GENSCAN 1.0	Date run:  5-Nov-116	Time: 00:02:35

Sequence gi568815596f:126556264_126796139 : 239876 bp : 43.91% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -    190    185    6                               1.05
 1.03 Term -   1935   1366  570  0  0   77   50   427 0.941  32.24
 1.02 Intr -   9912   9865   48  0  0  124   93   -20 0.362   0.98
 1.01 Init -  20286  20194   93  0  0   51  100    35 0.003   1.38
 1.00 Prom -  41453  41414   40                              -2.16

 2.00 Prom +  50734  50773   40                               0.24
 2.01 Init +  67663  67745   83  0  2   79   94    31 0.404   3.24
 2.02 Intr +  81903  82030  128  0  2   64   63    71 0.034   2.52
 2.03 Intr +  87315  87388   74  1  2  117   59    22 0.629   1.33
 2.04 Term +  87946  88011   66  0  0   94   51    58 0.614   0.64
 2.05 PlyA +  88954  88959    6                               1.05

 3.00 Prom +  89574  89613   40                              -3.76
 3.01 Init +  99820 100049  230  0  2   26  109   152 0.213   6.94
 3.02 Intr + 108513 108666  154  0  1  112   45    45 0.119   2.67
 3.03 Intr + 119369 119486  118  1  1   47  109    36 0.015   1.64
 3.04 Intr + 133992 134048   57  1  0  126  109    35 0.705   8.26
 3.05 Intr + 137601 137684   84  1  0  126   99    82 0.965  12.89
 3.06 Term + 139683 139879  197  1  2  145   55   353 0.980  35.27
 3.07 PlyA + 140383 140388    6                               1.05

 4.07 PlyA - 143385 143380    6                               1.05
 4.06 Term - 164109 164035   75  0  0   64   51    59 0.039  -2.36
 4.05 Intr - 166348 166245  104  2  2   67  105    56 0.042   5.09
 4.04 Intr - 176911 176790  122  0  2   64   11   109 0.216   0.94
 4.03 Intr - 180147 180044  104  0  2   84   71   117 0.447   8.57
 4.02 Intr - 185502 185444   59  1  2   18   97    32 0.123  -4.30
 4.01 Init - 186259 186211   49  1  1   86   89    40 0.365   3.01
 4.00 Prom - 189438 189399   40                              -5.26

 5.00 Prom + 193679 193718   40                              -3.66
 5.01 Init + 196865 196930   66  1  0   73  103    28 0.579   2.19
 5.02 Intr + 197429 197553  125  1  2  137   72    57 0.623   8.38
 5.03 Intr + 203712 203800   89  0  2   81   81     3 0.194  -1.49
 5.04 Intr + 203853 204103  251  1  2    4  105   164 0.442   6.86
 5.05 Intr + 209458 209646  189  0  0   25   87    73 0.599   0.68
 5.06 Intr + 210807 211080  274  2  1  119   44   151 0.699  10.91
 5.07 Intr + 218560 218619   60  2  0   82   75    45 0.417   1.31
 5.08 Intr + 222194 222293  100  0  1   60   62    89 0.384   2.67
 5.09 Intr + 226574 226661   88  2  1   73   42    56 0.036  -0.53
 5.10 Term + 238061 238261  201  1  0   97   32   140 0.376   6.69
 5.11 PlyA + 238288 238293    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  14889  15031  143  0  2  130   76    70 0.877  10.00
S.002 Term +  52814  52921  108  1  0   80   54    83 0.835   2.61
S.003 Intr - 128460 128353  108  0  0   94  106    83 0.963  11.18


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:126556264_126796139|GENSCAN_predicted_peptide_1|236_aa
MHLKPEAFLEPPPACKYPGSRVGMIKHALNKCCPGLLKSKFYHLALLPPPTPDTEHPVTD
KNELVQKAKLAEQAEQYDDMAACMKSVTKQGAELSNEERNLLSVAYKNVVGARKSSWRVV
SSIEQKTEGAEKKQQMAREHREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMK
GDYYRYLTEVTAGDDKIGIVDQSQQAYQEAFEISKKEMQPTHPVRLGLALNFCVLL

>gi568815596f:126556264_126796139|GENSCAN_predicted_CDS_1|711_bp
atgcatctgaagcctgaagccttccttgagcctcctccagcctgcaagtaccctggcagc
agagtaggaatgataaaacatgctctaaacaagtgctgcccaggcctgttgaaaagcaaa
ttttatcacttggcgcttctgccaccacccactccggacacagaacatccagtcacggat
aaaaatgagctggttcagaaggccaaactggccgagcaggctgagcaatatgatgacatg
gcagcctgcatgaagtctgtaactaagcaaggagctgaattatccaatgaggagaggaat
cttctctcagttgcttataaaaatgttgtaggagcccgtaagtcatcttggagggtcgtc
tcaagtattgaacaaaaaacggaaggtgctgagaaaaaacagcagatggctcgagaacac
agagagaaaattgagacggagctaagagatatctgtaatgatgtattgtctcttttggaa
aagttcttgatccccaatgcttcacaagcagagagcaaagtcttctatttgaaaatgaaa
ggagattactaccgttacttgactgaggttactgctggtgatgacaagatagggattgtg
gatcagtcacaacaagcataccaagaagcttttgaaatcagcaaaaaagaaatgcaacca
acacatcctgtcagattgggtctggcccttaacttctgtgttctattatga

>gi568815596f:126556264_126796139|GENSCAN_predicted_peptide_2|116_aa
MKLQSSTFQKYIGSVQKSGKNSKWQQERGPMRRRKWSVLANMPRNCEIRLRFMWILKGKR
CAGEKSTKLQGVQHESPPCSCAVAPGVHGDMGMWERCPLGSFQKGAILDAERSTLE

>gi568815596f:126556264_126796139|GENSCAN_predicted_CDS_2|351_bp
atgaaacttcaatcaagtacatttcagaaatacattggttcagtccagaaaagtgggaaa
aattcaaagtggcagcaggagagggggcctatgagacggaggaaatggtcggtgctggcg
aacatgccaaggaactgtgaaatcagactaaggtttatgtggatcctgaaaggcaaacgt
tgtgctggagagaaaagcacgaagctgcaaggtgtccagcatgaatcacccccatgcagc
tgtgccgtggcaccaggagtccatggggacatggggatgtgggagagatgcccattagga
agcttccagaagggggccattctggatgctgaaagatctacccttgaatga

>gi568815596f:126556264_126796139|GENSCAN_predicted_peptide_3|279_aa
MKSAYLRARAPPLGPRGRSVTQVPLPLAAEGQEPGSATLPRPGLARPGQSPRSLPGLTPR
NVVDEKPQQHGVASQPRALILLYVGSPGSLAVLSVTGGLPGLGICRGSLYLSLWDFTNTA
GVDAREAQRIPFSMTSSPVVAVRHYPRKRRLLSLIFRILHCPFLTQAEPDPGMASASTTM
HTTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKG
TYHTNEAKGTEFAESADAALQGDPALQDAGDSSRKEYFI

>gi568815596f:126556264_126796139|GENSCAN_predicted_CDS_3|840_bp
atgaagtctgcctatctccgggccagagcccctcccctcggcccgcgcgggaggagtgtg
acccaggtgccgcttcctctcgccgccgagggtcaggagcccgggagcgcgaccctcccc
cggcccggcctggcccggcctggccagtccccgcggtctctgcccgggctgacgcccagg
aatgtggtcgacgagaagccccaacagcacggcgtggcctctcagcctcgggctctgatc
ctcctctacgttggcagtcctggttccttagcagttctgtctgtcacgggaggactccct
gggctgggcatctgcaggggcagcctctacctctccctgtgggacttcactaacacagct
ggagtagatgctagggaggctcagagaatccccttctctatgacctcttcacctgtcgtg
gctgttcgtcactacccgagaaaacgcagacttcttagtctgatcttcaggatccttcat
tgccctttcctcacccaagcagagcctgatccggggatggcctctgcctccaccacaatg
catactaccaccattgcagagcctgatccagggatgtctggatggccggatggcagaatg
gagacctccacccccaccataatggacattgtcgtcattgcaggtgtgattgctgctgtg
gccatcgtcctagtctccctcctcttcgtcatgctgcgctacatgtaccggcacaagggc
acgtaccacaccaatgaggccaagggcacggagtttgctgagagtgcagatgcagccctg
cagggagaccctgccctccaagatgctggtgatagcagcagaaaggagtactttatttga

>gi568815596f:126556264_126796139|GENSCAN_predicted_peptide_4|170_aa
MGFHHVGQAGLELLTSVFGHYEQSCYKHSQAGFYVIVIADSWKAYAVMVVVVVVVIVARR
TALHRHADNSGSPLQDLQSRMSALGAPRLQGLLEVLAASSLKVFLLLPGPAGAWMQRHLH
PASQPDSGNPQGIIGPLNVWSTEEEKAHAGIYFPQVDMLKLTSMDPDSGV

>gi568815596f:126556264_126796139|GENSCAN_predicted_CDS_4|513_bp
atggggtttcaccatgtgggccaggctggtctcgaactcctgacctcagtttttggtcat
tatgaacaaagctgctataaacattcacaagcaggcttttatgtcatcgtcatagcagat
tcatggaaggcatatgcggtcatggtggtagtggtggttgtggtcattgtggcgaggagg
actgcccttcacagacatgcagacaacagtgggagtcccctccaggacctgcagagccgt
atgtctgccctgggtgctccacgtctgcagggcctcttggaggtgctggctgcttcatct
ttgaaagtcttcctcctccttcctggacctgctggagcatggatgcagaggcatctgcat
cctgcttcacagccagactcggggaatccccagggaatcattggaccactgaatgtctgg
tccactgaggaagagaaggctcacgctggcatttatttcccccaagtggacatgctgaag
ctgacctctatggatcctgattcgggggtctga

>gi568815596f:126556264_126796139|GENSCAN_predicted_peptide_5|480_aa
MGQALGSTAGKQGAQACSAGPQVRSPDFHLELLKMRRQLQALLWRKRQLPGVSRIFASSL
TPAGSGVHHCHRHTQQQAESLHWSPGLWSEGYDVNQNQFHTPGEKDLEYAGVVIPTTSPF
NVPIRPVQKTDGSWRMTVDYHKLNQVATPIVAAVPDVASFLRQINTSPGTCSAAIDLLIS
WQQLGVPFNIRHHRTGTKQTGNGHGIKELVLLGQLLFTHLGRRQYISKIFLYEIITQCEI
DPLGFAGLPDVDPWTLQSSAPCSSERSDVTALGGSIGGVPSAVIHMGILGLCPTPEEDTA
SQRGVCEDPQPQCLCQEQPPIAGPRASSFYAGCHVSEPKADGTSKPLVVGAALFPTTTRT
SNRHIPSVLGVWHIRGAQDVAEEQRVWLKFAKAVVPTPHQLLRATHYPSIGAVIGREAGT
GRGQDENSPTCLLLRSSHLGSAATSEQGNSDLRDYTALPGTGARGEIATALITRQSIDIP

>gi568815596f:126556264_126796139|GENSCAN_predicted_CDS_5|1443_bp
atgggccaggcacttgggagcacagcaggtaagcaaggagcccaggcctgcagcgcggga
ccccaggtgcgcagccctgactttcacctggagcttctgaagatgcggcgccagctgcaa
gcccttctctggaggaagaggcagcttccgggtgtctccaggatatttgcctcaagcctc
acacctgctggttctggagttcatcattgccacagacatactcagcagcaggcagaatcc
ctgcattggtcccctggtctgtggagtgagggctatgatgtaaaccaaaatcaattccac
actcctggagagaaggacttggaatatgcaggggtggtgattcccaccacatccccattc
aacgtgcccatccggcctgtgcagaagacagatggatcttggagaatgacagtggattat
cataagcttaaccaggtggcgactccaattgtagctgctgttccagatgtggcttcgttt
cttagacaaattaacacatcccctggtacctgctctgcagccattgatctgctgatcagc
tggcagcagctaggagttccattcaacatcaggcatcacagaacagggacaaagcaaact
ggcaatggccatggcatcaaggagttggtcctgctgggtcaactcctgttcactcacctg
ggaagaaggcagtacatttcaaaaatatttctatatgaaattattacacagtgtgagatt
gatcctctaggcttcgctggcctccctgatgtggatccctggactctgcagagctcagct
ccctgcagctctgagcgctctgatgtgacggccttgggagggagtataggcggagtgccc
agtgctgtgatccacatggggatcctaggtctgtgccccaccccagaggaggacacagca
agccagcgtggtgtctgtgaggacccccaaccccagtgcctatgccaggaacagcccccg
atagcaggacctagagccagcagcttctacgcaggttgccacgtttccgagcccaaggca
gatggcacttccaagccccttgtggttggggcagccttattccccaccaccaccaggaca
tctaatcggcacatccccagcgtcttaggtgtttggcacataagaggtgctcaggacgta
gctgaggaacaaagggtatggttgaagtttgctaaagctgtggtccccaccccccaccag
ttgctgagagccacccactatcccagcattggtgctgtgattggaagagaagctgggaca
gggagaggacaggatgagaactccccaacctgcctcctgctgcggagcagccacctgggg
tcagcagccacctctgagcaaggcaacagcgacttgcgggactacacggccctgcctggc
actggagcacgcggagaaatagccacagcgctaattaccaggcagagcattgatatccca
taa