Result of FASTA (omim) for pF1KB6330
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6330, 288 aa
  1>>>pF1KB6330 288 - 288 aa - 288 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0100+/-0.000327; mu= 17.9025+/- 0.020
 mean_var=74.8785+/-14.814, 0's: 0 Z-trim(116.1): 20  B-trim: 4 in 2/53
 Lambda= 0.148216
 statistics sampled from 27081 (27101) to 27081 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.318), width:  16
 Scan time:  7.560

The best scores are:                                      opt bits E(85289)
NP_005524 (OMIM: 600735) interferon-induced 35 kDa ( 288) 1893 413.7  2e-115
NP_001317159 (OMIM: 600735) interferon-induced 35  ( 286) 1867 408.2 9.6e-114
XP_016880073 (OMIM: 600735) PREDICTED: interferon- ( 268) 1769 387.2 1.9e-107
XP_016880074 (OMIM: 600735) PREDICTED: interferon- ( 266) 1743 381.6 8.7e-106
NP_004679 (OMIM: 603525) N-myc-interactor [Homo sa ( 307)  392 92.8 8.9e-19
XP_005246998 (OMIM: 603525) PREDICTED: N-myc-inter ( 307)  392 92.8 8.9e-19
XP_016860736 (OMIM: 603525) PREDICTED: N-myc-inter ( 307)  392 92.8 8.9e-19


>>NP_005524 (OMIM: 600735) interferon-induced 35 kDa pro  (288 aa)
 initn: 1893 init1: 1893 opt: 1893  Z-score: 2193.1  bits: 413.7 E(85289): 2e-115
Smith-Waterman score: 1893; 99.7% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KB6 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VTTIQVMMSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
              190       200       210       220       230       240

              250       260       270       280        
pF1KB6 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
              250       260       270       280        

>>NP_001317159 (OMIM: 600735) interferon-induced 35 kDa   (286 aa)
 initn: 1069 init1: 1069 opt: 1867  Z-score: 2163.1  bits: 408.2 E(85289): 9.6e-114
Smith-Waterman score: 1867; 99.0% identity (99.3% similar) in 288 aa overlap (1-288:1-286)

               10        20        30        40        50        60
pF1KB6 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
       :::::.  ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTTIQM--SSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
                130       140       150       160       170        

              190       200       210       220       230       240
pF1KB6 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
      180       190       200       210       220       230        

              250       260       270       280        
pF1KB6 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
      240       250       260       270       280      

>>XP_016880073 (OMIM: 600735) PREDICTED: interferon-indu  (268 aa)
 initn: 1769 init1: 1769 opt: 1769  Z-score: 2050.2  bits: 387.2 E(85289): 1.9e-107
Smith-Waterman score: 1769; 99.6% identity (100.0% similar) in 268 aa overlap (21-288:1-268)

               10        20        30        40        50        60
pF1KB6 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
                           ::::::::::::::::::::::::::::::::::::::::
XP_016                     MRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
                                   10        20        30        40

               70        80        90       100       110       120
pF1KB6 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KB6 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTTIQVMMSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KB6 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
              170       180       190       200       210       220

              250       260       270       280        
pF1KB6 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
              230       240       250       260        

>>XP_016880074 (OMIM: 600735) PREDICTED: interferon-indu  (266 aa)
 initn: 1069 init1: 1069 opt: 1743  Z-score: 2020.2  bits: 381.6 E(85289): 8.7e-106
Smith-Waterman score: 1743; 98.9% identity (99.3% similar) in 268 aa overlap (21-288:1-266)

               10        20        30        40        50        60
pF1KB6 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
                           ::::::::::::::::::::::::::::::::::::::::
XP_016                     MRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
                                   10        20        30        40

               70        80        90       100       110       120
pF1KB6 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KB6 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
       :::::.  ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTTIQM--SSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
                110       120       130       140       150        

              190       200       210       220       230       240
pF1KB6 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
      160       170       180       190       200       210        

              250       260       270       280        
pF1KB6 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
      220       230       240       250       260      

>>NP_004679 (OMIM: 603525) N-myc-interactor [Homo sapien  (307 aa)
 initn: 244 init1: 117 opt: 392  Z-score: 458.1  bits: 92.8 E(85289): 8.9e-19
Smith-Waterman score: 392; 29.0% identity (64.5% similar) in 290 aa overlap (6-283:23-305)

                                10        20         30         40 
pF1KB6                  MSAPLDAALHALQEEQARLKMRLW-DLQQLRKELGDSPKD-KV
                             :   ..: .: .. ...:  ..:.:. :: .. :. ..
NP_004 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
               10        20        30        40        50        60

              50             60        70        80        90      
pF1KB6 PFSVPKIPLVFRG-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQ
         ..:.  . : .     . .:  ..  :.  . ..   .  :.:::::.  .::..:..
NP_004 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
               70        80        90       100       110       120

        100       110       120       130       140       150      
pF1KB6 QKEHTINMEECRLRVQVQPLELPMVTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDK
       ...: .....  :.: ..:  .:. . .. .:  ..:  .. :: .: .::  :... ::
NP_004 MSKHHVQIKDVNLEVTAKP--VPLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDK
              130         140       150       160         170      

        160       170         180       190       200       210    
pF1KB6 LEIFFGKTRNGGGDVDVREL--LPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRV-
       ::. :.:.:::::.::  .     ::... :.. :::... .  ..  ::  .:.  :: 
NP_004 LELSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVT
        180       190       200       210       220         230    

            220       230       240        250       260       270 
pF1KB6 -SPYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALT
        :::.. ...: .: :    :.::. ..  : .:   ..:...::::.   :::::... 
NP_004 VSPYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVK
          240       250       260       270       280       290    

             280        
pF1KB6 VVPQGQQGLAVFTSESG
           ::  .: :     
NP_004 C-SLGQPHIAYFEE   
           300          

>>XP_005246998 (OMIM: 603525) PREDICTED: N-myc-interacto  (307 aa)
 initn: 244 init1: 117 opt: 392  Z-score: 458.1  bits: 92.8 E(85289): 8.9e-19
Smith-Waterman score: 392; 29.0% identity (64.5% similar) in 290 aa overlap (6-283:23-305)

                                10        20         30         40 
pF1KB6                  MSAPLDAALHALQEEQARLKMRLW-DLQQLRKELGDSPKD-KV
                             :   ..: .: .. ...:  ..:.:. :: .. :. ..
XP_005 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
               10        20        30        40        50        60

              50             60        70        80        90      
pF1KB6 PFSVPKIPLVFRG-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQ
         ..:.  . : .     . .:  ..  :.  . ..   .  :.:::::.  .::..:..
XP_005 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
               70        80        90       100       110       120

        100       110       120       130       140       150      
pF1KB6 QKEHTINMEECRLRVQVQPLELPMVTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDK
       ...: .....  :.: ..:  .:. . .. .:  ..:  .. :: .: .::  :... ::
XP_005 MSKHHVQIKDVNLEVTAKP--VPLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDK
              130         140       150       160         170      

        160       170         180       190       200       210    
pF1KB6 LEIFFGKTRNGGGDVDVREL--LPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRV-
       ::. :.:.:::::.::  .     ::... :.. :::... .  ..  ::  .:.  :: 
XP_005 LELSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVT
        180       190       200       210       220         230    

            220       230       240        250       260       270 
pF1KB6 -SPYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALT
        :::.. ...: .: :    :.::. ..  : .:   ..:...::::.   :::::... 
XP_005 VSPYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVK
          240       250       260       270       280       290    

             280        
pF1KB6 VVPQGQQGLAVFTSESG
           ::  .: :     
XP_005 C-SLGQPHIAYFEE   
           300          

>>XP_016860736 (OMIM: 603525) PREDICTED: N-myc-interacto  (307 aa)
 initn: 244 init1: 117 opt: 392  Z-score: 458.1  bits: 92.8 E(85289): 8.9e-19
Smith-Waterman score: 392; 29.0% identity (64.5% similar) in 290 aa overlap (6-283:23-305)

                                10        20         30         40 
pF1KB6                  MSAPLDAALHALQEEQARLKMRLW-DLQQLRKELGDSPKD-KV
                             :   ..: .: .. ...:  ..:.:. :: .. :. ..
XP_016 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
               10        20        30        40        50        60

              50             60        70        80        90      
pF1KB6 PFSVPKIPLVFRG-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQ
         ..:.  . : .     . .:  ..  :.  . ..   .  :.:::::.  .::..:..
XP_016 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
               70        80        90       100       110       120

        100       110       120       130       140       150      
pF1KB6 QKEHTINMEECRLRVQVQPLELPMVTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDK
       ...: .....  :.: ..:  .:. . .. .:  ..:  .. :: .: .::  :... ::
XP_016 MSKHHVQIKDVNLEVTAKP--VPLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDK
              130         140       150       160         170      

        160       170         180       190       200       210    
pF1KB6 LEIFFGKTRNGGGDVDVREL--LPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRV-
       ::. :.:.:::::.::  .     ::... :.. :::... .  ..  ::  .:.  :: 
XP_016 LELSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVT
        180       190       200       210       220         230    

            220       230       240        250       260       270 
pF1KB6 -SPYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALT
        :::.. ...: .: :    :.::. ..  : .:   ..:...::::.   :::::... 
XP_016 VSPYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVK
          240       250       260       270       280       290    

             280        
pF1KB6 VVPQGQQGLAVFTSESG
           ::  .: :     
XP_016 C-SLGQPHIAYFEE   
           300          




288 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:31:26 2016 done: Fri Nov  4 20:31:27 2016
 Total Scan time:  7.560 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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