GENSCAN 1.0	Date run:  4-Nov-116	Time: 21:59:55

Sequence gi568815582f:55225092_55429311 : 204220 bp : 42.60% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  10764  10782   19  2  1   73   94    30 0.268   2.51
 1.02 Term +  17563  17786  224  2  2   39   53   188 0.398   6.50
 1.03 PlyA +  19159  19164    6                               1.05

 2.00 Prom +  22885  22924   40                              -6.05
 2.01 Init +  25878  25985  108  2  0  100   89    43 0.461   5.87
 2.02 Intr +  38250  38394  145  2  1   53   41   158 0.786   6.53
 2.03 Term +  42942  43066  125  1  2   70   39    88 0.404  -0.33
 2.04 PlyA +  44674  44679    6                               1.05

 3.04 PlyA -  46312  46307    6                               1.05
 3.03 Term -  46576  46500   77  2  2  116   38    70 0.770   1.82
 3.02 Intr -  49038  48787  252  1  0   28   53   162 0.323   3.18
 3.01 Init -  57162  56949  214  0  1   61   35   220 0.529  12.95
 3.00 Prom -  66743  66704   40                              -5.95

 4.00 Prom +  66867  66906   40                              -6.15
 4.01 Init +  74103  74277  175  2  1   49   92    83 0.320   4.36
 4.02 Intr +  74741  74830   90  0  0   50   57    80 0.234   0.15
 4.03 Intr +  75665  75837  173  0  2   11   95   134 0.410   5.14
 4.04 Intr +  90348  90426   79  2  1  111   89    24 0.023   3.01
 4.05 Intr +  98597  98870  274  0  1   40   48   338 0.138  20.67
 4.06 Intr +  99188  99323  136  2  1   92   83   -27 0.561  -3.15
 4.07 Intr + 101245 101502  258  0  0  104  105   217 0.996  21.74
 4.08 Intr + 102205 102314  110  0  2  131  103   119 0.999  15.86
 4.09 Intr + 102495 102802  308  0  2   93   79   297 0.874  24.47
 4.10 Intr + 103609 104320  712  2  1   92   18   757 0.180  58.67
 4.11 Intr + 104590 104703  114  1  0   84   86   110 0.424   9.04
 4.12 Intr + 104848 104914   67  1  1   20    4    56 0.214 -11.61
 4.13 Intr + 105210 105386  177  2  0   91   40   231 0.672  17.79
 4.14 Intr + 105690 105971  282  2  0   26   81   173 0.951   7.09
 4.15 Intr + 106286 106737  452  1  2    5   66   276 0.889   8.27
 4.16 Term + 106921 107017   97  1  1   72   42   132 0.914   3.46
 4.17 PlyA + 107025 107030    6                               1.05

 5.00 Prom + 110108 110147   40                              -5.75
 5.01 Init + 116421 116483   63  2  0   82  116    -7 0.131   2.70
 5.02 Intr + 122261 122371  111  1  0   60   62    94 0.001   3.66
 5.03 Intr + 132757 132840   84  0  0  105   45    89 0.073   5.40
 5.04 Intr + 135240 135365  126  2  0   75   33    88 0.013   1.96
 5.05 Intr + 145183 145233   51  0  0   74   61    84 0.005   2.49
 5.06 Intr + 149702 149941  240  1  0   65   11   162 0.043   3.02
 5.07 Intr + 154780 155025  246  0  0  106   -6   164 0.587   5.53
 5.08 Intr + 155047 155201  155  0  2   90   40   162 0.078   9.55
 5.09 Intr + 159916 160045  130  1  1   61  100    12 0.031  -0.52
 5.10 Term + 170262 170327   66  2  0  122   38   124 0.886   7.76
 5.11 PlyA + 172128 172133    6                               1.05

 6.06 PlyA - 172227 172222    6                               1.05
 6.05 Term - 176796 176716   81  0  0   88   42   104 0.224   2.51
 6.04 Intr - 186469 186260  210  1  0  109   76    29 0.074   1.99
 6.03 Intr - 187251 187014  238  2  1   82   31   113 0.056   1.69
 6.02 Intr - 193777 193692   86  1  2   46  116    56 0.443   1.90
 6.01 Init - 194948 194619  330  2  0   53   38   176 0.252   6.46
 6.00 Prom - 195095 195056   40                              -4.55

 7.03 PlyA - 197344 197339    6                               1.05
 7.02 Term - 201879 201723  157  2  1  113   42   149 0.896   9.22
 7.01 Init - 202462 202410   53  1  2   62   78    38 0.527   0.88

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  39145  39273  129  2  0  106   61    84 0.812   7.25
S.002 Term +  77917  78054  138  0  0   87   48   115 0.915   4.38
S.003 Init - 122643 122542  102  0  0   56   81   132 0.803   9.59
S.004 Term + 132757 132903  147  0  0  105   49   114 0.836   6.12
S.005 Init + 151134 151286  153  2  0   83   68    85 0.909   6.03


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582f:55225092_55429311|GENSCAN_predicted_peptide_1|80_aa
MVKYKEARQGPGIQKALCSWDKAKGLIELINTSHLQMAKLKEHTVTHAHWGFRSCKHSTL
DIAMGSEPDDLPVCMLPLGV

>gi568815582f:55225092_55429311|GENSCAN_predicted_CDS_1|243_bp
atggtgaagtacaaggaagcaaggcaaggacctgggatacagaaagccctctgttcttgg
gataaggcaaagggtctaattgagctgattaacacaagccacttgcagatggcaaaactg
aaagagcacactgtaacacatgcccactggggcttcaggagctgtaaacactcaacccta
gacattgccatgggatcggagcccgatgacctgcctgtctgcatgctccccctaggggtt
tga

>gi568815582f:55225092_55429311|GENSCAN_predicted_peptide_2|125_aa
MPCLNILNQGYDFSCLTTHGTKFLVVEVDDTKQLVRDGTPGLEDERAESGFWKPKRSCWR
ARLRTHGQLVSKRQGPLPLLVVPGCPLEGYVPQVPHSGICTAGASGALQTVWQGKEAKTK
LHIGS

>gi568815582f:55225092_55429311|GENSCAN_predicted_CDS_2|378_bp
atgccctgcttgaacatcttgaaccagggatatgattttagttgcctaactacacatgga
actaaattcctagtggttgaagttgatgatacaaagcagctggttagagatgggacccca
gggctggaagatgaaagagctgagtccggcttctggaagcccaaaagatcctgctggcgt
gcccggctgaggactcatgggcagctggtatccaagcgacaagggccactaccacttctg
gtggtccctgggtgtccgctggagggttatgtccctcaagttcctcattcagggatttgc
acagctggagcttctggagcattacaaactgtgtggcaggggaaagaagcaaagactaaa
ttgcacattggctcttaa

>gi568815582f:55225092_55429311|GENSCAN_predicted_peptide_3|180_aa
MEVLDKVKNNKWTLSGGPTLIDENSYLGHCVEKDSQVGPRTRREEYHSQLIAQAQEGREG
TCTPIAAIAMPAAKLPREQICIEPQRGLQLQARVSGSDGELGRNPIQKLISLNCCITEIK
RQICKFQVTTTHKKDKGFPWKEANAEMKRGKRIIKALDDHDLLTISMVLPSLECRIVVII

>gi568815582f:55225092_55429311|GENSCAN_predicted_CDS_3|543_bp
atggaggtgttagataaggtcaagaataacaagtggactttgtctggagggccaacactg
atagatgaaaacagctatttagggcactgtgttgagaaggattctcaggttgggccacgg
actcgcagggaagagtaccacagccaattaatagcacaggcccaggaagggagagaagga
acctgcacaccaatagctgccatagcaatgccagcagcgaagttgccacgtgaacagatc
tgtattgaaccccagagagggcttcagctgcaagctcgagtgtcagggtcagatggagag
ctgggaaggaatcctatccagaagctaattagtttaaactgctgcatcacagaaattaaa
aggcaaatttgcaaatttcaagtaaccactacccacaaaaaagacaaaggtttcccctgg
aaagaggccaatgctgaaatgaagagaggcaaaagaataataaaggccctcgatgaccat
gatcttcttaccatctccatggttttgccttctctggaatgtcgcatagttgtaatcata
tag

>gi568815582f:55225092_55429311|GENSCAN_predicted_peptide_4|1167_aa
MPSAWRKDSPGVRSSVCLFYGGWGRWLIPCWLLSSLTLLQPLVTSLLPHTNTFVIERLVS
GADKLRSGRRDSVRTGMSLLEWVEELMGGWLCYLMMRKSPPPSVKLIARKELSPLLRDIA
LTLPMRGHLSFRLTVYIPFRKSRVVANVSSVRMGTLFCSQPYPSTLKPYQVQTPPPAERR
GCSPDREPSSGSLAAPRPLREARARGSQALPSEEMPRDLSKQPAAARDRTWRVSRRNLRD
PEPRPRGGAIRPTRGPGSCREAPRLLSPLSPPPSPSCLSPPLFSCLFFCILSSLAAPVAS
RLLRAAGEEFLASASSSTTCCESTQRSVSDVASGSTPAPALCCAPYDSRLLGSARPELGA
ALGIYGAPYAAAAAAQSYPGYLPYSPEPPSLYGALNPQYEFKEAAGSFTSSLAQPGAYYP
YERTLGQYQYERYGAVELSGAGRRKNATRETTSTLKAWLNEHRKNPYPTKGEKIMLAIIT
KMTLTQVSTWFANARRRLKKENKMTWAPKNKGGEERKAEGGEEDSLGCLTADTKEVTASQ
EARGLRLSDLEDLEEEEEEEEEAEDEEVVATAGDRLTEFRKGAQSLPGPCAAAREGRLER
RECGLAAPRFSFNDPSGSEEADFLSAETGSPRLTMHYPCLEKPRIWSLAHTATASAVEGA
PPARPRPRSPECRMIPGQPPASARRLSVPRDSACDESSCIPKAFGNPKFALQGLPLNCAP
CPRRSEPVVQCQYPSGAEGSGPPAALGVSMQKTPTYRPARQLHTLCHSSLPRGDSLVPAV
LLREFTRVGQAPGLLEKSKTVGQTHTTDLRQASDCQSVSPDAGWFFHCVKDLVSAMAAIC
ERILEMGPTFRIHLQVKKLPDLARDQELSLCLRDRHTETLLAAVLARRAGVRCLRGRCAG
KDALRPGILATARRGLHTSVPLVAGKETDKVTDKAVAPAAQRTNRCVTNPWSQADHLAGP
AHGKWWDLSGCLSGNCICFRVRIWVPGSERTAARREAGTRGSALEGSSEEQMRREGRTKG
SWGVRPRPGFLGSCVSNAGSRPGQAFQASAEARLSVTEIQASIVRLLGRMIENLWRTMRG
NVEVGSAREAEAARHLLAPLYGKDSFAVGRDFRDHDLQKLQTSSSDEKVKPKREGRDPPV
ALADPRLRVRKIKLRKDKHYFQSALRD

>gi568815582f:55225092_55429311|GENSCAN_predicted_CDS_4|3504_bp
atgccatctgcatggaggaaagattcgccaggtgtaagaagctctgtgtgcctattttat
ggagggtggggccggtggttaataccctgctggctcctgtcttccctgactcttctgcag
cctctggtgacttccctgctccctcataccaacacattcgtgattgagagattggtgtct
ggtgctgataaacttaggtcagggagacgggactctgtaagaactgggatgtccctgctg
gagtgggtggaagagctgatgggaggatggctctgttacctgatgatgagaaaatctccc
cctccaagtgtgaaactcatcgcaaggaaagaactttctcctcttttgcgggacattgcc
ctgacactgcctatgaggggacatctttctttccgccttactgtttatattcccttcaga
aaatccagagttgttgcgaatgtcagctctgtgcggatggggactttgttttgttctcag
ccatatcccagcaccttaaaaccctaccaggtacagacgccacccccagcggagcgcagg
ggctgcagcccggaccgggagccttcttcaggctccctggctgccccgcggccactgcgg
gaggcgcgcgcgcgaggcagccaagccttgccttcggaggagatgcccagggatcttagc
aagcagcctgcggctgccagggatcggacctggcgagtttcccgacggaatctgagggat
cccgaacctcggcctcgagggggcgctatccggcctactcgaggaccaggcagctgcaga
gaagctccaagactcctgtctcccctctcccctcctccttctccctcttgcctttctccc
ccacttttctcctgtctcttcttttgtattctctcctccctcgccgccccggttgcctct
cgcctcctccgggccgcaggggaggagtttctggcgtcggcaagttccagcaccacatgc
tgcgaatctacccaacgctctgtctcagatgtggcatcaggctccaccccagcgcccgct
ctctgctgcgcaccctacgatagtcgactgctgggcagtgcgcgaccggagctgggcgcc
gccttgggcatctatggagcaccctatgcggccgctgcagctgcccagagctaccctggc
tacctgccctatagcccagagcccccctcactgtatggggcactgaatccacagtatgaa
tttaaggaggctgcagggagttttacatccagcctggcacaaccaggagcctattatccc
tatgagcggactctggggcagtaccaatatgaacggtatggcgcagtggaattgagtggc
gccggtcgccgaaagaacgcgacccgggagaccaccagtacactcaaggcctggctcaac
gagcaccgcaaaaacccctaccccactaagggtgagaagatcatgctggccatcatcacc
aagatgaccctcacccaggtgtccacctggttcgccaacgcacgccggcgcctcaagaaa
gagaacaaaatgacatgggcgcccaagaacaaaggtggggaggagaggaaggcagaggga
ggagaggaggactcactaggctgcctaactgctgacaccaaagaagttactgctagccag
gaggcccgggggctccggctgagtgacctggaagacctggaggaagaggaggaggaggag
gaggaagctgaagacgaggaggtagtggccacagctggggacaggctgacggagttccga
aagggcgcgcagtcactgcctgggccgtgcgctgcagctcgagagggccgattggagcgc
agggagtgcggcctggctgcgccccgcttctccttcaatgacccttccggatcggaagaa
gctgacttcctctcggcggagacaggcagccctaggttgaccatgcactacccatgcttg
gagaaaccgcgcatctggtctctggcgcacaccgcgacagccagcgctgttgaaggtgca
cccccagcccggcctaggccacgaagtcctgagtgccgtatgattcctggacagcctcct
gcctctgcccggcgactctcagtccccagagactccgcgtgcgacgagtcttcctgcata
cccaaagcctttggaaaccccaagtttgccctgcagggactaccgctgaactgtgcgccg
tgcccgcggaggagcgagcctgtagtgcagtgccagtacccgtctggagcagaaggtagt
gggcccccagcggcgctgggagtatctatgcaaaagacacccacctaccgccccgcccgg
caattgcacaccctctgccattccagtctgcccagaggagactcgctggtccctgctgtg
ctgctcagagagtttactagggttgggcaggcaccagggcttttagagaagtctaagact
gtgggccagacgcacaccacagatttaaggcaggccagtgactgccaatcagtgtcccct
gatgctggctggttctttcactgtgttaaggacctggttagcgcaatggctgcgatttgc
gaaagaatcttggaaatgggccccacgtttcgaattcatctccaggttaagaagctgcca
gaccttgccagggaccaggagctctcactttgcctaagagacagacacacagaaaccctc
ctagcagctgtccttgcacgcagagctggggtgaggtgcttgagaggtcggtgtgcaggc
aaagatgcattgcggccagggattcttgcgacagcgcggcgtgggctgcatacctcagtt
cctttagtagctgggaaagaaactgacaaggtaacagacaaggccgtggcgcctgcagct
cagcggactaaccgctgcgtaaccaatccgtggagccaagctgaccacctcgcgggtcct
gcgcatgggaagtggtgggacttgtcaggatgtttatctggaaactgcatctgtttccgg
gttcgtatttgggttccagggagtgagcgcaccgctgctcgcagggaagcagggacccgg
ggcagtgccctagaggggagctccgaagagcaaatgaggcgggaaggcaggacgaaaggc
agctggggtgtgcgcccaaggcctggattcctggggagctgcgtttccaacgccgggtcc
cggccaggccaggccttccaggccagcgcggaggccagactatcagtcactgaaatccag
gcgagcatagtccgcctcctgggcaggatgattgaaaacctttggaggacgatgagggga
aatgtggaggttggaagtgctagggaagccgaagcagcgcgccacctcctagctcctctc
tatggaaaagacagctttgctgtcggaagggactttagagatcatgacttacaaaaactg
caaacctcctcttcagatgagaaggttaagcccaaacgggagggcagggaccctccagtc
gccctcgctgacccgcggcttagggtccggaaaattaaactgcgaaaagataaacattat
ttccagtcggctttgcgggattaa

>gi568815582f:55225092_55429311|GENSCAN_predicted_peptide_5|423_aa
MHRRVDFKVFCQNENSGYLWKGRSGRRAEHWMLAQVHTSFRLLEKGFMKGGNAEKVTVGH
PPSSKLPSDASLNQVRRPLLKSPESMWNSLEGSSLDPQLLCQLPGTEKKLKEHVLNIFSE
NRMSTDELLYSDLGAYGPNTGAVLKDKEGKKKLAQNTHHLNPLNIEGGLEGKQTSLPLSF
LVLRYRSHITRPFQWDTLGSGVSGHRLQEERGPWLDTTLSLLICKAQGGLLKPLGSVIAP
LPFIQPLERAPECPVIKIAFRLESIIADTHYCFPGGHQSRQILYKPRTANLAVYDGSLCV
ACGLPGEDSGPNTCHASNSLNPSPSALPDPGEKQQLLTAGTARPILPCPSPGFRAQRLRR
DFVPKLIVSRLCELAWGCFYRGLLGGVTVKLLPKENDNAYLKPTQCEEDENEDLYDDPLS
LNE

>gi568815582f:55225092_55429311|GENSCAN_predicted_CDS_5|1272_bp
atgcataggagagtggatttcaaagtcttttgccaaaatgaaaacagtggttatctctgg
aagggcaggagtgggagacgtgctgagcactggatgttggcacaagtccacacctctttc
cgactgctggagaaaggcttcatgaaagggggcaatgcagaaaaagtaactgttggccac
ccaccgtccagcaaactgcccagtgatgccagcctcaaccaagtcagaaggccacttctg
aaatcccctgagagcatgtggaattctctggagggctcatcacttgatccccaactcctg
tgccaattgcctggcacagaaaagaagctcaaagaacatgtgttaaatatcttctcagaa
aaccgtatgagcactgatgaactgctgtattctgacttgggggcttatggacccaacacc
ggagctgtgttgaaagataaagaagggaagaaaaaattggcccagaacacacaccatttg
aaccccttaaatattgaaggaggactggaaggcaagcagacatctcttccactctctttc
ctggtcctgcgctacaggtcacacataacaaggccctttcagtgggacacactgggctct
ggggtatcagggcatcgtctacaagaagagcgagggccttggttggacacaacccttagt
ttactcatctgtaaagcccaaggaggcctcctgaagcctcttggctctgttattgcccct
ctccctttcatacaacccttggagcgagcacctgagtgccctgtgataaagatagcattt
cgacttgaaagcataattgctgacacacattactgtttccccggaggacatcagtccaga
caaatcctctacaaacctaggacagcaaacttggcagtttatgatggaagcctgtgtgta
gcttgtggtctccctggtgaagactcgggtccaaacacctgccacgccagcaacagcctc
aacccttccccctctgctctccctgacccaggtgaaaagcagcagctgctgactgctggc
actgcccgtcccatcctgccatgcccatcaccaggattcagagctcaaaggcttaggaga
gattttgttcccaagctcattgttagtcgtctctgtgaactggcatgggggtgtttttat
agaggactcttgggtggggtgactgtgaagttgttgccaaaggaaaatgacaatgcttat
ctgaagcctactcagtgtgaagaagatgagaatgaagatctttatgatgatccactttca
cttaatgaataa

>gi568815582f:55225092_55429311|GENSCAN_predicted_peptide_6|314_aa
MMDLCREIREDLTGKNDMNRVLKEGRESVMWMDIWKKRIPGTRSSKCKGPEAGTYLACCR
RARTPVKPESSVLEREVDQTPEKGGLGEGVYTMSGLSGHCKVFLYKKAGKKKGDQDIGRR
VEALTVPIAVICQNRAPGRLWEENPSSSIPASGGPGVPRLATASLQPLPLSFHGLLVCGS
RYTFSLGPPEIQDDCILKSLTAYICKDSLSKYGHLSEVCSSSSSSWATLPCFKVFWNFVQ
TCCAEDPLPVLPLQEREEAATYTLHFPELRQLASSCIQPRGSTAGTWRQQAEWKYRLNGA
EEQMEILALVGESD

>gi568815582f:55225092_55429311|GENSCAN_predicted_CDS_6|945_bp
atgatggatttatgtagggagatcagagaagacctcactgggaagaatgatatgaacaga
gtcctgaaggaggggagagagtcagtcatgtggatggatatttggaagaagagaattcct
ggcaccagaagcagcaagtgcaagggccctgaggctggaacatatttggcctgctgcaga
agagcgagaacaccagtgaagccagagtcaagtgtgctagagagagaagtcgatcagacg
ccagagaaagggggacttggggaaggggtgtataccatgtcgggcctttcaggtcattgt
aaagtcttcctgtacaagaaagctgggaagaagaagggtgaccaggatattggcaggagg
gttgaagccttgacagttcccattgctgtgatctgccagaacagggctcctggaaggctt
tgggaggagaatccttcctcatctattccggcttctggtggccctggtgttcctcggctt
gcaacagcatcactccaacctctgcctctgtctttccatggccttcttgtctgtggttct
cgctatacattttctttaggcccacctgaaatccaggatgactgcatcttgaagtcctta
actgcttacatctgcaaagactctttgtctaaatatgggcacctttctgaagtttgctct
tcttcctcctcttcttgggctactctcccatgcttcaaggttttctggaattttgttcag
acctgttgtgctgaggatccacttcccgtccttcccctgcaggagagggaggaggctgca
acctacacactacatttcccagagctgcgtcagctggcctccagctgcattcaaccaagg
ggaagcactgctgggacctggaggcaacaggcagaatggaaatatcgtcttaatggtgca
gaagagcaaatggagattttggctctagtgggggaatcagattaa

>gi568815582f:55225092_55429311|GENSCAN_predicted_peptide_7|69_aa
MERPTRQRTEASSNNPVRLELPIKAGTPAATLRNAVMMLSGKAEGTGSLHLRIAAPNLGH
QPEDPAREK

>gi568815582f:55225092_55429311|GENSCAN_predicted_CDS_7|210_bp
atggagaggcccacaagacaacgaactgaagcctccagcaacaaccctgtgaggctggaa
ctgcccataaaggctggcaccccagcagccaccttgagaaatgcagtgatgatgctgagt
ggcaaggcagaaggcacagggtccctgcacctgaggattgctgctccaaacctgggccac
cagcctgaagatcccgccagggagaaataa