Result of FASTA (ccds) for pF1KB6480
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6480, 337 aa
  1>>>pF1KB6480 337 - 337 aa - 337 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2433+/-0.000696; mu= 17.0593+/- 0.042
 mean_var=68.1244+/-13.493, 0's: 0 Z-trim(110.0): 24  B-trim: 5 in 1/50
 Lambda= 0.155390
 statistics sampled from 11245 (11265) to 11245 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.346), width:  16
 Scan time:  2.820

The best scores are:                                      opt bits E(32554)
CCDS33544.1 IFNGR2 gene_id:3460|Hs108|chr21        ( 337) 2277 518.9 2.2e-147
CCDS82660.1 IFNGR2 gene_id:3460|Hs108|chr21        ( 356) 2130 486.0 1.9e-137
CCDS13623.1 IL10RB gene_id:3588|Hs108|chr21        ( 325)  306 77.1 2.2e-14


>>CCDS33544.1 IFNGR2 gene_id:3460|Hs108|chr21             (337 aa)
 initn: 2277 init1: 2277 opt: 2277  Z-score: 2759.4  bits: 518.9 E(32554): 2.2e-147
Smith-Waterman score: 2277; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)

               10        20        30        40        50        60
pF1KB6 MRPTLLWSLLLLLGVFAAAAAAPPDPLSQLPAPQHPKIRLYNAEQVLSWEPVALSNSTRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MRPTLLWSLLLLLGVFAAAAAAPPDPLSQLPAPQHPKIRLYNAEQVLSWEPVALSNSTRP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFNVTLRLRAELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFNVTLRLRAELG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSSPFDIADTSTAFFCYYVHYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSSPFDIADTSTAFFCYYVHYW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYETMAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYETMAD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPLQIEEYLKDPTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPLQIEEYLKDPTQ
              250       260       270       280       290       300

              310       320       330       
pF1KB6 PILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL
       :::::::::::::::::::::::::::::::::::::
CCDS33 PILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL
              310       320       330       

>>CCDS82660.1 IFNGR2 gene_id:3460|Hs108|chr21             (356 aa)
 initn: 2130 init1: 2130 opt: 2130  Z-score: 2580.9  bits: 486.0 E(32554): 1.9e-137
Smith-Waterman score: 2229; 94.7% identity (94.7% similar) in 356 aa overlap (1-337:1-356)

               10        20                           30        40 
pF1KB6 MRPTLLWSLLLLLGVFAAAAAAPP-------------------DPLSQLPAPQHPKIRLY
       ::::::::::::::::::::::::                   :::::::::::::::::
CCDS82 MRPTLLWSLLLLLGVFAAAAAAPPAQLTLETYQEWCNDSAATHDPLSQLPAPQHPKIRLY
               10        20        30        40        50        60

              50        60        70        80        90       100 
pF1KB6 NAEQVLSWEPVALSNSTRPVVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NAEQVLSWEPVALSNSTRPVVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASP
               70        80        90       100       110       120

             110       120       130       140       150       160 
pF1KB6 SAGFPMDFNVTLRLRAELGALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SAGFPMDFNVTLRLRAELGALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSS
              130       140       150       160       170       180

             170       180       190       200       210       220 
pF1KB6 PFDIADTSTAFFCYYVHYWEKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PFDIADTSTAFFCYYVHYWEKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKS
              190       200       210       220       230       240

             230       240       250       260       270       280 
pF1KB6 NIFRVGHLSNISCYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NIFRVGHLSNISCYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWF
              250       260       270       280       290       300

             290       300       310       320       330       
pF1KB6 HTPPSIPLQIEEYLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HTPPSIPLQIEEYLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL
              310       320       330       340       350      

>>CCDS13623.1 IL10RB gene_id:3588|Hs108|chr21             (325 aa)
 initn: 158 init1:  73 opt: 306  Z-score: 371.6  bits: 77.1 E(32554): 2.2e-14
Smith-Waterman score: 335; 25.7% identity (56.0% similar) in 327 aa overlap (5-324:1-299)

               10        20        30        40        50        60
pF1KB6 MRPTLLWSLLLLLGVFAAAAAAPPDPLSQLPAPQHPKIRLYNAEQVLSWEPVALSNSTRP
           . :::   ::    ..:     :...: :.. ..   : ...:.::  :.....  
CCDS13     MAWSLGSWLGGCLLVSA-----LGMVPPPENVRMNSVNFKNILQWESPAFAKGN--
                   10             20        30        40           

               70        80        90       100       110       120
pF1KB6 VVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFNVTLRLRAELG
       ... .:  : . . :         .: . : :::::.. :  .        :::.:::..
CCDS13 LTFTAQ--YLSYRIFQD-------KCMNTTLTECDFSSLSKYGDH------TLRVRAEFA
      50          60               70        80              90    

              130       140       150       160            170     
pF1KB6 ALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSSP-----FDIADTSTAF--F
         :: ::..  :    .. .::: ...:     :: .:: .:     ..    ....  .
CCDS13 DEHSDWVNIT-FCPVDDTIIGPP-GMQVEVLADSLHMRFLAPKIENEYETWTMKNVYNSW
          100        110        120       130       140       150  

           180       190       200       210       220       230   
pF1KB6 CYYVHYWEKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKSNIFRVGHLSNIS
        : :.::..:  .. .   . .   : ::.:  .::.::.. .: ...   ..:. :.  
CCDS13 TYNVQYWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRG-FLPDRN---KAGEWSEPV
            160       170       180       190           200        

           240       250       260       270       280       290   
pF1KB6 CYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPLQIEE
       : .:  : ..   .: .: ...  .. .   .:: :.       :: :    :.: ...:
CCDS13 CEQTTHDETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE
      210       220       230       240       250       260        

           300       310       320       330                    
pF1KB6 YLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL             
       .:  : .  :  ..   : ..::.:..:.:.                          
CCDS13 FLGHPHHNTLLFFSFPLSDENDVFDKLSVIAEDSESGKQNPGDSCSLGTPPGQGPQS
      270       280       290       300       310       320     




337 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:15:27 2016 done: Sat Nov  5 01:15:28 2016
 Total Scan time:  2.820 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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