Result of FASTA (omim) for pF1KB6401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6401, 304 aa
  1>>>pF1KB6401 304 - 304 aa - 304 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8219+/-0.00033; mu= 5.2061+/- 0.021
 mean_var=145.2423+/-29.622, 0's: 0 Z-trim(120.0): 138  B-trim: 0 in 0/54
 Lambda= 0.106421
 statistics sampled from 34556 (34711) to 34556 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.407), width:  16
 Scan time:  5.640

The best scores are:                                      opt bits E(85289)
NP_057399 (OMIM: 608165) PTB domain-containing eng ( 304) 2054 326.3 4.6e-89
XP_016859795 (OMIM: 608165) PREDICTED: PTB domain- ( 304) 2054 326.3 4.6e-89
NP_001239597 (OMIM: 608165) PTB domain-containing  ( 291) 1890 301.1 1.7e-81
XP_006712652 (OMIM: 608165) PREDICTED: PTB domain- ( 322) 1890 301.2 1.8e-81
XP_016859793 (OMIM: 608165) PREDICTED: PTB domain- ( 366) 1348 218.0 2.3e-56
XP_016859794 (OMIM: 608165) PREDICTED: PTB domain- ( 366) 1348 218.0 2.3e-56
XP_016859792 (OMIM: 608165) PREDICTED: PTB domain- ( 366) 1348 218.0 2.3e-56
XP_011509631 (OMIM: 608165) PREDICTED: PTB domain- ( 376) 1348 218.0 2.4e-56
XP_006712648 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 1348 218.0 2.4e-56
XP_006712645 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 1348 218.0 2.4e-56
XP_006712646 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 1348 218.0 2.4e-56
XP_006712647 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 1348 218.0 2.4e-56
XP_006712644 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 1348 218.0 2.4e-56
XP_006712643 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 1348 218.0 2.4e-56
XP_016859797 (OMIM: 608165) PREDICTED: PTB domain- ( 258) 1155 188.3 1.4e-47
NP_001239598 (OMIM: 608165) PTB domain-containing  ( 201) 1152 187.7 1.6e-47
XP_011509634 (OMIM: 608165) PREDICTED: PTB domain- ( 351) 1140 186.0 9.1e-47
XP_011509633 (OMIM: 608165) PREDICTED: PTB domain- ( 366) 1138 185.7 1.2e-46
XP_011509637 (OMIM: 608165) PREDICTED: PTB domain- ( 276)  991 163.1 5.8e-40
XP_016859796 (OMIM: 608165) PREDICTED: PTB domain- ( 276)  991 163.1 5.8e-40
XP_011509635 (OMIM: 608165) PREDICTED: PTB domain- ( 333)  726 122.4 1.2e-27
NP_001191010 (OMIM: 607815) ankyrin repeat and ste ( 254)  306 57.9 2.5e-08
XP_005269089 (OMIM: 607815) PREDICTED: ankyrin rep ( 266)  306 57.9 2.5e-08
NP_001191009 (OMIM: 607815) ankyrin repeat and ste ( 266)  306 57.9 2.5e-08
NP_001191008 (OMIM: 607815) ankyrin repeat and ste ( 290)  306 57.9 2.7e-08
NP_001190994 (OMIM: 607815) ankyrin repeat and ste ( 290)  306 57.9 2.7e-08
NP_001190995 (OMIM: 607815) ankyrin repeat and ste ( 357)  306 58.0 3.3e-08
NP_001190996 (OMIM: 607815) ankyrin repeat and ste ( 394)  306 58.0 3.5e-08
NP_064525 (OMIM: 607815) ankyrin repeat and steril ( 414)  306 58.0 3.7e-08
XP_016875154 (OMIM: 607815) PREDICTED: ankyrin rep ( 425)  306 58.0 3.8e-08
NP_001190999 (OMIM: 607815) ankyrin repeat and ste ( 426)  306 58.0 3.8e-08
XP_016875153 (OMIM: 607815) PREDICTED: ankyrin rep ( 429)  306 58.0 3.8e-08
NP_001190998 (OMIM: 607815) ankyrin repeat and ste ( 450)  306 58.0 3.9e-08
NP_001190997 (OMIM: 607815) ankyrin repeat and ste ( 460)  306 58.0   4e-08
XP_016875152 (OMIM: 607815) PREDICTED: ankyrin rep ( 476)  306 58.1 4.1e-08
XP_016875151 (OMIM: 607815) PREDICTED: ankyrin rep ( 479)  306 58.1 4.2e-08
XP_016875150 (OMIM: 607815) PREDICTED: ankyrin rep ( 479)  306 58.1 4.2e-08
XP_016875149 (OMIM: 607815) PREDICTED: ankyrin rep ( 486)  306 58.1 4.2e-08
NP_858056 (OMIM: 607815) ankyrin repeat and steril ( 510)  306 58.1 4.4e-08
XP_016875148 (OMIM: 607815) PREDICTED: ankyrin rep ( 511)  306 58.1 4.4e-08
XP_006719577 (OMIM: 607815) PREDICTED: ankyrin rep (1184)  306 58.3 8.8e-08
XP_016875147 (OMIM: 607815) PREDICTED: ankyrin rep (1188)  306 58.3 8.9e-08
XP_006719576 (OMIM: 607815) PREDICTED: ankyrin rep (1199)  306 58.3 8.9e-08
XP_006719575 (OMIM: 607815) PREDICTED: ankyrin rep (1200)  306 58.3 8.9e-08
XP_016875146 (OMIM: 607815) PREDICTED: ankyrin rep (1226)  306 58.3 9.1e-08
XP_006719573 (OMIM: 607815) PREDICTED: ankyrin rep (1235)  306 58.3 9.1e-08
NP_690001 (OMIM: 607815) ankyrin repeat and steril (1248)  306 58.3 9.2e-08
XP_016875145 (OMIM: 607815) PREDICTED: ankyrin rep (1250)  306 58.3 9.2e-08
XP_011536873 (OMIM: 607815) PREDICTED: ankyrin rep (1251)  306 58.3 9.2e-08
XP_005269086 (OMIM: 607815) PREDICTED: ankyrin rep (1256)  306 58.3 9.3e-08


>>NP_057399 (OMIM: 608165) PTB domain-containing engulfm  (304 aa)
 initn: 2054 init1: 2054 opt: 2054  Z-score: 1719.9  bits: 326.3 E(85289): 4.6e-89
Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPL
              250       260       270       280       290       300

           
pF1KB6 DSRC
       ::::
NP_057 DSRC
           

>>XP_016859795 (OMIM: 608165) PREDICTED: PTB domain-cont  (304 aa)
 initn: 2054 init1: 2054 opt: 2054  Z-score: 1719.9  bits: 326.3 E(85289): 4.6e-89
Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPL
              250       260       270       280       290       300

           
pF1KB6 DSRC
       ::::
XP_016 DSRC
           

>>NP_001239597 (OMIM: 608165) PTB domain-containing engu  (291 aa)
 initn: 1890 init1: 1890 opt: 1890  Z-score: 1584.1  bits: 301.1 E(85289): 1.7e-81
Smith-Waterman score: 1890; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPL
       :::::::::::::::::::::::::::::::::::::::::                   
NP_001 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQRQRWRGSKWD         
              250       260       270       280       290          

           
pF1KB6 DSRC

>>XP_006712652 (OMIM: 608165) PREDICTED: PTB domain-cont  (322 aa)
 initn: 1890 init1: 1890 opt: 1890  Z-score: 1583.5  bits: 301.2 E(85289): 1.8e-81
Smith-Waterman score: 1890; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPL
       :::::::::::::::::::::::::::::::::::::::::                   
XP_006 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQVTILIDWPINDLFHFDMGQ
              250       260       270       280       290       300

                             
pF1KB6 DSRC                  
                             
XP_006 RECYVPKLWFPSIIFAIKTRLK
              310       320  

>>XP_016859793 (OMIM: 608165) PREDICTED: PTB domain-cont  (366 aa)
 initn: 1370 init1: 1339 opt: 1348  Z-score: 1132.9  bits: 218.0 E(85289): 2.3e-56
Smith-Waterman score: 1584; 77.7% identity (77.7% similar) in 336 aa overlap (1-261:1-336)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200                                        
pF1KB6 MELKNKVQDLENQLRITQVSAPP-------------------------------------
       :::::::::::::::::::::::                                     
XP_016 MELKNKVQDLENQLRITQVSAPPLLHNMSDHEQHVFQRCSSSFWRSNGDSSPCLNISSIS
              190       200       210       220       230       240

                                                 210       220     
pF1KB6 --------------------------------------AGSMTPKSPSTDIFDMIPFSPI
                                             ::::::::::::::::::::::
XP_016 VTPINSPDSRLSLGLLIPPPSKCGFPKPVSESSIPRPHAGSMTPKSPSTDIFDMIPFSPI
              250       260       270       280       290       300

         230       240       250       260       270       280     
pF1KB6 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFK
       ::::::::::::::::::::::::::::::::::::                        
XP_016 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQRQRW
              310       320       330       340       350       360

         290       300    
pF1KB6 MGLTLEGTVFCLDPLDSRC
                          
XP_016 RGSKWD             
                          

>>XP_016859794 (OMIM: 608165) PREDICTED: PTB domain-cont  (366 aa)
 initn: 1370 init1: 1339 opt: 1348  Z-score: 1132.9  bits: 218.0 E(85289): 2.3e-56
Smith-Waterman score: 1584; 77.7% identity (77.7% similar) in 336 aa overlap (1-261:1-336)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200                                        
pF1KB6 MELKNKVQDLENQLRITQVSAPP-------------------------------------
       :::::::::::::::::::::::                                     
XP_016 MELKNKVQDLENQLRITQVSAPPLLHNMSDHEQHVFQRCSSSFWRSNGDSSPCLNISSIS
              190       200       210       220       230       240

                                                 210       220     
pF1KB6 --------------------------------------AGSMTPKSPSTDIFDMIPFSPI
                                             ::::::::::::::::::::::
XP_016 VTPINSPDSRLSLGLLIPPPSKCGFPKPVSESSIPRPHAGSMTPKSPSTDIFDMIPFSPI
              250       260       270       280       290       300

         230       240       250       260       270       280     
pF1KB6 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFK
       ::::::::::::::::::::::::::::::::::::                        
XP_016 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQRQRW
              310       320       330       340       350       360

         290       300    
pF1KB6 MGLTLEGTVFCLDPLDSRC
                          
XP_016 RGSKWD             
                          

>>XP_016859792 (OMIM: 608165) PREDICTED: PTB domain-cont  (366 aa)
 initn: 1370 init1: 1339 opt: 1348  Z-score: 1132.9  bits: 218.0 E(85289): 2.3e-56
Smith-Waterman score: 1584; 77.7% identity (77.7% similar) in 336 aa overlap (1-261:1-336)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200                                        
pF1KB6 MELKNKVQDLENQLRITQVSAPP-------------------------------------
       :::::::::::::::::::::::                                     
XP_016 MELKNKVQDLENQLRITQVSAPPLLHNMSDHEQHVFQRCSSSFWRSNGDSSPCLNISSIS
              190       200       210       220       230       240

                                                 210       220     
pF1KB6 --------------------------------------AGSMTPKSPSTDIFDMIPFSPI
                                             ::::::::::::::::::::::
XP_016 VTPINSPDSRLSLGLLIPPPSKCGFPKPVSESSIPRPHAGSMTPKSPSTDIFDMIPFSPI
              250       260       270       280       290       300

         230       240       250       260       270       280     
pF1KB6 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFK
       ::::::::::::::::::::::::::::::::::::                        
XP_016 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQRQRW
              310       320       330       340       350       360

         290       300    
pF1KB6 MGLTLEGTVFCLDPLDSRC
                          
XP_016 RGSKWD             
                          

>>XP_011509631 (OMIM: 608165) PREDICTED: PTB domain-cont  (376 aa)
 initn: 1370 init1: 1339 opt: 1348  Z-score: 1132.7  bits: 218.0 E(85289): 2.4e-56
Smith-Waterman score: 1584; 77.7% identity (77.7% similar) in 336 aa overlap (1-261:1-336)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200                                        
pF1KB6 MELKNKVQDLENQLRITQVSAPP-------------------------------------
       :::::::::::::::::::::::                                     
XP_011 MELKNKVQDLENQLRITQVSAPPLLHNMSDHEQHVFQRCSSSFWRSNGDSSPCLNISSIS
              190       200       210       220       230       240

                                                 210       220     
pF1KB6 --------------------------------------AGSMTPKSPSTDIFDMIPFSPI
                                             ::::::::::::::::::::::
XP_011 VTPINSPDSRLSLGLLIPPPSKCGFPKPVSESSIPRPHAGSMTPKSPSTDIFDMIPFSPI
              250       260       270       280       290       300

         230       240       250       260       270       280     
pF1KB6 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFK
       ::::::::::::::::::::::::::::::::::::                        
XP_011 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQFIYG
              310       320       330       340       350       360

         290       300    
pF1KB6 MGLTLEGTVFCLDPLDSRC
                          
XP_011 RIQTDTNYMKLIEKRQ   
              370         

>>XP_006712648 (OMIM: 608165) PREDICTED: PTB domain-cont  (379 aa)
 initn: 1370 init1: 1339 opt: 1348  Z-score: 1132.7  bits: 218.0 E(85289): 2.4e-56
Smith-Waterman score: 1584; 77.7% identity (77.7% similar) in 336 aa overlap (1-261:1-336)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200                                        
pF1KB6 MELKNKVQDLENQLRITQVSAPP-------------------------------------
       :::::::::::::::::::::::                                     
XP_006 MELKNKVQDLENQLRITQVSAPPLLHNMSDHEQHVFQRCSSSFWRSNGDSSPCLNISSIS
              190       200       210       220       230       240

                                                 210       220     
pF1KB6 --------------------------------------AGSMTPKSPSTDIFDMIPFSPI
                                             ::::::::::::::::::::::
XP_006 VTPINSPDSRLSLGLLIPPPSKCGFPKPVSESSIPRPHAGSMTPKSPSTDIFDMIPFSPI
              250       260       270       280       290       300

         230       240       250       260       270       280     
pF1KB6 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFK
       ::::::::::::::::::::::::::::::::::::                        
XP_006 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFK
              310       320       330       340       350       360

         290       300    
pF1KB6 MGLTLEGTVFCLDPLDSRC
                          
XP_006 MGLTLEGTVFCLDPLDSRC
              370         

>--
 initn: 310 init1: 310 opt: 310  Z-score: 271.4  bits: 58.6 E(85289): 2.2e-08
Smith-Waterman score: 310; 100.0% identity (100.0% similar) in 43 aa overlap (262-304:337-379)

             240       250       260       270       280       290 
pF1KB6 PTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLE
                                     ::::::::::::::::::::::::::::::
XP_006 PTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLE
        310       320       330       340       350       360      

             300    
pF1KB6 GTVFCLDPLDSRC
       :::::::::::::
XP_006 GTVFCLDPLDSRC
        370         

>>XP_006712645 (OMIM: 608165) PREDICTED: PTB domain-cont  (379 aa)
 initn: 1370 init1: 1339 opt: 1348  Z-score: 1132.7  bits: 218.0 E(85289): 2.4e-56
Smith-Waterman score: 1584; 77.7% identity (77.7% similar) in 336 aa overlap (1-261:1-336)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200                                        
pF1KB6 MELKNKVQDLENQLRITQVSAPP-------------------------------------
       :::::::::::::::::::::::                                     
XP_006 MELKNKVQDLENQLRITQVSAPPLLHNMSDHEQHVFQRCSSSFWRSNGDSSPCLNISSIS
              190       200       210       220       230       240

                                                 210       220     
pF1KB6 --------------------------------------AGSMTPKSPSTDIFDMIPFSPI
                                             ::::::::::::::::::::::
XP_006 VTPINSPDSRLSLGLLIPPPSKCGFPKPVSESSIPRPHAGSMTPKSPSTDIFDMIPFSPI
              250       260       270       280       290       300

         230       240       250       260       270       280     
pF1KB6 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFK
       ::::::::::::::::::::::::::::::::::::                        
XP_006 SHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFK
              310       320       330       340       350       360

         290       300    
pF1KB6 MGLTLEGTVFCLDPLDSRC
                          
XP_006 MGLTLEGTVFCLDPLDSRC
              370         

>--
 initn: 310 init1: 310 opt: 310  Z-score: 271.4  bits: 58.6 E(85289): 2.2e-08
Smith-Waterman score: 310; 100.0% identity (100.0% similar) in 43 aa overlap (262-304:337-379)

             240       250       260       270       280       290 
pF1KB6 PTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLE
                                     ::::::::::::::::::::::::::::::
XP_006 PTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLE
        310       320       330       340       350       360      

             300    
pF1KB6 GTVFCLDPLDSRC
       :::::::::::::
XP_006 GTVFCLDPLDSRC
        370         




304 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:48:42 2016 done: Fri Nov  4 20:48:43 2016
 Total Scan time:  5.640 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com