GENSCAN 1.0	Date run:  3-Nov-116	Time: 20:32:50

Sequence gi568815592f:27047129_27247512 : 200384 bp : 40.95% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3024   3182  159  1  0    8   33   212 0.073   6.74
 1.02 Term +  22032  22516  485  1  2   56   28   318 0.956  16.52
 1.03 PlyA +  22966  22971    6                               1.05

 2.08 PlyA -  23579  23574    6                               1.05
 2.07 Term -  28899  28702  198  0  0   47   54   148 0.809   3.72
 2.06 Intr -  44948  44760  189  2  0   99   22   185 0.355  11.86
 2.05 Intr -  45426  45325  102  0  0  127   54    27 0.528   2.65
 2.04 Intr -  50574  50499   76  2  1  104   75    17 0.368   0.60
 2.03 Intr -  66676  66571  106  2  1   84   38    57 0.006  -1.35
 2.02 Intr -  67998  67736  263  2  2   65   80   101 0.020   3.21
 2.01 Init -  85622  85246  377  2  2   36    4   566 0.046  39.45
 2.00 Prom -  85702  85663   40                              -6.05

 3.00 Prom +  85824  85863   40                             -15.49
 3.01 Init +  85944  86332  389  2  2   48   32   591 0.814  45.82
 3.02 Term +  86598  86880  283  0  1    1   49   319 0.733  13.21
 3.03 PlyA +  87123  87128    6                               1.05

 4.00 Prom +  87886  87925   40                              -7.55
 4.01 Sngl +  92181  92492  312  2  0   28   36   603 0.942  44.78
 4.02 PlyA +  93487  93492    6                               1.05

 5.02 PlyA -  93684  93679    6                               1.05
 5.01 Sngl -  99670  99290  381  1  0   88   37   634 0.926  54.22
 5.00 Prom -  99766  99727   40                              -4.65

 6.00 Prom +  99945  99984   40                              -2.65
 6.01 Sngl + 100001 100387  387  1  0   46   49   566 0.999  44.46
 6.02 PlyA + 101775 101780    6                              -0.45

 7.05 PlyA - 102004 101999    6                               1.05
 7.04 Term - 104005 103928   78  1  0   64   55    87 0.331  -0.22
 7.03 Intr - 110696 110552  145  1  1   56   81   106 0.278   6.06
 7.02 Intr - 111141 110825  317  0  2   40   87   209 0.575   9.94
 7.01 Init - 111993 111958   36  0  0   68   58    46 0.455  -2.32
 7.00 Prom - 113442 113403   40                              -3.95

 8.00 Prom + 116170 116209   40                              -6.65
 8.01 Init + 129973 130024   52  0  1   26   48   105 0.050   1.67
 8.02 Intr + 130419 130580  162  1  0   70   80   116 0.013   8.03
 8.03 Intr + 133008 133319  312  1  0   77   36   162 0.016   5.13
 8.04 Intr + 133908 134285  378  1  0   85  -17   170 0.363   0.21
 8.05 Intr + 134802 134972  171  1  0   79   63    55 0.430   1.09
 8.06 Intr + 135206 135417  212  0  2  101   88    60 0.470   5.01
 8.07 Intr + 135708 135883  176  2  2   40   29   136 0.054   0.72
 8.08 Intr + 140309 140442  134  2  2   96   89    58 0.460   6.07
 8.09 Intr + 141331 141573  243  2  0  -18   72   216 0.770   5.95
 8.10 Term + 141651 141763  113  1  2   54   49   141 0.985   4.54
 8.11 PlyA + 142817 142822    6                               1.05

 9.00 Prom + 155177 155216   40                              -2.55
 9.01 Sngl + 164359 164784  426  0  0   93   37   390 0.971  30.44
 9.02 PlyA + 169071 169076    6                               1.05

10.05 PlyA - 170332 170327    6                               1.05
10.04 Term - 177954 177883   72  0  0   84   38    93 0.143   0.83
10.03 Intr - 191529 191410  120  0  0  -31   84   126 0.237   0.07
10.02 Intr - 192031 191906  126  1  0   71    6   194 0.450   9.46
10.01 Init - 193559 193479   81  2  0   97   75    41 0.899   4.72

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  85622  85242  381  2  0   36   41   570 0.934  43.02
S.002 Term - 158774 158660  115  1  1  114   40   117 0.913   6.56


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:27047129_27247512|GENSCAN_predicted_peptide_1|214_aa
XSSRQTHTRLDVKTNTLAEEHTSTWMWRGCREHADRYRQACRPSTDRPNDLEFEGAAPGT
VHQTLLYNGSGSLVDQKEADVSGWELGNDQPPSPWALESSSSTSDRRPQNLLFHCLPLTS
SALDSPLPKPKAAPIHSCQVHSPGESVQHASGWLFWQSSTNQGLFIFPQVPVLMGNSHWC
HNVNVIISDFAKGKGVLLYNVNPWVQLCPLPEAR

>gi568815592f:27047129_27247512|GENSCAN_predicted_CDS_1|645_bp
nactctagcaggcagacacacacgcggctggacgtcaagacaaacacattggcagaggaa
cacacaagcacctggatgtggagagggtgtcgagagcacgctgacaggtaccggcaagcc
tgcaggccatcgaccgaccggccgaacgacttggagtttgaaggggcagctccaggcaca
gtgcatcaaacactgctgtacaatggctctggctcccttgtggaccagaaagaagcagat
gtttctggatgggagttgggaaatgatcagccaccttctccctgggccctggaatcttcc
tcttccacaagtgacagaagacctcagaatcttctctttcactgcctacccctgaccagc
tctgccctggacagtccccttccaaagccaaaggcagccccaatccacagttgtcaggta
cactcacctggggagtctgtgcagcatgcctctgggtggctgttctggcagagcagcacc
aaccagggcctgtttatatttccccaagtcccagtgctcatgggcaactcccactggtgt
cacaatgtcaatgtcataatttctgactttgccaaaggaaaaggggtccttctgtacaat
gtcaatccctgggtacaactctgccctctccctgaggctcgataa

>gi568815592f:27047129_27247512|GENSCAN_predicted_peptide_2|436_aa
MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
KYTSANSGSCSDSCSGLLLLLNTAPALPVCSTGGASTLLYTAILGCSACGLVVLSAASTL
LYTVAVGFSAYGLALLCGAPALLYYAATLGCSMGVSGNFPTALEEKGGGNLKGKVTGLSG
LGRISGFSSPTVTFLSSLLPSPLSQARRRFCSHQLDEPGLAIFPRVNSQPWCYILPWEFH
TFSKRVIMHSVKHAHARAHELPTVFLSGFEKRQTEVGERSCSRINIPVSALRRSPDSVLA
CLDNSTVDVVKNTLDRVICKEKKFILEAGKSKVMGLASGKGFCSASRHGEKATRQENVDE
RGKKKQADWFYNNSLS

>gi568815592f:27047129_27247512|GENSCAN_predicted_CDS_2|1311_bp
atgccagagccagcgaagtctgctcccgccccgaaaaagggctccaagaaggcggtgact
aaggcgcagaagaaagacggcaagaagcgcaagcgcagccgcaaggagagctattccatc
tatgtgtacaaggttctgaagcaggtccaccctgacaccggcatttcgtccaaggccatg
ggcatcatgaattcgtttgtgaacgacattttcgagcgcatcgcaggtgaggcttcccgc
ctggcgcattacaacaagcgctcgaccatcacctccagggagatccagacggccgtgcgc
ctgctgctgcctggggagttggccaagcacgccgtgtccgagggtactaaggccgtcacc
aagtacaccagcgctaattctggctcctgctctgactcctgctctggactgctcctgttg
ctgaacactgctcctgcccttcctgtctgttctactggtggagcatccactttgctgtac
actgctattctgggctgttctgcctgtgggttagttgtgctttctgcagcatccaccttg
ctgtacacagttgctgtaggcttctctgcctatgggttagccttgctttgtggagcaccc
gctttgctgtactatgctgctactctgggatgctctatgggagtcagtggtaatttccct
actgctcttgaagaaaagggaggtggaaatttgaaaggaaaagtaactggactctctgga
cttggaagaatttctgggtttagtagccccaccgtcaccttcctctcctctctattgccc
tctcccctttctcaggctcgaaggcgtttttgcagtcatcagttagacgaacctgggcta
gcaatattcccaagagtcaatagtcagccctggtgctatatacttccatgggaattccat
actttctcaaaacgcgtcatcatgcactcggttaaacacgcacacgcacgcgcgcacgag
ctgcccacggtcttcctttcggggtttgagaagagacagacagaggtgggagagcgcagc
tgcagccgcatcaacattccggtgtctgcccttagaagaagtccggattcagtactcgcc
tgcttagacaattctactgttgatgtggtgaaaaataccttagaccgggtaatttgtaaa
gaaaagaagtttattctggaggctgggaagtccaaggtcatgggactggcttctggcaag
ggtttttgttctgcatcacgacatggtgaaaaagcaacacgacaagagaatgtggatgaa
agagggaaaaagaagcaggctgactggttttataacaactcactctcatga

>gi568815592f:27047129_27247512|GENSCAN_predicted_peptide_3|223_aa
MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
TESHHKAKGKPLLNFKLNQCVSTEHQWLREFLKHFGPKELSPGLEFSRQLFHAGQGGMKK
SRRYVPGTVALRDVRRYQNSELLISKLPLLRELGGDAAARERG

>gi568815592f:27047129_27247512|GENSCAN_predicted_CDS_3|672_bp
atgtctggacgtggcaagcagggaggcaaagcccgcgctaaggccaagactcgctcttct
agggccggtctccagttccccgtgggccgagtgcaccgcctgctccgcaaaggcaactat
gccgagcgggtcggggccggcgcgccggtgtatctggcagcggtgctggagtacctgacc
gccgagatcctggaactggcgggcaacgcggcccgcgacaacaagaagacccgcatcatc
ccgcgtcatctccaactggccatccgcaacgacgaggagctcaacaagctgctgggcaaa
gtcaccatcgcacagggcggtgtcctgcccaacattcaggccgtgctactgcccaaaaag
actgagagccaccacaaggcgaagggcaagccattacttaattttaaacttaatcagtgt
gtgtccacagagcaccagtggcttcgtgagttcttgaagcactttggcccaaaagagtta
tcgcccgggctagaatttagcagacagctgttccacgcgggccagggcggcatgaagaag
tcccgccgctacgtgcccggcacagtggccctgcgcgacgttcggcgctaccagaactcc
gagctgctgatcagcaagctgccgctcctgcgagagctcggcggtgacgccgctgcacga
gagcgaggctga

>gi568815592f:27047129_27247512|GENSCAN_predicted_peptide_4|103_aa
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG

>gi568815592f:27047129_27247512|GENSCAN_predicted_CDS_4|312_bp
atgtcaggacgcggcaaaggaggtaagggcctggggaaagggggtgccaagcgccaccgc
aaggtgctgcgcgacaacatccagggtatcaccaagccagccattcggcgccttgctcgc
cgcggcggcgtgaagcgcatttctggcctcatctatgaggagacccgcggagtgttgaag
gtgttcctggagaacgtgatccgggacgccgtgacctacacggagcacgccaagcgcaag
acggtcaccgccatggacgtggtctacgcgctcaagcgccagggccgcaccctctatggc
ttcggcggctaa

>gi568815592f:27047129_27247512|GENSCAN_predicted_peptide_5|126_aa
MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
KYTSAK

>gi568815592f:27047129_27247512|GENSCAN_predicted_CDS_5|381_bp
atgccggaaccagcgaagtccgctcccgcgcccaagaagggctcgaagaaagccgtgact
aaggcgcagaagaaggacggcaagaagcgcaagcgcagccgcaaggagagctactccgta
tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcctctaaggccatg
ggaatcatgaactccttcgtcaacgacatcttcgaacgcatcgcgggtgaggcttcccgc
ctggcgcattacaacaagcgctcgaccatcacctccagggagatccagacggccgtgcgc
ctgctgctgcccggggagttggccaagcacgccgtgtccgagggcaccaaggccgtcacc
aagtacaccagcgctaagtaa

>gi568815592f:27047129_27247512|GENSCAN_predicted_peptide_6|128_aa
MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
TESHHKAK

>gi568815592f:27047129_27247512|GENSCAN_predicted_CDS_6|387_bp
atgtctggacgtggcaagcaaggcggtaaagctcgcgccaaggccaagacccgctcttct
cgggctgggcttcagttccccgtgggccgagtgcaccgcctgctccgcaagggtaattat
gccgagcgggttggagccggcgcgccagtgtacctggctgcggtgctggagtacctgacc
gctgagatcctggagctggctggcaatgcggcccgcgacaacaagaagacccgtatcatc
ccgcgtcacctccaactggccatccgcaacgacgaggagctcaacaagctgctgggcaaa
gtcaccatcgcgcagggtggtgtcttgcccaatatccaggccgtgctgctgcctaagaag
actgagagccaccataaggccaaataa

>gi568815592f:27047129_27247512|GENSCAN_predicted_peptide_7|191_aa
MLAMLVSNSRPQYVEKLRRRQGTAQYVEKLRRHQGTAVTRIRTEVAAATTQSTNHYTITA
RHQRPLLVGLFLCLFPRNVCFCHLKNGAVFRPYLHTYPVYFLIHSPSPIFCLWQRSQSLA
VWSSDLWQQKEEGAALKWTCQIPFFAKLVRIFGGLAWNLASRQVPENYSLQGMHDNDSIC
NRYEDEGEGRN

>gi568815592f:27047129_27247512|GENSCAN_predicted_CDS_7|576_bp
atgttggccatgctggtctcgaactcccgacctcagtatgttgaaaaattgaggcgacgt
caaggtactgctcagtacgttgagaaattgaggcgacatcaaggtactgccgtgactcgg
attcgaaccgaggttgctgcggccacaacgcagagtactaaccactatacgatcacggca
cgccaccagaggccgctgcttgtggggctcttcctttgcttatttcccagaaacgtctgt
ttttgtcatctaaagaatggtgcagtctttcgtccttatttacacacctacccagtttac
ttccttatccactccccgtccccaatattttgcttatggcaaagaagccaaagtttagca
gtgtggtcctcagatctttggcaacaaaaggaagagggcgctgctttgaagtggacctgc
cagatcccattttttgccaaactagtcagaatcttcgggggcttggcatggaatctggca
tctcgacaggtgccagaaaattattccttacaaggaatgcatgacaacgactccatctgt
aataggtatgaagatgagggggaagggcggaactga

>gi568815592f:27047129_27247512|GENSCAN_predicted_peptide_8|650_aa
MDRRGYGVRCKTEVYKRGEGLRTNQKAAPSLRSRPVPHGTNRRAAAGSQDRRVRRTRRVR
IPLCSLRPFQPGILFLGEERTMICKAAMIAWERKHPPRQNVLAAEHKFPAQDPQWDNNSA
AHRENMRDRDMIIKGIQESVPPTQNISQAFNVQQEKDEGPMEFLNRLKEQIRKYADLSCS
AEDLTVSGVKGEGFRAKILEETEVKYKNKSVATKFFLIPEAGTNLLGRDLMLRLGTGLYV
NQGKLLTSLNVLTTSEESRIHPNVWSKEGNRGWVPPIHVKLKTPGEIVKQKQYPIPLEAR
IGDNKDQVTAISVNFLNFLRGQGLRVSKNNIQFIESEVKYLGHLISKGERKIGSERIEEQ
PFHLFINVSKGVALGVLTQKHGGHRQPVVFLSKILDPVTRGWPECVQSIAATALLTEESR
KITFGGNLFVIEGKRHNGYSIVDRETLTVVESERLPNKWSAQICELFALNQALKSLQNQE
GTIYTYSNFPNPERLSSADPTGCQLFGLLDILLKIHWEKGLWGHKLAIKIWEIWSLVRAA
LEPFQTNDEAESEEEKEEFDNQDSETPLPSTSQKESPEVIYANPPSLPKPIQKLIQLRVP
QEECPEWPPPPQPIHYGEGVIQVRPAVHYSEGAISLKMDDPAPCLGRTVA

>gi568815592f:27047129_27247512|GENSCAN_predicted_CDS_8|1953_bp
atggataggcgaggctacggagttcgatgtaaaaccgaagtttacaagcgaggtgaagga
ctcagaacaaaccaaaaagcagctccaagcttgcgatcgcggccagttcctcacggaacc
aaccgcagagccgccgcaggttcgcaggatcggagggttcggaggactcggagggtgcgg
attcctctctgctccttgagaccattccagccaggtattctcttcttaggagaggaaaga
accatgatctgcaaggctgctatgatagcctgggagcgcaagcacccccctcgtcagaat
gtccttgcagcagagcataaattcccggcccaggaccctcaatgggataacaacagtgcg
gctcaccgggaaaacatgagagatagggatatgataattaaagggattcaggaatcagtt
cctccaacccaaaacatttcccaagcatttaatgtacagcaagagaaagatgaagggccc
atggaattcttaaacagacttaaggaacagataagaaaatacgcagatttatcctgttca
gccgaagaccttactgtctcaggagttaaaggggaaggattcagagcaaaaattctagag
gaaaccgaagtcaaatataagaataagtcggttgctactaagttcttcttaattcctgaa
gcaggaactaatttattaggaagggacttaatgttaaggttaggcacaggcctatatgtt
aatcaaggaaaactccttacttccttaaacgtactcaccacttcagaagaaagccgcatc
catcccaacgtatggtcgaaagaagggaatcgaggatgggttcctccaatccatgtcaaa
ttaaaaactcctggggaaatagtgaaacaaaaacaataccctattcccttggaagccagg
ataggagataacaaggatcaagtaacagcaatttcagttaacttcctaaatttcctaagg
ggacaaggattacgggtctcaaagaacaacatccaattcatagaatctgaggtaaaatat
ctaggacacctaatcagtaaaggtgaacgaaagataggatccgaacgaattgaagaacag
ccattccatcttttcattaatgtaagcaaaggagtggccttaggggtactcacccaaaaa
catggaggccaccggcagcctgtagtctttctgtcaaaaatccttgacccagtaacccgt
ggatggcccgaatgtgttcaatccatagcagcaactgccttgctaacagaagaaagcagg
aaaataacctttgggggaaacctcttcgtcattgaaggaaaaaggcacaacgggtactcc
atagttgatagggaaaccctcacagtggtagagtcagaaagactgccaaataagtggtct
gcccaaatatgtgaactctttgcattaaaccaagccttaaaatccctgcagaatcaggaa
ggaactatttacacttactccaactttccaaaccctgagagattgagctctgctgaccca
acagggtgtcagctgtttgggttgctggacattctcttgaagatacattgggaaaaaggc
ttatggggccataaactggcaataaaaatatgggagatttggtcattggtgcgtgccgca
ctggagccatttcagacaaatgatgaggctgagtcagaggaggagaaggaggagtttgat
aatcaggactctgaaacgcctctaccgagtactagccaaaaggagagtccggaagtaatt
tatgccaatccccccagtcttcctaaacctattcagaaactcattcagctcagggttcct
caagaggaatgtccggaatggccacctcctcctcagccgattcattatggagagggggta
attcaggttcgccctgcagttcattacagtgaaggagcaatttcccttaaaatggatgac
ccagcgccctgtctgggtcgaacagtggcctaa

>gi568815592f:27047129_27247512|GENSCAN_predicted_peptide_9|141_aa
MAFISECGCTPSTSSASTGCCPVLGLTGSKQVWEVPLESPQGTVARILIGQVIMSIRTKL
QNKEHVIEALRRVKFKFPGRQKVHISKKGGFTKFDADEFEDMVAEKQLIPDGCGIKYIPD
RGPLDKGGLCIHEGFHCAASS

>gi568815592f:27047129_27247512|GENSCAN_predicted_CDS_9|426_bp
atggctttcatatccgagtgcggctgcaccccttccacgtcatctgcatcaacaggatgt
tgtcctgtgctgggactgacaggctccaaacaggtatgggaggtgcctttggaaagcccg
cagggcactgtggccaggattctcattggccaagttatcatgtccattcgcaccaagctg
cagaacaaggagcatgtgattgaggcccttcgcagggtcaagttcaagttccctggccgc
cagaaggtccacatttcaaagaaggggggcttcaccaagttcgatgcagatgaatttgaa
gacatggtggctgagaagcagctcatcccagatggctgtgggatcaagtacatccccgat
cgtggccctctggacaagggagggctttgcattcatgagggcttccactgtgctgcctcc
tcttaa

>gi568815592f:27047129_27247512|GENSCAN_predicted_peptide_10|132_aa
MAPLRYHQPPYRFFSKIDLSENTPDIKIFSRVMEASVIVFVLKIEIRETSKWPENLEHSL
VDTIVTPEMRRELGEKRYAQSPLLENGDLRAVIKGQLSPPSSHSTTNEEDYDLRVDWKLI
SGNLPNPLTDPY

>gi568815592f:27047129_27247512|GENSCAN_predicted_CDS_10|399_bp
atggcaccactgcgctatcatcaaccaccatatagatttttttctaaaattgatctgtct
gagaacactcctgatatcaagatattcagcagggtcatggaggctagcgttatcgtcttt
gtcctcaaaatagaaatccgagaaacctccaagtggcccgaaaatttagagcactcgctc
gtggataccattgtcactccagaaatgcggcgggaactgggagagaaaaggtatgcacaa
agtcctttgttggagaacggagacctccgagctgttattaaaggacagctttctccacca
tcttcccattccaccaccaatgaggaggactatgatctccgggttgactggaagttgatt
tctggaaatctgcccaaccctcttactgatccttactga