Result of FASTA (omim) for pF1KB7788
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7788, 514 aa
  1>>>pF1KB7788 514 - 514 aa - 514 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3811+/-0.000311; mu= 13.6437+/- 0.020
 mean_var=98.9269+/-20.012, 0's: 0 Z-trim(118.3): 176  B-trim: 0 in 0/53
 Lambda= 0.128949
 statistics sampled from 30928 (31107) to 30928 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.365), width:  16
 Scan time:  8.820

The best scores are:                                      opt bits E(85289)
XP_005250323 (OMIM: 616714) PREDICTED: HMG box-con ( 514) 3579 676.2 6.4e-194
NP_036389 (OMIM: 616714) HMG box-containing protei ( 514) 3579 676.2 6.4e-194
XP_016867456 (OMIM: 616714) PREDICTED: HMG box-con ( 514) 3579 676.2 6.4e-194
XP_005250324 (OMIM: 616714) PREDICTED: HMG box-con ( 514) 3579 676.2 6.4e-194
NP_001231191 (OMIM: 616714) HMG box-containing pro ( 524) 3579 676.2 6.5e-194
XP_005258732 (OMIM: 612082) PREDICTED: protein cap (1605)  217 51.0 3.1e-05
XP_005258731 (OMIM: 612082) PREDICTED: protein cap (1606)  217 51.0 3.1e-05
XP_005258730 (OMIM: 612082) PREDICTED: protein cap (1606)  217 51.0 3.1e-05
NP_055940 (OMIM: 612082) protein capicua homolog i (1608)  217 51.0 3.1e-05
XP_011524969 (OMIM: 612082) PREDICTED: protein cap (2002)  217 51.1 3.7e-05
XP_011524968 (OMIM: 612082) PREDICTED: protein cap (2514)  217 51.1 4.5e-05
XP_011524967 (OMIM: 612082) PREDICTED: protein cap (2515)  217 51.1 4.5e-05
XP_011524966 (OMIM: 612082) PREDICTED: protein cap (2515)  217 51.1 4.5e-05
XP_011524964 (OMIM: 612082) PREDICTED: protein cap (2516)  217 51.1 4.5e-05
XP_011524963 (OMIM: 612082) PREDICTED: protein cap (2516)  217 51.1 4.5e-05
XP_011524965 (OMIM: 612082) PREDICTED: protein cap (2516)  217 51.1 4.5e-05
NP_001291744 (OMIM: 612082) protein capicua homolo (2517)  217 51.1 4.5e-05
XP_011524962 (OMIM: 612082) PREDICTED: protein cap (2517)  217 51.1 4.5e-05
NP_821078 (OMIM: 604975,616803) transcription fact ( 377)  196 46.7 0.00014
NP_055402 (OMIM: 605923) transcription factor SOX- ( 446)  197 47.0 0.00014
XP_011519144 (OMIM: 604975,616803) PREDICTED: tran ( 415)  196 46.8 0.00015
NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapi ( 233)  191 45.7 0.00018
NP_001248343 (OMIM: 604975,616803) transcription f ( 642)  196 46.9 0.00022
XP_016875388 (OMIM: 604975,616803) PREDICTED: tran ( 715)  196 46.9 0.00024
XP_016875389 (OMIM: 604975,616803) PREDICTED: tran ( 715)  196 46.9 0.00024
XP_016875387 (OMIM: 604975,616803) PREDICTED: tran ( 715)  196 46.9 0.00024
XP_016875390 (OMIM: 604975,616803) PREDICTED: tran ( 715)  196 46.9 0.00024
XP_016875386 (OMIM: 604975,616803) PREDICTED: tran ( 716)  196 46.9 0.00024
NP_001317714 (OMIM: 604975,616803) transcription f ( 728)  196 46.9 0.00024
XP_011519140 (OMIM: 604975,616803) PREDICTED: tran ( 729)  196 46.9 0.00024
NP_694534 (OMIM: 604975,616803) transcription fact ( 750)  196 46.9 0.00025
XP_016875385 (OMIM: 604975,616803) PREDICTED: tran ( 750)  196 46.9 0.00025
XP_011519139 (OMIM: 604975,616803) PREDICTED: tran ( 751)  196 46.9 0.00025
XP_016875382 (OMIM: 604975,616803) PREDICTED: tran ( 751)  196 46.9 0.00025
XP_016875379 (OMIM: 604975,616803) PREDICTED: tran ( 751)  196 46.9 0.00025
XP_011519137 (OMIM: 604975,616803) PREDICTED: tran ( 751)  196 46.9 0.00025
XP_016875383 (OMIM: 604975,616803) PREDICTED: tran ( 751)  196 46.9 0.00025
XP_016875381 (OMIM: 604975,616803) PREDICTED: tran ( 751)  196 46.9 0.00025
XP_016875380 (OMIM: 604975,616803) PREDICTED: tran ( 751)  196 46.9 0.00025
XP_016875384 (OMIM: 604975,616803) PREDICTED: tran ( 751)  196 46.9 0.00025
XP_011519136 (OMIM: 604975,616803) PREDICTED: tran ( 751)  196 46.9 0.00025
NP_001248344 (OMIM: 604975,616803) transcription f ( 753)  196 46.9 0.00025
XP_011519135 (OMIM: 604975,616803) PREDICTED: tran ( 754)  196 46.9 0.00025
NP_008871 (OMIM: 604975,616803) transcription fact ( 763)  196 46.9 0.00025
XP_011519134 (OMIM: 604975,616803) PREDICTED: tran ( 764)  196 46.9 0.00025
XP_016875378 (OMIM: 604975,616803) PREDICTED: tran ( 792)  196 46.9 0.00026
XP_016875377 (OMIM: 604975,616803) PREDICTED: tran ( 793)  196 46.9 0.00026
NP_003097 (OMIM: 184429,189960,206900) transcripti ( 317)  190 45.6 0.00027
XP_005245680 (OMIM: 604748) PREDICTED: transcripti ( 621)  193 46.3 0.00031
NP_005677 (OMIM: 604748) transcription factor SOX- ( 622)  193 46.3 0.00031


>>XP_005250323 (OMIM: 616714) PREDICTED: HMG box-contain  (514 aa)
 initn: 3579 init1: 3579 opt: 3579  Z-score: 3602.5  bits: 676.2 E(85289): 6.4e-194
Smith-Waterman score: 3579; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KB7 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
              430       440       450       460       470       480

              490       500       510    
pF1KB7 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
       ::::::::::::::::::::::::::::::::::
XP_005 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
              490       500       510    

>>NP_036389 (OMIM: 616714) HMG box-containing protein 1   (514 aa)
 initn: 3579 init1: 3579 opt: 3579  Z-score: 3602.5  bits: 676.2 E(85289): 6.4e-194
Smith-Waterman score: 3579; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KB7 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
              430       440       450       460       470       480

              490       500       510    
pF1KB7 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
       ::::::::::::::::::::::::::::::::::
NP_036 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
              490       500       510    

>>XP_016867456 (OMIM: 616714) PREDICTED: HMG box-contain  (514 aa)
 initn: 3579 init1: 3579 opt: 3579  Z-score: 3602.5  bits: 676.2 E(85289): 6.4e-194
Smith-Waterman score: 3579; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KB7 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
              430       440       450       460       470       480

              490       500       510    
pF1KB7 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
       ::::::::::::::::::::::::::::::::::
XP_016 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
              490       500       510    

>>XP_005250324 (OMIM: 616714) PREDICTED: HMG box-contain  (514 aa)
 initn: 3579 init1: 3579 opt: 3579  Z-score: 3602.5  bits: 676.2 E(85289): 6.4e-194
Smith-Waterman score: 3579; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KB7 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
              430       440       450       460       470       480

              490       500       510    
pF1KB7 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
       ::::::::::::::::::::::::::::::::::
XP_005 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
              490       500       510    

>>NP_001231191 (OMIM: 616714) HMG box-containing protein  (524 aa)
 initn: 3579 init1: 3579 opt: 3579  Z-score: 3602.3  bits: 676.2 E(85289): 6.5e-194
Smith-Waterman score: 3579; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:11-524)

                         10        20        30        40        50
pF1KB7           MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSC
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSC
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB7 DEHMELDDLPELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEHMELDDLPELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDW
               70        80        90       100       110       120

              120       130       140       150       160       170
pF1KB7 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHW
              130       140       150       160       170       180

              180       190       200       210       220       230
pF1KB7 KEETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKE
              190       200       210       220       230       240

              240       250       260       270       280       290
pF1KB7 WQDVEDFARAEGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WQDVEDFARAEGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDG
              250       260       270       280       290       300

              300       310       320       330       340       350
pF1KB7 LLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGV
              310       320       330       340       350       360

              360       370       380       390       400       410
pF1KB7 FDTFKSYDFTPMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDTFKSYDFTPMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSS
              370       380       390       400       410       420

              420       430       440       450       460       470
pF1KB7 NSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGD
              430       440       450       460       470       480

              480       490       500       510    
pF1KB7 RWKKMKNEERRMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWKKMKNEERRMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
              490       500       510       520    

>>XP_005258732 (OMIM: 612082) PREDICTED: protein capicua  (1605 aa)
 initn: 214 init1: 182 opt: 217  Z-score: 215.0  bits: 51.0 E(85289): 3.1e-05
Smith-Waterman score: 217; 35.9% identity (62.4% similar) in 117 aa overlap (403-509:166-279)

            380       390       400       410       420       430  
pF1KB7 MARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPN
                                     ::. .  ..:: :   .  ::.  .. :::
XP_005 GEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRR--TQSLSALPKERDSSSEKDGRSPN
         140       150       160       170         180       190   

                 440       450       460       470       480       
pF1KB7 K-----CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA
       :      .:::::::.:.:..:.   : .:..:::..: :::. :  .  .:.. :   :
XP_005 KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLA
           200       210       220       230       240       250   

       490       500            510                                
pF1KB7 KALAEEQKRLNPDCWK-----RKRTNSGSQQH                            
         . : . . .:: ::     ::...:                                 
XP_005 FQVKEAHFKAHPD-WKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVS
           260        270       280       290       300       310  

>>XP_005258731 (OMIM: 612082) PREDICTED: protein capicua  (1606 aa)
 initn: 214 init1: 182 opt: 217  Z-score: 215.0  bits: 51.0 E(85289): 3.1e-05
Smith-Waterman score: 217; 35.9% identity (62.4% similar) in 117 aa overlap (403-509:166-279)

            380       390       400       410       420       430  
pF1KB7 MARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPN
                                     ::. .  ..:: :   .  ::.  .. :::
XP_005 GEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRR--TQSLSALPKERDSSSEKDGRSPN
         140       150       160       170         180       190   

                 440       450       460       470       480       
pF1KB7 K-----CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA
       :      .:::::::.:.:..:.   : .:..:::..: :::. :  .  .:.. :   :
XP_005 KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLA
           200       210       220       230       240       250   

       490       500            510                                
pF1KB7 KALAEEQKRLNPDCWK-----RKRTNSGSQQH                            
         . : . . .:: ::     ::...:                                 
XP_005 FQVKEAHFKAHPD-WKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVS
           260        270       280       290       300       310  

>>XP_005258730 (OMIM: 612082) PREDICTED: protein capicua  (1606 aa)
 initn: 214 init1: 182 opt: 217  Z-score: 215.0  bits: 51.0 E(85289): 3.1e-05
Smith-Waterman score: 217; 35.9% identity (62.4% similar) in 117 aa overlap (403-509:166-279)

            380       390       400       410       420       430  
pF1KB7 MARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPN
                                     ::. .  ..:: :   .  ::.  .. :::
XP_005 GEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRR--TQSLSALPKERDSSSEKDGRSPN
         140       150       160       170         180       190   

                 440       450       460       470       480       
pF1KB7 K-----CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA
       :      .:::::::.:.:..:.   : .:..:::..: :::. :  .  .:.. :   :
XP_005 KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLA
           200       210       220       230       240       250   

       490       500            510                                
pF1KB7 KALAEEQKRLNPDCWK-----RKRTNSGSQQH                            
         . : . . .:: ::     ::...:                                 
XP_005 FQVKEAHFKAHPD-WKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVS
           260        270       280       290       300       310  

>>NP_055940 (OMIM: 612082) protein capicua homolog isofo  (1608 aa)
 initn: 214 init1: 182 opt: 217  Z-score: 215.0  bits: 51.0 E(85289): 3.1e-05
Smith-Waterman score: 217; 35.9% identity (62.4% similar) in 117 aa overlap (403-509:166-279)

            380       390       400       410       420       430  
pF1KB7 MARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPN
                                     ::. .  ..:: :   .  ::.  .. :::
NP_055 GEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRR--TQSLSALPKERDSSSEKDGRSPN
         140       150       160       170         180       190   

                 440       450       460       470       480       
pF1KB7 K-----CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA
       :      .:::::::.:.:..:.   : .:..:::..: :::. :  .  .:.. :   :
NP_055 KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLA
           200       210       220       230       240       250   

       490       500            510                                
pF1KB7 KALAEEQKRLNPDCWK-----RKRTNSGSQQH                            
         . : . . .:: ::     ::...:                                 
NP_055 FQVKEAHFKAHPD-WKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVS
           260        270       280       290       300       310  

>>XP_011524969 (OMIM: 612082) PREDICTED: protein capicua  (2002 aa)
 initn: 214 init1: 182 opt: 217  Z-score: 213.5  bits: 51.1 E(85289): 3.7e-05
Smith-Waterman score: 217; 35.9% identity (62.4% similar) in 117 aa overlap (403-509:1075-1188)

            380       390       400       410       420       430  
pF1KB7 MARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPN
                                     ::. .  ..:: :   .  ::.  .. :::
XP_011 GEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRR--TQSLSALPKERDSSSEKDGRSPN
         1050      1060      1070        1080      1090      1100  

                 440       450       460       470       480       
pF1KB7 K-----CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA
       :      .:::::::.:.:..:.   : .:..:::..: :::. :  .  .:.. :   :
XP_011 KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLA
           1110      1120      1130      1140      1150      1160  

       490       500            510                                
pF1KB7 KALAEEQKRLNPDCWK-----RKRTNSGSQQH                            
         . : . . .:: ::     ::...:                                 
XP_011 FQVKEAHFKAHPD-WKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVS
           1170       1180      1190      1200      1210      1220 




514 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:18:26 2016 done: Fri Nov  4 22:18:28 2016
 Total Scan time:  8.820 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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