Result of FASTA (ccds) for pF1KF0190
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KF0190, 520 aa
  1>>>pF1KF0190     520 - 520 aa - 520 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6860+/-0.00068; mu= 8.3534+/- 0.041
 mean_var=142.2001+/-28.579, 0's: 0 Z-trim(115.5): 15  B-trim: 182 in 1/52
 Lambda= 0.107553
 statistics sampled from 16310 (16322) to 16310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.488), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(33420)
CCDS248.1 IFNLR1 gene_id:163702|Hs109|chr1         ( 520) 3631 574.6 9.9e-164
CCDS249.1 IFNLR1 gene_id:163702|Hs109|chr1         ( 491) 1872 301.6 1.4e-81
CCDS250.1 IFNLR1 gene_id:163702|Hs109|chr1         ( 244) 1555 252.3 4.9e-67


>>CCDS248.1 IFNLR1 gene_id:163702|Hs109|chr1              (520 aa)
 initn: 3631 init1: 3631 opt: 3631  Z-score: 3053.2  bits: 574.6 E(33420): 9.9e-164
Smith-Waterman score: 3631; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KF0 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KF0 VIAAGGVIWKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 VIAAGGVIWKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELTR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KF0 GVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KF0 EAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KF0 HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSP
              430       440       450       460       470       480

              490       500       510       520
pF1KF0 EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHYMAR
       ::::::::::::::::::::::::::::::::::::::::
CCDS24 EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHYMAR
              490       500       510       520

>>CCDS249.1 IFNLR1 gene_id:163702|Hs109|chr1              (491 aa)
 initn: 1904 init1: 1856 opt: 1872  Z-score: 1578.5  bits: 301.6 E(33420): 1.4e-81
Smith-Waterman score: 3352; 94.4% identity (94.4% similar) in 520 aa overlap (1-520:1-491)

               10        20        30        40        50        60
pF1KF0 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KF0 VIAAGGVIWKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELTR
       :::::::::::::::::::::::::::                             ::::
CCDS24 VIAAGGVIWKTLMGNPWFQRAKMPRAL-----------------------------ELTR
              250       260                                    270 

              310       320       330       340       350       360
pF1KF0 GVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHS
             280       290       300       310       320       330 

              370       380       390       400       410       420
pF1KF0 EAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG
             340       350       360       370       380       390 

              430       440       450       460       470       480
pF1KF0 HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSP
             400       410       420       430       440       450 

              490       500       510       520
pF1KF0 EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHYMAR
       ::::::::::::::::::::::::::::::::::::::::
CCDS24 EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHYMAR
             460       470       480       490 

>>CCDS250.1 IFNLR1 gene_id:163702|Hs109|chr1              (244 aa)
 initn: 1549 init1: 1549 opt: 1555  Z-score: 1317.2  bits: 252.3 E(33420): 4.9e-67
Smith-Waterman score: 1555; 98.7% identity (98.7% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KF0 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
       :::::::::::::::::::::::::::::::::::::::::::   :             
CCDS25 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPGLFWTHTPCGNLSAQQT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KF0 VIAAGGVIWKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELTR
                                                                   
CCDS25 RVRE                                                        
                                                                   




520 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Jul 18 21:05:58 2019 done: Thu Jul 18 21:05:59 2019
 Total Scan time:  1.810 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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