GENSCAN 1.0	Date run:  5-Nov-116	Time: 02:08:07

Sequence gi568815597r:39582539_39784603 : 202065 bp : 48.95% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   2211   2350  140  2  2   57   43   129 0.478   4.91
 1.02 Intr +  13871  14029  159  2  0   56   78   124 0.244   7.30
 1.03 Term +  27046  27127   82  1  1   75   51    86 0.007   0.77
 1.04 PlyA +  32005  32010    6                               1.05

 2.06 PlyA -  36564  36559    6                               1.05
 2.05 Term -  44642  43969  674  0  2  121   49   176 0.273  10.92
 2.04 Intr -  47770  47689   82  1  1  127   80    34 0.718   5.71
 2.03 Intr -  49041  48904  138  0  0   49   83   102 0.216   6.46
 2.02 Intr -  50177  50111   67  1  1  104   84     3 0.169   0.41
 2.01 Init -  57087  57008   80  0  2   85   94   146 0.977  15.43
 2.00 Prom -  73866  73827   40                              -3.66

 3.15 PlyA -  73884  73879    6                              -0.45
 3.14 Term -  76948  76583  366  1  0   82   37   264 0.682  15.30
 3.13 Intr -  78725  78541  185  0  2   68   47   427 0.996  36.11
 3.12 Intr -  80896  80774  123  2  0  106  110   225 0.999  27.06
 3.11 Intr -  83112  82983  130  0  1   95   89   313 0.977  32.37
 3.10 Intr -  83698  83531  168  1  0   83  100   330 0.987  33.84
 3.09 Intr -  86672  86596   77  0  2   94   44    40 0.938  -0.57
 3.08 Intr -  87340  87081  260  0  2   71  -28   185 0.846   2.31
 3.07 Intr -  89567  89349  219  1  0   89   67   144 0.236   9.82
 3.06 Intr - 100195 100002  194  1  2  114   -1   330 0.019  24.99
 3.05 Intr - 101614 101399  216  1  0   76   64   627 0.999  57.80
 3.04 Intr - 102073 101904  170  2  2   89   86   381 0.418  37.67
 3.03 Intr - 108632 108527  106  2  1   87   94    -1 0.013   0.19
 3.02 Intr - 112467 112410   58  2  1   98   70    99 0.422   7.99
 3.01 Init - 121123 121062   62  1  2   86   64    52 0.142   3.32
 3.00 Prom - 145772 145733   40                              -1.66

 4.00 Prom + 155307 155346   40                              -3.16
 4.01 Init + 156363 156393   31  2  1   95   80    61 0.962   6.16
 4.02 Intr + 157627 157725   99  2  0   57  109   138 0.995  12.88
 4.03 Intr + 158828 158871   44  0  2   71   78    30 0.909  -1.74
 4.04 Intr + 159357 159383   27  2  0  116   56    51 0.817   3.01
 4.05 Intr + 160678 160759   82  0  1   67  109    46 0.887   3.81
 4.06 Intr + 161286 161386  101  1  2   87   78    92 0.995   7.93
 4.07 Intr + 162837 162960  124  2  1   76   99   228 0.954  22.86
 4.08 Intr + 166365 166550  186  1  0   81   91   222 0.926  21.46
 4.09 Intr + 170372 170514  143  0  2   96   87   154 0.997  16.17
 4.10 Term + 170749 170817   69  0  0   66   54   194 0.985  11.74
 4.11 PlyA + 171144 171149    6                               1.05

 5.09 PlyA - 171455 171450    6                               1.05
 5.08 Term - 178030 177881  150  1  0  115   47   249 0.998  21.41
 5.07 Intr - 180664 180554  111  1  0  124   65   116 0.996  13.48
 5.06 Intr - 181253 181174   80  0  2   97   51   130 0.888   9.47
 5.05 Intr - 182279 182085  195  0  0  135   73   140 0.863  16.59
 5.04 Intr - 182382 182311   72  1  0   51   86    50 0.376   0.48
 5.03 Intr - 182857 182742  116  0  2   41   21   117 0.295   0.39
 5.02 Intr - 185034 184997   38  0  2  106   86   -21 0.082  -3.44
 5.01 Init - 188717 187176 1542  2  0   83   38  2872 0.299 272.11
 5.00 Prom - 189183 189144   40                              -9.46

 6.05 PlyA - 190337 190332    6                               1.05
 6.04 Term - 191365 191328   38  2  2  101   49     1 0.503  -5.00
 6.03 Intr - 191918 191770  149  1  2  109   89   214 0.939  23.48
 6.02 Intr - 192500 192311  190  0  1   79   51   292 0.254  23.24
 6.01 Init - 197207 197192   16  2  1   93   82     9 0.088   1.34

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  33766  33621  146  1  2   67   80   121 0.884   6.94
S.002 Init +  61359  61428   70  2  1   96   58    52 0.854   4.34
S.003 Term - 100195  99998  198  1  0  114   43   346 0.979  30.10
S.004 Init + 108793 108861   69  0  0   47   52   127 0.862   4.05
S.005 Term + 109700 109882  183  1  0  127   47    98 0.939   7.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:39582539_39784603|GENSCAN_predicted_peptide_1|126_aa
MTKNQILKAETNVENPSSVEIRGMNEENHNCYSPVQVPRLNTGYKDDPWHVDTTQIVAAP
VELGIASASAFEQGAPRCHFAPGLTNDVADPEQKIEEGGKNALILATVAEGREEWGEDDE
TGPAVK

>gi568815597r:39582539_39784603|GENSCAN_predicted_CDS_1|381_bp
atgaccaagaaccagatattaaaagctgaaacaaatgtggaaaatccatcatctgtggag
atcaggggtatgaacgaggagaatcataactgctattctcctgttcaagtccccaggctg
aacactggctacaaagatgatccctggcatgttgacaccactcagattgtggctgcccct
gtggagttaggaattgcctcggcatcagccttcgaacaaggggctccacgctgtcatttt
gcacctggcctcacaaatgatgtagctgatcctgagcagaagattgaggaaggtggaaag
aatgctctaatactggccacggtcgcagaagggagggaagaatggggcgaggacgatgaa
acagggccagcggtgaagtga

>gi568815597r:39582539_39784603|GENSCAN_predicted_peptide_2|346_aa
MKRPKEPSGSDGESDGPIDVGQEGQLSQMARPLSTPSSSQMQARKKHRGIIEKRRRDRIN
SSLSELRRLVPTAFEKQVCDIADCARGNTVWVADKGSSKLEKAEVLQMTVDHLKMLHATG
GTGFFDARALAVDFRSIGFRECLTEVIRYLGVLEGPSSRADPVRIRLLSHLNSYAAEMEP
SPTPTGPLAFPAWPWSFFHSCPGLPALSNQLAILGRVPSPVLPGVSSPAYPIPALRTAPL
RRATGIILPARRNVLPSRGASSTRRARPLERPATPVPVAPSSRAARSSHIAPLLQSSSPT
PPGPTGSAAYVAVPTPNSSSPGPAGRPAGAMLYHSWVSEITEIGAF

>gi568815597r:39582539_39784603|GENSCAN_predicted_CDS_2|1041_bp
atgaagcgacccaaggagccgagcggctccgacggggagtccgacggacccatcgacgtg
ggccaagagggccagctgagccagatggccaggccgctgtccacccccagctcttcgcag
atgcaagccaggaagaaacacagagggatcatagagaaacggcgtcgagaccgcatcaac
agtagcctttctgaattgcgacgcttggtccccactgcctttgagaaacaggtatgtgac
attgctgattgtgctagaggaaatactgtgtgggtggcagataagggctcttccaagctg
gagaaagccgaggtcttgcagatgacggtggatcacttgaaaatgctccatgccactggt
gggacaggattctttgatgcccgagccctggcagttgacttccggagcattggttttcgg
gagtgcctcactgaggtcatcaggtacctgggggtccttgaagggcccagcagccgtgca
gaccccgtccggattcgccttctctcccacctcaacagctacgcagccgagatggagcct
tcgcccacgcccactggccctttggccttccctgcctggccctggtctttcttccatagc
tgtccagggctgccagccctgagcaaccagctcgccatcctgggaagagtgcccagccct
gtcctccccggtgtctcctctcctgcttaccccatcccagccctccgaaccgctcccctt
cgcagagccacaggcatcatcctgccagcccggaggaatgtgctgcccagtcgaggggca
tcttccacccggagggcccgccccctagagaggccagcgacccctgtgcctgtcgccccc
agcagcagggctgccaggagcagccacatcgctcccctcctgcagtcttcctccccaaca
ccccctggtcctacagggtcggctgcttacgtggctgttcccacccccaactcatcctcc
ccagggccagctgggaggccagcgggagccatgctctaccactcctgggtctctgaaatc
actgaaatcggggctttctga

>gi568815597r:39582539_39784603|GENSCAN_predicted_peptide_3|777_aa
MIVKRRNLYRKPFKELNQQERACSFNNVEQVFAKTPSLRTAAATEEPTPGQETPHLSPGP
WVQRRRQSRLLIPSSGPAMGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGI
LNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLN
WAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDK
DDQITLEEFKEAAKSDPSIVLLLQCDMQNPAPATSASTPPPALAGPGQSRSMEPGQPREP
QEPREPGPGAETAAAPVWEEAKIFYDNLAPKKKPKSVKAMHGKITLGWIGKGESGSKPTS
EKAGASLKRKLDECQCCGLSDAEEGMETGDWGSESISAQNPFPPQAPRNRRAQAQLSVMT
PGSAPDSHAGAISLTLKGRESCQHPGFLELRAPRPKPQNAVTIAVSSRALFRMDEEQQIY
TEQGVEEYVRYQLEHENEPFSPGPAFPFVKALEAVNRRLRELYPDSEDVFDIVLMTNNHA
QVGVRLINSINHYDLFIERFCMTGGNSPICYLKAYHTNLYLSADAEKVREAIDEGIAAAT
IFSPSRDVVVSQSQLRVAFDGDAVLFSDESERIVKAHGLDRFFEHEKAHENKPLAQGPLK
GFLEALGRLQKKFYSKGLRLECPIRTYLVTARSAASSGARALKTLRSWGLETDEALFLAG
APKGPLLEKIRPHIFFDDQMFHVAGAQEMGTVAAHVPYGVAQTPRRTAPAKQAPSAQ

>gi568815597r:39582539_39784603|GENSCAN_predicted_CDS_3|2334_bp
atgattgtaaagaggagaaacctctacagaaaaccattcaaggaacttaatcagcaagaa
agagcctgctccttcaacaacgtggaacaggtgtttgccaagactccaagcctgagaaca
gcggcagcaactgaagagcccacccctgggcaggagaccccccacctcagtccaggccca
tgggtgcagagaaggaggcagagccgcctacttatccccagctcaggccccgccatgggg
aagaccaacagcaagctggcccccgaggtgctggaggaccttgttcagaacactgagttc
agcgagcaggagctgaagcagtggtacaagggcttcctgaaggactgccccagcggcatc
ctcaacctggaggagtttcagcagctctacatcaagttcttcccctacggcgacgcctcc
aagttcgcgcagcacgctttccgcaccttcgacaagaacggcgacggcaccatcgacttc
cgggagttcatctgcgccctgtcggtcacctcccgcggcagcttcgagcagaagctcaac
tgggcctttgagatgtacgacctggacggcgacgggcgcatcacgcgcctggagatgctg
gagatcatcgaggcaatctacaagatggtgggcaccgtgatcatgatgcgcatgaaccag
gacgggctcacgccccagcagcgtgtggacaagatcttcaagaagatggaccaggataag
gacgaccagattacattggaggagttcaaggaggcagccaagagtgacccatccattgtg
ttgctgctgcagtgtgacatgcagaacccagccccagccacctccgcgtctacgccgccg
cctgctctggccgggccgggtcagagccggagcatggaacctgggcagccccgggagccc
caggagccccgcgagcccgggccaggagcggagaccgctgcggccccggtctgggaggaa
gccaagattttctacgacaacctcgcgcccaagaagaaacccaaatcggtaaaagcaatg
cacggaaagatcactctgggatggattggaaagggtgagtccggcagcaaacccaccagt
gagaaggctggtgcctctctgaagaggaagctggatgaatgtcaatgctgtggcctgagt
gatgcagaagaagggatggagactggggactggggcagtgaaagcatcagtgctcaaaat
ccatttcctccccaggcaccaaggaaccggagagctcaggcccagttgtcagtcatgacc
cctggatcagcccctgactctcatgccggagccatcagcctgaccctgaaaggcagagag
agctgccagcaccctggtttcctggagctcagagctcccagacccaagcctcagaatgca
gtcaccatcgctgtgtcctcccgagccttgtttcgcatggacgaggagcagcagatctac
acggagcagggcgtggaggagtacgtgcgctaccagctggaacatgagaacgaacccttc
agtcccgggccagccttcccttttgtgaaggctctggaggccgtgaacaggcggctgcgg
gagctgtaccctgatagtgaggacgtcttcgacatcgtcctcatgactaacaaccatgct
caagtgggtgtccgcctcatcaacagtatcaaccactatgacctgttcatcgagaggttc
tgcatgacaggtgggaacagcccgatctgctacctcaaggcctatcacaccaacctctac
ttgtcagccgatgcggaaaaagtgcgagaagccattgatgaggggatcgcagctgccacc
atcttcagccccagcagggatgtggttgtgtcccagagtcagctgcgcgtggccttcgat
ggggacgccgtgctcttctcggacgagtcggagcgcatcgtcaaggcccacgggctggac
cgattcttcgagcatgagaaggcccacgagaacaaacctctggctcagggccccttaaag
ggctttctggaggcactgggtaggttgcagaagaagttctactccaaaggcctgcggctg
gagtgcccaattcgtacctacttggtgacagcacgcagtgcagccagttccggggcccgg
gctctcaagaccctgcgcagctggggcctggagacagatgaagccttgttccttgctgga
gcgcccaagggccctctccttgagaagatccgcccacacatcttctttgatgaccagatg
ttccatgtggctggggctcaggagatgggcactgtggccgcccatgtgccttatggtgtg
gcacagacaccccggcggactgcacctgcaaagcaggccccatctgcacagtag

>gi568815597r:39582539_39784603|GENSCAN_predicted_peptide_4|301_aa
MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA
AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSE
PPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK
GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG
PNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY
V

>gi568815597r:39582539_39784603|GENSCAN_predicted_CDS_4|906_bp
atggccaccaccaagcgcgtcttgtacgtgggtggactggcagaggaagtggacgacaaa
gttcttcatgctgcgttcattccttttggagacatcacagatattcagattcctctggat
tatgaaacagaaaagcaccgaggatttgcttttgttgaatttgagttggcagaggatgct
gcagcagctatcgacaacatgaatgaatctgagctttttggacgtacaattcgtgtcaat
ttggccaaaccaatgagaattaaggaaggctcttccaggccagtttggtcagatgatgac
tggttgaagaagttttctgggaagacgcttgaagagaataaagaggaagaagggtcagag
cctcccaaagcagagacccaggagggagagcccattgctaaaaaggcccgctcaaatcct
caggtgtacatggacatcaagattgggaacaagccggctggccgcatccagatgctcctg
cgttctgatgtcgtgcccatgacagcagagaatttccgctgcctgtgcactcatgaaaag
ggctttggctttaagggaagcagcttccaccgcatcatcccccagttcatgtgccagggc
ggtgatttcacaaaccacaatggcactgggggcaagtccatctatgggaagaagttcgat
gatgaaaactttatcctcaagcatacgggaccaggtctactatccatggccaactctggc
ccaaacaccaatggctctcagttcttcctgacatgtgacaagacagactggctggatggc
aagcatgtggtgtttggagaggtcaccgaaggcctagatgtcttgcggcaaattgaggcc
cagggcagcaaggacgggaagccaaagcagaaggtgatcatcgccgactgtggggagtac
gtgtga

>gi568815597r:39582539_39784603|GENSCAN_predicted_peptide_5|767_aa
MAALRLLASVLGRGVPAGGSGLALSQGCARCFATSPRLRAKFYADPVEMVKDISDGATVM
IGGFGLCGIPENLIAALLRTRVKDLQVVSSNVGVEDFGLGLLLAARQVRRIVCSYVGENT
LCESQYLAGELELELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGAPIRYTPDGHL
ALMSQPREVREFNGDHFLLERAIRADFALVKGWKADRAGNVVFRRSARNFNVPMCKAADV
TAVEVEEIVEVGAFPPEDIHVPNIYVDRVIKGQKYEKRIERLTILKEEDGDAGKEEDART
RIIRRAALEFEDGMYANLGIGIPLLASNFISPSMTVHLHSENGILGLGPFPTEDEVDADL
INAGKQTVTVLPGGCFFASDDSFAMIRGGHIQLTMLGAMQVSKYGDLANWMIPGKKVKGM
GGAMDLVSSQKTRVVVTMQHCTKDNTPKIMEKCTMPLTGKRCVDRIITEKAVFDVHRKKE
LTLRELWEGLTVDDIKKSTGCAFAVSPNLRPMQQPAGARESCLRMGGETVNALLLGCAQQ
NKHSLNLADATTSCLGDKFDIHTPETSTLLDLPRPRQRDRCCVCCRATARHSVDPGLAGL
LGQRAPRSQQPFVVTFFRASPSPIRTPRAVRPLRRRQPKKSNELPQANRLPGIFDDVHGS
HGRQVCRRHELYVSFQDLGWLDWVIAPQGYSAYYCEGECSFPLDSCMNATNHAILQSLVH
LMMPDAVPKACCAPTKLSATSVLYYDSSNNVILRKHRNMVVKACGCH

>gi568815597r:39582539_39784603|GENSCAN_predicted_CDS_5|2304_bp
atggcggcgctgcggctcctggcgtcagtgctcgggcgcggggtccccgccggcggctca
gggctcgcgctgtcccagggctgcgcccgctgctttgccaccagtccccggctccgtgcc
aagttctacgcggacccggtggagatggtgaaggacatctctgacggggcgaccgtcatg
atcgggggcttcgggctctgcgggatccccgagaacctgatcgccgcgctgctcaggacc
cgcgtgaaagacctgcaggtggtcagcagcaacgtgggcgtggaggacttcggcctgggc
ctcctgctggccgccaggcaggtccgtcgcatcgtctgttcctacgtgggcgagaacacc
ctgtgcgagagccagtacctggcaggagagctggagctggagctcacgccccagggcacc
ctggccgagcgcatccgcgcggggggcgccggggtgcccgccttctacacccccacgggc
tacgggaccctggtccaggaagggggcgcccccatccgctacaccccggacggccacctg
gcgctcatgagccagccccgagaggtgagggagttcaacggcgaccacttccttttggag
cgcgccatccgggcagacttcgccctggtgaaagggtggaaggccgaccgggcaggaaac
gtggtcttcaggagaagcgcccgcaatttcaacgtgcccatgtgcaaagctgcagacgtc
acggcggtggaggtggaagagatcgtggaggtgggggctttccccccagaagacatccac
gttcctaacatttatgtagatcgcgtgataaaggggcagaaatacgagaaacgaattgag
cgcttaacgatcctgaaagaggaagatggagacgctggaaaggaagaggacgccaggacg
cgcatcatcagacgcgcagctctggaatttgaggacggcatgtacgccaatctgggcata
ggcatccccctgctggccagcaacttcatcagtcccagcatgactgtccatcttcacagt
gagaacgggatcctgggcctgggcccgtttcccacggaagatgaggtggatgccgacctc
atcaatgcaggcaagcagacggtcacggtgcttcccgggggctgcttcttcgccagcgac
gactccttcgccatgatccgagggggacacatccaactaaccatgcttggagccatgcag
gtttccaaatacggcgacctggcgaactggatgatccctggcaagaaggtgaaaggcatg
ggcggtgccatggacttggtgtccagtcagaagaccagagtggtggtcaccatgcagcac
tgcacaaaggacaacacccccaagatcatggagaaatgcaccatgccgctgaccgggaag
cggtgcgtggaccgcatcatcaccgagaaggccgtgtttgacgtgcacaggaagaaagag
ctgacgctgagggagctctgggagggcctgacggtggacgacatcaaaaagagcacgggg
tgtgcctttgctgtgtccccgaacctcaggcccatgcagcagccagctggagccagggag
tcctgcctaagaatgggtggggagacagttaatgccctgctcttgggctgtgcccagcag
aacaagcactcgctcaacctggcagatgctaccacgagctgtctcggtgataagtttgac
attcacaccccagaaacctccacgctcctggacctgcccaggccccggcagagagaccgc
tgctgtgtctgctgcagggccactgcccggcacagcgtggatcctggcctggccggcctg
ctgggtcaacgggccccacgctcccaacagcctttcgtggtcactttcttcagggccagt
ccgagtcccatccgcacccctcgggcagtgaggccactgaggaggaggcagccgaagaaa
agcaacgagctgccgcaggccaaccgactcccagggatctttgatgacgtccacggctcc
cacggccggcaggtctgccgtcggcacgagctctacgtcagcttccaggacctcggctgg
ctggactgggtcatcgctccccaaggctactcggcctattactgtgagggggagtgctcc
ttcccactggactcctgcatgaatgccaccaaccacgccatcctgcagtccctggtgcac
ctgatgatgccagacgcagtccccaaggcgtgctgtgcacccaccaagctgagcgccacc
tctgtgctctactatgacagcagcaacaatgtcatcctgcgcaagcaccgcaacatggtg
gtcaaggcctgcggctgccactga

>gi568815597r:39582539_39784603|GENSCAN_predicted_peptide_6|130_aa
MVPDTVERDRALGHQEPHWKEFRFDLTQIPAGEAVTAAEFRIYKVPSIHLLNRTLHVSMF
QVVQEQSNRESDLFFLDLQTLRAGDEGWLVLDVTAASDCWLLKRHKDLGLRLYVETEDGD
TGESLFYARQ

>gi568815597r:39582539_39784603|GENSCAN_predicted_CDS_6|393_bp
atggtgcctgacacagtggagcgagaccgtgccctgggccaccaggagccccattggaag
gagttccgctttgacctgacccagatcccggctggggaggcggtcacagctgcggagttc
cggatttacaaggtgcccagcatccacctgctcaacaggaccctccacgtcagcatgttc
caggtggtccaggagcagtccaacagggagtctgacttgttctttttggatcttcagacg
ctccgagctggagacgagggctggctggtgctggatgtcacagcagccagtgactgctgg
ttgctgaagcgtcacaaggacctgggactccgcctctatgtggagactgaggacggtgac
actggggagagcctcttttatgccaggcagtag