Result of FASTA (omim) for pF1KE0510
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0510, 235 aa
  1>>>pF1KE0510 235 - 235 aa - 235 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5034+/-0.000296; mu= 15.4642+/- 0.019
 mean_var=92.5409+/-18.831, 0's: 0 Z-trim(119.0): 7  B-trim: 0 in 0/55
 Lambda= 0.133324
 statistics sampled from 32635 (32642) to 32635 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.383), width:  16
 Scan time:  5.360

The best scores are:                                      opt bits E(85289)
NP_741999 (OMIM: 608142) iron-sulfur cluster co-ch ( 235) 1620 320.8 1.3e-87
NP_001305243 (OMIM: 608142) iron-sulfur cluster co ( 150) 1045 210.0 1.8e-54
NP_001305244 (OMIM: 608142) iron-sulfur cluster co ( 143) 1041 209.3 2.9e-54
XP_005261416 (OMIM: 608142) PREDICTED: iron-sulfur ( 223)  985 198.7 7.1e-51
XP_016884109 (OMIM: 608142) PREDICTED: iron-sulfur (  79)  480 101.1 5.7e-22
XP_016884108 (OMIM: 608142) PREDICTED: iron-sulfur (  79)  480 101.1 5.7e-22
NP_001305245 (OMIM: 608142) iron-sulfur cluster co (  79)  480 101.1 5.7e-22


>>NP_741999 (OMIM: 608142) iron-sulfur cluster co-chaper  (235 aa)
 initn: 1620 init1: 1620 opt: 1620  Z-score: 1694.2  bits: 320.8 E(85289): 1.3e-87
Smith-Waterman score: 1620; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KE0 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
              130       140       150       160       170       180

              190       200       210       220       230     
pF1KE0 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
              190       200       210       220       230     

>>NP_001305243 (OMIM: 608142) iron-sulfur cluster co-cha  (150 aa)
 initn: 1045 init1: 1045 opt: 1045  Z-score: 1099.0  bits: 210.0 E(85289): 1.8e-54
Smith-Waterman score: 1045; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KE0 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
       ::::::::::::::::::::::                                      
NP_001 STLVNDAYKTLLAPLSRGLYLLNRKNLLTM                              
              130       140       150                              

>>NP_001305244 (OMIM: 608142) iron-sulfur cluster co-cha  (143 aa)
 initn: 1041 init1: 1041 opt: 1041  Z-score: 1095.2  bits: 209.3 E(85289): 2.9e-54
Smith-Waterman score: 1041; 99.3% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KE0 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
       :::::::::::::::::::::.                                      
NP_001 STLVNDAYKTLLAPLSRGLYLVS                                     
              130       140                                        

>>XP_005261416 (OMIM: 608142) PREDICTED: iron-sulfur clu  (223 aa)
 initn: 985 init1: 985 opt: 985  Z-score: 1034.4  bits: 198.7 E(85289): 7.1e-51
Smith-Waterman score: 985; 100.0% identity (100.0% similar) in 156 aa overlap (80-235:68-223)

      50        60        70        80        90       100         
pF1KE0 PGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQR
                                     ::::::::::::::::::::::::::::::
XP_005 HLTPLETTSALWTGTSDGFGKRARARDTSSNRSFRVDTAKLQHRYQQLQRLVHPDFFSQR
        40        50        60        70        80        90       

     110       120       130       140       150       160         
pF1KE0 SQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEIN
       100       110       120       130       140       150       

     170       180       190       200       210       220         
pF1KE0 EKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIK
       160       170       180       190       200       210       

     230     
pF1KE0 LKKIPL
       ::::::
XP_005 LKKIPL
       220   

>>XP_016884109 (OMIM: 608142) PREDICTED: iron-sulfur clu  (79 aa)
 initn: 480 init1: 480 opt: 480  Z-score: 515.4  bits: 101.1 E(85289): 5.7e-22
Smith-Waterman score: 480; 100.0% identity (100.0% similar) in 79 aa overlap (157-235:1-79)

        130       140       150       160       170       180      
pF1KE0 AYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIES
                                     ::::::::::::::::::::::::::::::
XP_016                               MDRQFLIEIMEINEKLAEAESEAAMKEIES
                                             10        20        30

        190       200       210       220       230     
pF1KE0 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
               40        50        60        70         

>>XP_016884108 (OMIM: 608142) PREDICTED: iron-sulfur clu  (79 aa)
 initn: 480 init1: 480 opt: 480  Z-score: 515.4  bits: 101.1 E(85289): 5.7e-22
Smith-Waterman score: 480; 100.0% identity (100.0% similar) in 79 aa overlap (157-235:1-79)

        130       140       150       160       170       180      
pF1KE0 AYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIES
                                     ::::::::::::::::::::::::::::::
XP_016                               MDRQFLIEIMEINEKLAEAESEAAMKEIES
                                             10        20        30

        190       200       210       220       230     
pF1KE0 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
               40        50        60        70         

>>NP_001305245 (OMIM: 608142) iron-sulfur cluster co-cha  (79 aa)
 initn: 480 init1: 480 opt: 480  Z-score: 515.4  bits: 101.1 E(85289): 5.7e-22
Smith-Waterman score: 480; 100.0% identity (100.0% similar) in 79 aa overlap (157-235:1-79)

        130       140       150       160       170       180      
pF1KE0 AYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIES
                                     ::::::::::::::::::::::::::::::
NP_001                               MDRQFLIEIMEINEKLAEAESEAAMKEIES
                                             10        20        30

        190       200       210       220       230     
pF1KE0 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
               40        50        60        70         




235 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:09:16 2016 done: Thu Nov  3 03:09:17 2016
 Total Scan time:  5.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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