FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB4372, 727 aa 1>>>pF1KB4372 727 - 727 aa - 727 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8780+/-0.00132; mu= 16.9963+/- 0.080 mean_var=82.7804+/-16.657, 0's: 0 Z-trim(101.8): 68 B-trim: 2 in 1/48 Lambda= 0.140965 statistics sampled from 6614 (6662) to 6614 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.559), E-opt: 0.2 (0.205), width: 16 Scan time: 2.820 The best scores are: opt bits E(32554) CCDS2202.1 GPD2 gene_id:2820|Hs108|chr2 ( 727) 4747 976.2 0 >>CCDS2202.1 GPD2 gene_id:2820|Hs108|chr2 (727 aa) initn: 4747 init1: 4747 opt: 4747 Z-score: 5218.5 bits: 976.2 E(32554): 0 Smith-Waterman score: 4747; 99.9% identity (100.0% similar) in 727 aa overlap (1-727:1-727) 10 20 30 40 50 60 pF1KB4 MAFQKAVKGTILVGGGALATVLGLSQFAHYRRKQMNLAYVKAADCISEPVNREPPSREAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 MAFQKAVKGTILVGGGALATVLGLSQFAHYRRKQMNLAYVKAADCISEPVNREPPSREAQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB4 LLTLQNTSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 LLTLQNTSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB4 YLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIMLPVYKWWQLPYYWVGIKLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 YLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIMLPVYKWWQLPYYWVGIKLY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB4 DLVAGSNCLKSSYVLSKSRALEHFPMLQKDKLVGAIVYYDGQHNDARMNLAIALTAARYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 DLVAGSNCLKSSYVLSKSRALEHFPMLQKDKLVGAIVYYDGQHNDARMNLAIALTAARYG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB4 AATANYMEVVSLLKKTDPQTGKVHVSGARCKDVLTGQEFDVRAKCVINATGPFTDSVRKM :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: CCDS22 AATANYMEVVSLLKKTDPQTGKVRVSGARCKDVLTGQEFDVRAKCVINATGPFTDSVRKM 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB4 DDKDAAAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQKMTIAGTTDTPTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 DDKDAAAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQKMTIAGTTDTPTD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB4 VTHHPIPSEEDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTDPKSADTQSISRNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 VTHHPIPSEEDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTDPKSADTQSISRNH 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB4 VVDISESGLITIAGGKWTTYRSMAEDTINAAVKTHNLKAGPSRTVGLFLQGGKDWSPTLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 VVDISESGLITIAGGKWTTYRSMAEDTINAAVKTHNLKAGPSRTVGLFLQGGKDWSPTLY 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB4 IRLVQDYGLESEVAQHLAATYGDKAFEVAKMASVTGKRWPIVGVRLVSEFPYIEAEVKYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 IRLVQDYGLESEVAQHLAATYGDKAFEVAKMASVTGKRWPIVGVRLVSEFPYIEAEVKYG 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB4 IKEYACTAVDMISRRTRLAFLNVQAAEEALPRIVELMGRELNWDDYKKQEQLETARKFLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 IKEYACTAVDMISRRTRLAFLNVQAAEEALPRIVELMGRELNWDDYKKQEQLETARKFLY 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB4 YEMGYKSRSEQLTDRSEISLLPSDIDRYKKRFHKFDADQKGFITIVDVQRVLESINVQMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 YEMGYKSRSEQLTDRSEISLLPSDIDRYKKRFHKFDADQKGFITIVDVQRVLESINVQMD 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB4 ENTLHEILNEVDLNKNGQVELNEFLQLMSAIQKGRVSGSRLAILMKTAEENLDRRVPIPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 ENTLHEILNEVDLNKNGQVELNEFLQLMSAIQKGRVSGSRLAILMKTAEENLDRRVPIPV 670 680 690 700 710 720 pF1KB4 DRSCGGL ::::::: CCDS22 DRSCGGL 727 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 19:50:12 2016 done: Mon Nov 7 19:50:13 2016 Total Scan time: 2.820 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]