 VCCQCKI
         200  

>>CCDS41683.1 8 gene_id:57830|Hs108|chr11                 (187 aa)
 initn: 2248 init1: 999 opt: 1103  Z-score: 627.0  bits: 123.0 E(32554): 1.3e-28
Smith-Waterman score: 1429; 73.9% identity (75.6% similar) in 238 aa overlap (1-238:1-187)

               10        20        30        40        50        60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
       ::: ::::::::.::::::.::       ::::.::::.:::::::::::::::::::::
CCDS41 MGCCGCSGGCGSGCGGCGSGCG-------GCGSSCCVPICCCKPVCCCVPACSCSSCGSC
               10        20               30        40        50   

               70        80        90       100       110       120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
       :::::  ::::: :: :::::::::                                  :
CCDS41 GGSKGGRGSCGGSKGDCGSCGGSKG----------------------------------G
            60        70                                           

              130       140       150       160       170       180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
       :::::::::::::::::::::::::::::::::          ::::::::::: :::::
CCDS41 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKP----------CCSQSSCCKPCSCSSGC
      80        90       100       110                 120         

              190       200       210       220       230        
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
       :::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
CCDS41 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPICCQCKI
     130       140       150       160       170       180       

>>CCDS41682.1 7 gene_id:440050|Hs108|chr11                (165 aa)
 initn: 1921 init1: 866 opt: 1049  Z-score: 598.4  bits: 117.6 E(32554): 5.2e-27
Smith-Waterman score: 1224; 72.7% identity (74.6% similar) in 205 aa overlap (1-205:1-161)

               10        20        30        40        50        60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
       ::: ::: ::::.::::::.::::::: :::::.::::::::::::::::::::::::::
CCDS41 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
       ::::: :::::: ::::::::::::::::                               
CCDS41 GGSKGGCGSCGGSKGGCGSCGGSKGGCGS-------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
          ::::::::::::::::::::::::::::::          :: ::::::::::::::
CCDS41 ---CGCSQCSCYKPCCCSSGCGSSCCQSSCCKP----------CCCQSSCCKPCCCSSGC
         90       100       110                 120       130      

              190       200       210       220       230        
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
       ::::::::::.::::::::: : ::                                 
CCDS41 GSSCCQSSCCNPCCSQSSCCVPVCCQCKI                             
        140       150       160                                  

>>CCDS31330.1 1 gene_id:387264|Hs108|chr11                (278 aa)
 initn: 2098 init1: 579 opt: 1021  Z-score: 581.2  bits: 115.1 E(32554): 4.7e-26
Smith-Waterman score: 1281; 60.3% identity (68.3% similar) in 287 aa overlap (1-238:1-278)

               10        20        30               40        50   
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGC-------CVPVCCCKPVCCCVPACS
       ::: :::::::::::::::.::::::: :::::::       :::::::::::: ::.::
CCDS31 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
               10        20        30        40        50        60

                 60        70        80        90       100        
pF1KE0 CSSCG-----SCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSS--CGSCGG
       :::::     : ::::: :::::::::::::::::::::::      : .:.  ::::::
CCDS31 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGS------CGGSKGGCGSCGG
               70        80        90       100             110    

        110       120       130        140        150       160    
pF1KE0 SKGVCGFRGGSKGGCGSCGCSQCSCYKP-CCCSSGCG-SSCCQSSCCKPSCSQSSC--C-
       ::: ::   .. :::::  :    : :: :::  .:. ::: ...: . .::...:  : 
CCDS31 SKGGCG---SGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCG
          120          130       140       150       160       170 

               170                180                190           
pF1KE0 --KPCCSQSSCCKPCC---------CSSGCGSS---------CCQSSCCKPC--------
         :  :.. . ::  :         :.::::.          ::. : :  :        
CCDS31 GSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCG
             180       190       200       210       220       230 

             200       210       220       230        
pF1KE0 --CSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
         ::: ::::::::::::::::::::::::: ::::::::.::::::
CCDS31 SSCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
             240       250       260       270        

>>CCDS53677.1 9 gene_id:3846|Hs108|chr11                  (169 aa)
 initn: 1556 init1: 641 opt: 849  Z-score: 490.4  bits: 97.6 E(32554): 5.4e-21
Smith-Waterman score: 1128; 63.0% identity (64.7% similar) in 238 aa overlap (1-238:1-169)

               10        20        30        40        50        60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
       ::: ::::::::::::: ::::.::::  ::: .::.:: ::::::::::::::::::  
CCDS53 MGCCGCSGGCGSSCGGCDSSCGSCGSGCRGCGPSCCAPVYCCKPVCCCVPACSCSSCG--
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
                    : ::::::::::                                  :
CCDS53 -------------KRGCGSCGGSKG----------------------------------G
                    60        70                                   

              130       140       150       160       170       180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
       ::::::::::: ::::::::::::::: ::::: ::: ::::::::          ::: 
CCDS53 CGSCGCSQCSCCKPCCCSSGCGSSCCQCSCCKPYCSQCSCCKPCCS----------SSGR
              80        90       100       110                 120 

              190       200       210       220       230        
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
       :::::::::::::::          ::::::::::::::::: ::: ::::.: ::::
CCDS53 GSSCCQSSCCKPCCS----------SSGCGSSCCQSSCCKPCCSQSRCCVPVCYQCKI
             130                 140       150       160         

>>CCDS41685.1 11 gene_id:440051|Hs108|chr11               (156 aa)
 initn: 1575 init1: 740 opt: 848  Z-score: 490.2  bits: 97.5 E(32554): 5.6e-21
Smith-Waterman score: 1020; 63.9% identity (67.3% similar) in 205 aa overlap (1-205:1-152)

               10        20        30        40        50        60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
       ::: ::::::::.::::::. :::::: :::::.::::.:::::::::::::::::::::
CCDS41 MGCCGCSGGCGSGCGGCGSGSGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGSC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
       :::::          ::::::.:::::::                               
CCDS41 GGSKG----------GCGSCGSSKGGCGS-------------------------------
                         70                                        

              130       140       150       160       170       180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
          ::::: .: :::: :::::: :::::: :: : :::::     ::::::::::.:  
CCDS41 ---CGCSQSNCCKPCCSSSGCGSFCCQSSCSKPCCCQSSCC-----QSSCCKPCCCQS--
         80        90       100       110            120           

              190       200       210       220       230        
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
         ::::::: :::: ::::: : ::                                 
CCDS41 --SCCQSSCFKPCCCQSSCCVPVCCQCKI                             
       130       140       150                                   

>>CCDS31331.1 2 gene_id:440021|Hs108|chr11                (177 aa)
 initn: 1504 init1: 686 opt: 816  Z-score: 472.4  bits: 94.3 E(32554): 5.4e-20
Smith-Waterman score: 1000; 61.3% identity (62.6% similar) in 222 aa overlap (1-201:1-176)

                      10        20        30                       
pF1KE0 MGCSGCS-------GGCGSSCGGCGSSCGGCGSGYGGCGSGC--C------------VPV
       ::: :::       ::::::::::::.::::::: :::::::  :            :::
CCDS31 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KE0 CCCKPVCCCVPACSCSSCGSCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSS
       :::::::  ::::::.:::::::::: :::::: ::::::::::::::::          
CCDS31 CCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGS----------
               70        80        90       100       110          

     100       110       120       130       140       150         
pF1KE0 SCGSCGGSKGVCGFRGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSS
                               ::::: :: ::::::::::::::::::::: : :::
CCDS31 ------------------------CGCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCCQSS
                                      120       130       140      

     160       170       180       190       200       210         
pF1KE0 CCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCC
       :: : : ::::::::::         ::.:: : : :   ::                  
CCDS31 CCVPVCCQSSCCKPCCC---------QSNCCVPVCCQ---CKI                 
        150       160                170                           

     220       230        
pF1KE0 KPCSSQSSCCVPICCQCKI

>>CCDS31332.1 6 gene_id:440023|Hs108|chr11                (129 aa)
 initn: 1303 init1: 628 opt: 754  Z-score: 440.2  bits: 87.9 E(32554): 3.4e-18
Smith-Waterman score: 892; 65.7% identity (69.2% similar) in 172 aa overlap (1-172:1-128)

               10        20        30        40        50        60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
       ::: ::::::::.::::::.:::::       :.::::.:::::::::::::::.:::::
CCDS31 MGCCGCSGGCGSGCGGCGSGCGGCG-------SSCCVPICCCKPVCCCVPACSCTSCGSC
               10        20               30        40        50   

               70        80        90       100       110       120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
       ::::: :::::: ::::::::::::::::                               
CCDS31 GGSKGCCGSCGGSKGGCGSCGGSKGGCGS-------------------------------
            60        70        80                                 

              130       140       150       160       170       180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
          :::::::: ::: ::::::::::::::::: :::.::: : : :   ::        
CCDS31 ---CGCSQCSCCKPCYCSSGCGSSCCQSSCCKPCCSQASCCVPICCQ---CKI       
                90       100       110       120                   

              190       200       210       220       230        
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI




238 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:07:10 2016 done: Wed Nov  2 23:07:10 2016
 Total Scan time:  1.960 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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