FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6795, 128 aa
  1>>>pF1KB6795 128 - 128 aa - 128 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3890+/-0.000689; mu= 11.2993+/- 0.042
 mean_var=75.1326+/-14.833, 0's: 0 Z-trim(111.1): 40  B-trim: 674 in 1/49
 Lambda= 0.147965
 statistics sampled from 12073 (12113) to 12073 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.372), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS2136.1 GYPC gene_id:2995|Hs108|chr2            ( 128)  846 188.9 7.5e-49
CCDS58724.1 GYPC gene_id:2995|Hs108|chr2           ( 107)  688 155.1 9.2e-39
CCDS46402.1 GYPC gene_id:2995|Hs108|chr2           ( 109)  609 138.2 1.1e-33
CCDS5889.1 CNTNAP2 gene_id:26047|Hs108|chr7        (1331)  269 66.4 5.8e-11


>>CCDS2136.1 GYPC gene_id:2995|Hs108|chr2                 (128 aa)
 initn: 846 init1: 846 opt: 846  Z-score: 990.5  bits: 188.9 E(32554): 7.5e-49
Smith-Waterman score: 846; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
               70        80        90       100       110       120

               
pF1KB6 SSRKEYFI
       ::::::::
CCDS21 SSRKEYFI
               

>>CCDS58724.1 GYPC gene_id:2995|Hs108|chr2                (107 aa)
 initn: 688 init1: 688 opt: 688  Z-score: 809.4  bits: 155.1 E(32554): 9.2e-39
Smith-Waterman score: 688; 100.0% identity (100.0% similar) in 107 aa overlap (22-128:1-107)

               10        20        30        40        50        60
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
                            :::::::::::::::::::::::::::::::::::::::
CCDS58                      MASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
                                    10        20        30         

               70        80        90       100       110       120
pF1KB6 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
      40        50        60        70        80        90         

               
pF1KB6 SSRKEYFI
       ::::::::
CCDS58 SSRKEYFI
     100       

>>CCDS46402.1 GYPC gene_id:2995|Hs108|chr2                (109 aa)
 initn: 609 init1: 609 opt: 609  Z-score: 718.1  bits: 138.2 E(32554): 1.1e-33
Smith-Waterman score: 677; 85.2% identity (85.2% similar) in 128 aa overlap (1-128:1-109)

               10        20        30        40        50        60
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
       ::::::::::::::::::::::                   :::::::::::::::::::
CCDS46 MWSTRSPNSTAWPLSLEPDPGM-------------------SGWPDGRMETSTPTIMDIV
               10        20                           30        40 

               70        80        90       100       110       120
pF1KB6 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
              50        60        70        80        90       100 

               
pF1KB6 SSRKEYFI
       ::::::::
CCDS46 SSRKEYFI
               

>>CCDS5889.1 CNTNAP2 gene_id:26047|Hs108|chr7             (1331 aa)
 initn: 230 init1: 199 opt: 269  Z-score: 310.3  bits: 66.4 E(32554): 5.8e-11
Smith-Waterman score: 269; 40.2% identity (65.6% similar) in 122 aa overlap (8-128:1213-1331)

                                      10        20        30       
pF1KB6                        MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEP
                                     :  : ::.: :   :.::.   :   .   
CCDS58 QFNQIAPLKAALRQTNASAHVHIQGELVESNCGASPLTLSP---MSSATDPWHLDHLDSA
           1190      1200      1210      1220         1230         

        40        50        60        70        80        90       
pF1KB6 DPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAK
       .  .   :   .   . .  . ..:.::::.: ....  :  ..:::.::::::::::::
CCDS58 SADFPYNPGQGQAIRNGVNRNSAIIGGVIAVVIFTILCTLVFLIRYMFRHKGTYHTNEAK
    1240      1250      1260      1270      1280      1290         

       100        110       120        
pF1KB6 GTEFAESADAA-LQGDPALQDAGDSSRKEYFI
       :.: ::::::: ...:: . .. : :.::..:
CCDS58 GAESAESADAAIMNNDPNFTETIDESKKEWLI
    1300      1310      1320      1330 




128 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:02:08 2016 done: Sat Nov  5 00:02:08 2016
 Total Scan time:  1.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]