GENSCAN 1.0	Date run:  5-Nov-116	Time: 01:15:49

Sequence gi568815577f:33303544_33536959 : 233416 bp : 43.90% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  21513  21588   76  2  1   49   94   190 0.501  14.95
 1.02 Intr +  21679  21905  227  2  2  -12   30   182 0.671   0.10
 1.03 Intr +  31175  31390  216  1  0   61   33   153 0.348   5.80
 1.04 Intr +  34453  34538   86  0  2   24  102    56 0.368  -0.78
 1.05 Intr +  37456  37631  176  1  2   85  116    29 0.761   4.98
 1.06 Intr +  39725  39879  155  0  2   81   74    42 0.417   1.89
 1.07 Term +  51773  52006  234  1  0   54   47   176 0.684   6.42
 1.08 PlyA +  56250  56255    6                               1.05

 2.04 PlyA -  57325  57320    6                               1.05
 2.03 Term -  65326  65179  148  0  1   68   53   134 0.603   5.27
 2.02 Intr -  79842  79629  214  1  1   70   69   130 0.243   7.07
 2.01 Init -  82427  82382   46  2  1   86   58    48 0.623   0.45
 2.00 Prom -  96713  96674   40                              -1.96

 3.00 Prom +  98797  98836   40                              -4.16
 3.01 Init + 100001 100073   73  1  1   78   99   271 0.974  26.43
 3.02 Intr + 104383 104465   83  2  2    8   59    68 0.013  -4.74
 3.03 Intr + 107902 108028  127  0  1   41   76   106 0.301   4.95
 3.04 Intr + 111345 111477  133  1  1  103   66    97 0.981   8.70
 3.05 Intr + 117937 118142  206  1  2   99   95   125 0.939  13.14
 3.06 Intr + 129171 129328  158  1  2   78   94    97 0.589   9.03
 3.07 Term + 133285 133419  135  0  0   27   46   116 0.126  -0.68
 3.08 PlyA + 133653 133658    6                              -1.75

 4.08 PlyA - 133734 133729    6                              -0.45
 4.07 Term - 133823 133757   67  1  1   62   42    73 0.302  -2.49
 4.06 Intr - 135754 135671   84  0  0   95  115   101 0.360  12.44
 4.05 Intr - 156605 156536   70  0  1   92   43    11 0.023  -4.76
 4.04 Intr - 156962 156870   93  0  0   85  106     4 0.455   1.84
 4.03 Intr - 161866 161799   68  0  2   93  103    38 0.691   4.35
 4.02 Intr - 163569 163467  103  1  1   66  103    12 0.559  -0.27
 4.01 Init - 165342 165252   91  0  1   76   76    42 0.583   2.45
 4.00 Prom - 166164 166125   40                              -3.16

 5.00 Prom + 167670 167709   40                              -3.76
 5.01 Init + 175276 175342   67  0  1   63   91    60 0.425   5.03
 5.02 Term + 176339 176439  101  0  2   35   54    81 0.275  -2.31
 5.03 PlyA + 177701 177706    6                               1.05

 6.02 PlyA - 178018 178013    6                               1.05
 6.01 Sngl - 178570 178037  534  1  0   43   34   793 0.988  65.47
 6.00 Prom - 178741 178702   40                              -3.66

 7.02 PlyA - 178978 178973    6                               1.05
 7.01 Sngl - 185829 184684 1146  0  0   80   41   559 0.553  46.78
 7.00 Prom - 198486 198447   40                              -3.46

 8.18 PlyA - 199649 199644    6                               1.05
 8.17 Term - 200772 200581  192  0  0   87   48   151 0.998   8.42
 8.16 Intr - 200984 200869  116  0  2  113   68   -16 0.988  -0.93
 8.15 Intr - 202159 202018  142  1  1   95  103    72 0.994   9.33
 8.14 Intr - 202561 202431  131  2  2  126   89    64 0.999  10.71
 8.13 Intr - 207915 207709  207  1  0   69   75   120 0.915   7.85
 8.12 Intr - 213535 213446   90  2  0   75   82    55 0.759   3.57
 8.11 Intr - 214065 213814  252  1  0   91   65   167 0.929  12.11
 8.10 Intr - 217019 216821  199  2  1   55   56    62 0.670  -1.38
 8.09 Intr - 217472 217363  110  0  2   60   84    58 0.697   2.60
 8.08 Intr - 218739 218645   95  2  2   90   82    88 0.992   8.01
 8.07 Intr - 221457 221226  232  1  1   74   98   136 0.994  10.03
 8.06 Intr - 224701 224624   78  2  0   62  109    92 0.782   8.22
 8.05 Intr - 225394 225307   88  1  1   99   96    28 0.938   4.24
 8.04 Intr - 227341 227216  126  1  0   88   80    25 0.855   2.58
 8.03 Intr - 228913 228802  112  0  1   82   96   110 0.972  11.58
 8.02 Intr - 231210 231036  175  1  1   67   92    36 0.943   0.90
 8.01 Intr - 231777 231682   96  1  0  102   63    64 0.958   5.28

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577f:33303544_33536959|GENSCAN_predicted_peptide_1|389_aa
MMVVLLGATTLVLVAVAPWVLSAAADAQSGKPSVHFAAPKIKPDLGSQINQEKVVFWVLS
CRLPVAVYGSSGAPGSHPREMAVPELCVEFDSFRESTAAPLCQVMRRVIQVCEGQLDVQT
EGTGAISGYPTTQFMTQVVIQGDITSYDAVNTEGKAAEIHYTFPPLQWEMGQGKLFAKYA
SNKSLISKELKQSTTKPKSIKRTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIR
AEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTY
SLVIWKNSSGVEYFSEQPLKNLLLSTSEEQIEKCFIIENISTIATVEETNQTDEDHKKYS
SQTSQDSGNYSNEDESESKTSEELQQDFV

>gi568815577f:33303544_33536959|GENSCAN_predicted_CDS_1|1170_bp
atgatggtcgtcctcctgggcgcgacgaccctagtgctcgtcgccgtggcgccatgggtg
ttgtccgcagccgcagacgcccagtctgggaaaccttcggtccactttgccgcgccaaag
attaaacccgacctgggctcgcaaatcaaccaggagaaagtggtgttctgggtcctctct
tgccgcttgcctgtggccgtgtacgggtcctcgggagcgcccgggtcccacccccgtgaa
atggcggtgccagagctttgtgtcgagtttgattctttccgggaaagtaccgcggctccg
ctgtgtcaagtgatgcgcagggtgatccaggtgtgtgaggggcagctggatgtccagact
gagggcactggtgccatcagtggctatcctaccactcaattcatgacccaggtggtgatc
cagggtgatatcaccagttatgatgcagttaacacagaggggaaagctgctgagatacac
tatactttcccacccctgcagtgggagatggggcaggggaaactatttgcaaaatatgca
tccaacaagagcttaatatccaaggaactcaaacaatcaacaacaaaacccaaatccatc
aaaagaactgggatggataattggataaaattgtctgggtgtcagaatattactagtacc
aaatgcaacttttcttcactcaagctgaatgtttatgaagaaattaaattgcgtataaga
gcagaaaaagaaaacacttcttcatggtatgaggttgactcatttacaccatttcgcaaa
gctcagattggtcctccagaagtacatttagaagctgaagataaggcaatagtgatacac
atctctcctggaacaaaagatagtgttatgtgggctttggatggtttaagctttacatat
agcttagttatctggaaaaactcttcaggtgtagaatatttctctgaacagccattgaag
aatcttctgctttcaacttctgaggaacaaatcgaaaaatgtttcataattgaaaatata
agcacaattgctacagtagaagaaactaatcaaactgatgaagatcataaaaaatacagt
tcccaaactagccaagattcaggaaattattctaatgaagatgaaagcgaaagtaaaaca
agtgaagaactacagcaggactttgtatga

>gi568815577f:33303544_33536959|GENSCAN_predicted_peptide_2|135_aa
MGFLHVEAGLELLTSVWVTWRFLWLTASDFSINFVAKAPCTVLCMVRTVWFVSDSGAFPD
AGLSVLKLGKPRVNQDESAALPRALDKPAAGDILTTQPHLHYGLYPVPKLLSKKNEKNED
MLTIRRRRMGREEFC

>gi568815577f:33303544_33536959|GENSCAN_predicted_CDS_2|408_bp
atggggtttctccatgttgaggctggtctcgaactgctgacctcagtctgggtcacgtgg
cgcttcctgtggctcactgcctctgacttttcaatcaactttgtggctaaagcaccatgc
actgtgctttgcatggtccggactgtctggtttgtcagcgactcaggggcttttccagat
gcgggactttcagtgctgaaactgggaaagcccagggtaaaccaggatgagtcagcggcc
ctgcctcgtgctctggataagcctgctgctggagacatcctgaccactcagccccacctg
cattatggcttgtacccagttcccaagctcttgtccaagaagaatgagaagaatgaggat
atgctgacaattcgaaggcggaggatgggcagagaagaattttgttga

>gi568815577f:33303544_33536959|GENSCAN_predicted_peptide_3|304_aa
MRPTLLWSLLLLLGVFAAAAAAPPVFLEENNFLVMAEESENAFLFLICKVMERWEMVNRR
VEGGIMVPKDVHALILRVREPGNVLPDVQKGLRRYPLSQLPAPQHPKIRLYNAEQVLSWE
PVALSNSTRPVVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFN
VTLRLRAELGALHSAWVTMPWFQHYRNASTELQQVILISVGTFSLLSVLAGACFFLVLKY
RGLIKYWFHTPPSIPLQIEEYLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDV
LQTL

>gi568815577f:33303544_33536959|GENSCAN_predicted_CDS_3|915_bp
atgcgaccgacgctgctgtggtcgctgctgctgctgctcggagtcttcgccgccgccgcc
gcggccccgccagtatttcttgaagagaacaatttcctggttatggctgaggaatcagaa
aatgcctttttatttctcatctgcaaggtgatggagagatgggagatggtgaacaggcgt
gtggagggcggaataatggtccccaaagatgtccacgccctcatcctcagagtccgtgaa
cctgggaatgtgctgcctgacgtacaaaagggactccgcagataccctctttcccagctg
cccgctcctcagcacccgaagattcgcctgtacaacgcagagcaggtcctgagttgggag
ccagtggccctgagcaatagcacgaggcctgttgtctaccaagtgcagtttaaatacacc
gacagtaaatggttcacggccgacatcatgtccataggggtgaattgtacacagatcaca
gcaacagagtgtgacttcactgccgccagtccctcagcaggcttcccaatggatttcaat
gtcactctacgccttcgagctgagctgggagcactccattctgcctgggtgacaatgcct
tggtttcaacactatcggaatgcctccactgagcttcagcaagtcatcctgatctccgtg
ggaacattttcgttgctgtcggtgctggcaggagcctgtttcttcctggtcctgaaatat
agaggcctgattaaatactggtttcacactccaccaagcatcccattacagatagaagag
tatttaaaagacccaactcagcccatcttagaggccttggacaaggacagctcaccaaag
gatgacgtctgggactctgtgtccattatctcgtttccggaaaaggagcaagaagatgtt
ctccaaacgctttga

>gi568815577f:33303544_33536959|GENSCAN_predicted_peptide_4|191_aa
MAGFLDNFRWPECECIDWSERRNAVASVVAGWWIMIDAAVVYPKPEQLNHAFHTCGVFST
LAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNS
QDFMLEAHLLGVAVEKVRNQYRCILHSSLATILLPNRRSSSVSDFLNGLRLCDLPKGLRL
ICQSQDDDQVF

>gi568815577f:33303544_33536959|GENSCAN_predicted_CDS_4|576_bp
atggcaggcttcctagataattttcgttggccagaatgtgaatgtattgactggagtgag
agaagaaatgctgtggcatctgttgtcgcaggctggtggataatgattgatgcagctgtg
gtgtatcctaagccagaacagttgaaccatgcctttcacacatgtggtgtattttccaca
ttggctttcttcatgataaatgctgtatccaatgctcaggtgagaggtgatagctatgaa
agcggctgtttaggaagaacaggtgctcgagtttggcttttcattggtttcatgttgatg
tttgggtcacttattgcttccatgtggattctttttggtgcatatgttacccaaaacagc
caggattttatgctagaggcccatttactgggagttgcagtagaaaaagtgagaaaccag
tacagatgtatcctccactcctcgctggccaccatcctgctgcccaacagaagaagctct
tctgtctccgatttcctgaacggtctaaggttgtgtgacctgcccaaggggctccggctc
atttgccaaagtcaagacgacgaccaggtcttctga

>gi568815577f:33303544_33536959|GENSCAN_predicted_peptide_5|55_aa
MMKKCDRPESSEPLKCQGIHSAGRRLLRHNPAGVPRLHLSPGSPELGADARIERR

>gi568815577f:33303544_33536959|GENSCAN_predicted_CDS_5|168_bp
atgatgaaaaagtgtgaccggcctgagagttcagagcctctgaagtgtcaagggatccac
agtgcaggaaggagactgctgcgccacaaccctgccggcgtcccgcggctccacctcagc
cccgggagcccggagctgggagcagacgcgaggatagagcgccggtga

>gi568815577f:33303544_33536959|GENSCAN_predicted_peptide_6|177_aa
MQINGISLQDYTAVKEKYAKYLPHSAGWYAAKCFRKAQCPIVEPLTNSMMMHGCNNSNKL
MIMCIIKHAFDFIHLLTGENPLQVLVNAIINSGPWEDSTCIGRAGTVRQQAVDMSPLHCV
NQVVWLLCTGTREAAFWNIKTIAECLADELINATKASSSSYAINKKDELECGDKSNR

>gi568815577f:33303544_33536959|GENSCAN_predicted_CDS_6|534_bp
atgcagatcaatggcatttccctgcaggattacactgcagtgaaggagaagtatgccaag
tacctgcctcacagtgctgggtggtatgcagccaaatgcttccgcaaagctcagtgcccc
attgtggagcccctcactaactccatgatgatgcacggctgcaacaacagcaacaagctc
atgatcatgtgcatcatcaagcatgccttcgatttcatccacctgctcacaggcgagaac
cctctccaggtcctggtgaacgccatcatcaacagtggtccctgggaggactccacatgc
attgggcgagcagggactgtgagacaacaggctgtggacatgtccccactgcactgtgtg
aatcaggtcgtctggctgctgtgcacaggcactcgtgaggctgccttctggaacatcaag
accattgctgagtgcctggcggatgagctcatcaatgccaccaaggcctcctccagctcc
tatgccatcaacaagaaggatgagctggagtgtggggacaagtccaaccgctga

>gi568815577f:33303544_33536959|GENSCAN_predicted_peptide_7|381_aa
MAQILRSHLIKATVIPNRVKMLPYFGIIRNRMMSTHKSKKKIREYYRLLNVEEGCSADEV
RESFHKLAKQYHPDSGSNTADSATFIRIEKAYRKVLSHVIEQTNASQSKGEEEEDVEKFK
YKTPQHRHYLSFEGIGFGTPTQREKHYRQFRADRAAEQVMEYQKQKLQSQYFPDSVIVKN
IRQSKQQKITQAIERLVEDLIQESMAKGDFDNLSGKGKPLKKFSDCSYIDPMTHNLNRIL
IDNGYQPEWILKQKEISDTIEQLREAILVSRKKLGNPMTPTEKKQWNHVCEQFQENIRKL
NKRINDFNLIVPILTRQKVHFDAQKEIVRAQKIYETLIKTKEVTDRNPNNLDQGEGEKTP
EIKKGFLNWMNLWKFIKIRSF

>gi568815577f:33303544_33536959|GENSCAN_predicted_CDS_7|1146_bp
atggctcagatcttaagatctcacctgataaaggctacagtgattcctaatcgagtgaaa
atgcttccatattttggtatcattagaaatagaatgatgtcaacccataaatccaaaaag
aagatcagagaatattatagactgctgaacgtggaggaaggatgctctgcagatgaagtc
agggaatcttttcataagcttgccaagcaatatcatcctgacagtggctctaatactgct
gattctgcaacatttataaggattgaaaaagcttatagaaaggtgctctcccatgtgata
gaacaaacaaatgccagtcagagtaaaggtgaagaagaagaagatgtagaaaaattcaaa
tataaaacaccccaacaccgacattatttaagttttgaaggtattggttttgggactcca
actcaacgagagaagcattataggcaatttagggcagaccgtgctgctgaacaagtgatg
gaatatcaaaagcagaaactacaaagccagtattttcctgatagtgtaattgttaaaaat
ataagacagagcaaacagcaaaagataacgcaagctatagaacgtttagtggaggacctc
attcaagaatccatggcaaaaggagactttgacaatctcagtgggaaaggaaaacctctg
aaaaagttttctgactgttcttacattgatcccatgactcacaacctgaaccgaatactg
atcgataatggataccaaccagaatggatccttaagcaaaaggaaataagcgatactatt
gagcaactcagagaggcaattttagtgtctaggaaaaaacttgggaatccaatgacacca
actgaaaagaaacagtggaaccatgtttgtgagcagtttcaagaaaacatcagaaaatta
aacaagcgaattaatgattttaatttaattgttcccatcctgaccaggcaaaaagtccat
tttgatgctcagaaagaaattgtcagagcccagaaaatatacgagacccttataaaaaca
aaagaagtcacagatagaaacccaaataaccttgatcaaggagaaggagagaaaacacct
gaaatcaagaaaggttttttaaactggatgaatctgtggaaatttattaaaatacgatca
ttttga

>gi568815577f:33303544_33536959|GENSCAN_predicted_peptide_8|813_aa
XISISDHTALAQFCKEKKIEFVVVGPEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKR
FAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEAC
KAVQEIMQCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIK
DTVLQRTVDGMQQEGTPYTENHTALTVVMASKGYPGDYTKGVEITGFPEAQALGLEVFHA
GTALKNGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGAIYRKDVGFRAIAFLQ
QPRSLTYKESGVDIAAGNMLVKKIQPLAKATSRSGCKVDLGGFAGLFDLKAAGFKDPLLA
SGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVTEA
VVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLERITEGDV
VVGIASSGLHSNGFSLVRKIVAKSSLQYSSPAPDGCGDQTLGHVKAFAHITGGGLLENIP
RVLPEKLGVDLDAQTWRIPRVFSWLQQEGHLSEEEMARTFNCGVGAVLVVSKEQTEQILR
DIQQHKEEAWVIGSVVARAEGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAG
IPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPS
LLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVK
LAEHKIFPAALQLVASGTVQLGENGKICWVKEE

>gi568815577f:33303544_33536959|GENSCAN_predicted_CDS_8|2442_bp
nccatctcaatcagtgaccacactgcccttgctcaattctgcaaagagaagaaaattgaa
tttgtagttgttggaccagaagcacctctggctgctgggattgttgggaacctgaggtct
gcaggagtgcaatgctttggcccaacagcagaagcggctcagttagagtccagcaaaagg
tttgccaaagagtttatggacagacatggaatcccaaccgcacaatggaaggctttcacc
aaacctgaagaagcctgcagcttcattttgagtgcagacttccctgctttggttgtgaag
gccagtggtcttgcagctggaaaaggggtgattgttgcaaagagcaaagaagaggcctgc
aaagctgtacaagagatcatgcagtgtctgtgtttcactgatggcaagactgtggccccc
atgcccccagcacaggaccataagcgattactggagggagatggtggccctaacacaggg
ggaatgggagcctattgtccagcccctcaggtttctaatgatctattactaaaaattaaa
gatactgttcttcagaggacagtggatggcatgcagcaagagggtactccatatacagaa
aaccacaccgccctaactgttgtcatggcaagtaaaggttatcctggagactacaccaag
ggtgtagagataacagggtttcctgaggctcaagctctaggactggaggtgttccatgca
ggcactgccctcaaaaatggcaaagtagtaactcatgggggtagagttcttgcagtcaca
gccatccgggaaaatctcatatcagcccttgaggaagccaagaaaggactagctgctata
aagtttgagggagcaatttataggaaagacgtcggctttcgtgccatagctttcctccag
cagcccaggagtttgacttacaaggaatctggagtagatatcgcagctggaaatatgctg
gtcaagaaaattcagcctttagcaaaagccacttccagatcaggctgtaaagttgatctt
ggaggttttgctggtctttttgatttaaaagcagctggtttcaaagatccccttctggcc
tctggaacagatggcgttggaactaaactaaagattgcccagctatgcaataaacatgat
accattggtcaagatttggtagcaatgtgtgttaatgatattctggcacaaggagcagag
cccctcttcttccttgattacttttcctgtggaaaacttgacctcagtgtaactgaagct
gttgttgctggaattgctaaagcttgtggaaaagctggatgtgctctccttggaggtgaa
acagcagaaatgcctgacatgtatccccctggagagtatgacctagctgggtttgccgtt
ggtgccatggagcgagatcagaaactccctcacctggaaagaatcactgagggtgatgtt
gttgttggaatagcttcatctggtcttcatagcaatggatttagccttgtgaggaaaatc
gtggcaaaatcttccctccagtactcctctccagcacctgatggttgtggtgaccagact
ttaggacatgtcaaagcctttgcccatattactggtggaggattactagagaacatcccc
agagtcctccctgagaaacttggggtagatttagatgcccagacctggaggatccccagg
gtcttctcatggttgcagcaggaaggacacctctctgaggaagagatggccagaacattt
aactgtggggttggcgctgtccttgtggtatcaaaggagcagacagagcagattctgagg
gatatccagcagcacaaggaagaagcctgggtgattggcagtgtggttgcacgagctgaa
ggatcgaacctgcaagcacttatagacagtactcgggaaccaaatagctctgcacaaatt
gatattgttatctccaacaaagccgcagtagctgggttagataaagcggaaagagctggt
attcccactagagtaattaatcataaactgtataaaaatcgtgtagaatttgacagtgca
attgacctagtccttgaagagttctccatagacatagtctgtcttgcaggattcatgaga
attctttctggcccctttgtccaaaagtggaatggaaaaatgctcaatatccacccatcc
ttgctcccttcttttaagggttcaaatgcccatgagcaagccctggaaaccggagtcaca
gttactgggtgcactgtacactttgtagctgaagatgtggatgctggacagattattttg
caagaagctgttcccgtgaagaggggtgatactgtcgcaactctttctgaaagagtaaaa
ttagcagaacataaaatatttcctgcagcccttcagctggtggccagtggaactgtacag
cttggagaaaatggcaagatctgttgggttaaagaggaatga