Result of FASTA (ccds) for pF1KB6490
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6490, 357 aa
  1>>>pF1KB6490 357 - 357 aa - 357 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9650+/-0.000931; mu= 18.0998+/- 0.056
 mean_var=62.6073+/-13.135, 0's: 0 Z-trim(104.8): 23  B-trim: 3 in 1/49
 Lambda= 0.162092
 statistics sampled from 8067 (8075) to 8067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.248), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS11446.1 G6PC gene_id:2538|Hs108|chr17          ( 357) 2428 576.5 1.2e-164
CCDS2230.1 G6PC2 gene_id:57818|Hs108|chr2          ( 355) 1276 307.1 1.4e-83
CCDS59291.1 G6PC gene_id:2538|Hs108|chr17          ( 176)  811 198.2 4.4e-51
CCDS11476.1 G6PC3 gene_id:92579|Hs108|chr17        ( 346)  702 172.9 3.6e-43
CCDS46443.1 G6PC2 gene_id:57818|Hs108|chr2         ( 154)  546 136.2 1.8e-32


>>CCDS11446.1 G6PC gene_id:2538|Hs108|chr17               (357 aa)
 initn: 2428 init1: 2428 opt: 2428  Z-score: 3069.7  bits: 576.5 E(32554): 1.2e-164
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KB6 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 MGTAGVYYVMVTSTLSIFQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGTAGVYYVMVTSTLSIFQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VVAGVLSGIAVAETFSHIHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VVAGVLSGIAVAETFSHIHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 AQRWCEQPEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSSIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AQRWCEQPEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSSIV
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KB6 ASLVLLHVFDSLKPPSQVELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQPHKKSL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ASLVLLHVFDSLKPPSQVELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQPHKKSL
              310       320       330       340       350       

>>CCDS2230.1 G6PC2 gene_id:57818|Hs108|chr2               (355 aa)
 initn: 1287 init1: 755 opt: 1276  Z-score: 1613.8  bits: 307.1 E(32554): 1.4e-83
Smith-Waterman score: 1276; 50.8% identity (77.7% similar) in 354 aa overlap (5-356:1-354)

               10        20        30        40        50        60
pF1KB6 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
           :. ::  :.   ..:: .:.    .. ..: ..: :: :.. ::. :.....:: :
CCDS22     MDFLHRNGVLIIQHLQKDYRAYYTFLNFMSNVGDPRNIFFIYFPLCFQFNQTVGTK
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB6 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
       ..:::::::::::.:::::::.:::::: .:. : : : : ..:::.:::::::::::::
CCDS22 MIWVAVIGDWLNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHA
         60        70        80        90       100       110      

              130        140       150        160       170        
pF1KB6 MGTAGVYYVMVTSTLS-IFQGKIKPTYRFRCLN-VILWLGFWAVQLNVCLSRIYLAAHFP
       ::.. :.:::::..::    :  : .  .. :.  .::  :: .:..::.::...:.:::
CCDS22 MGASCVWYVMVTAALSHTVCGMDKFSITLHRLTWSFLWSVFWLIQISVCISRVFIATHFP
        120       130       140       150       160       170      

      180       190       200       210       220       230        
pF1KB6 HQVVAGVLSGIAVAETFSHIHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTL
       :::. ::..:. :::.: :  .: .:::  :.  ..::: ::.::::::. :..::::..
CCDS22 HQVILGVIGGMLVAEAFEHTPGIQTASLGTYLKTNLFLFLFAVGFYLLLRVLNIDLLWSV
        180       190       200       210       220       230      

      240       250       260       270       280       290        
pF1KB6 EKAQRWCEQPEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSS
         :..:: .:.:.::::::::.:..:::.:::::.:.:: :.  ::.:  .  : :::  
CCDS22 PIAKKWCANPDWIHIDTTPFAGLVRNLGVLFGLGFAINSEMFLLSCRGGNNYTLSFRLLC
        240       250       260       270       280       290      

      300       310       320       330       340       350       
pF1KB6 IVASLVLLHVFDSLKPPSQVELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQPHKKSL
        ..::..:...  :. :.. : .:::::::::: .::. :. ::: . ... :  ::: 
CCDS22 ALTSLTILQLYHFLQIPTHEEHLFYVLSFCKSASIPLTVVAFIPYSVHMLMKQSGKKSQ
        300       310       320       330       340       350     

>>CCDS59291.1 G6PC gene_id:2538|Hs108|chr17               (176 aa)
 initn: 829 init1: 811 opt: 811  Z-score: 1030.5  bits: 198.2 E(32554): 4.4e-51
Smith-Waterman score: 811; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KB6 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
CCDS59 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGKDKADL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 MGTAGVYYVMVTSTLSIFQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ
                                                                   
CCDS59 QISVLECHFVVGILGCAAECLSVTNLPCCSFSSSSCCWSPVRHCCCRNFQPHPQHL    
              130       140       150       160       170          

>>CCDS11476.1 G6PC3 gene_id:92579|Hs108|chr17             (346 aa)
 initn: 669 init1: 248 opt: 702  Z-score: 888.5  bits: 172.9 E(32554): 3.6e-43
Smith-Waterman score: 738; 35.3% identity (66.8% similar) in 340 aa overlap (12-351:8-338)

               10        20        30        40        50        60
pF1KB6 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
                  ::  .. :: .    .. .. .. ..: .  :   ::  .. .. ::: 
CCDS11     MESTLGAGIVIAEALQNQLAWLENVWLWITFLGDPKILFLFYFPAAYYASRRVGIA
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB6 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
       .::...: .::::.:::.:::.::.::: .. :::.. .  ..::: .::::::::::: 
CCDS11 VLWISLITEWLNLIFKWFLFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHC
         60        70        80        90        100       110     

              130       140       150       160       170       180
pF1KB6 MGTAGVYYVMVTSTLSIFQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ
       : :... . ..:.    .....    : : . :.  :.. .  : : ::::.. ::::::
CCDS11 MITGAALWPIMTA----LSSQVATRARSRWVRVMPSLAYCTFLLAVGLSRIFILAHFPHQ
         120           130       140       150       160       170 

              190       200       210       220       230       240
pF1KB6 VVAGVLSGIAVAETFSHIHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEK
       :.::...: ::   .   .  ..  :. : : .. :.  .  .:  :  ::.:: :..  
CCDS11 VLAGLITG-AVLGWLMTPRVPMERELSFYGLTALALMLGTSLIYWTLFTLGLDLSWSISL
              180       190       200       210       220       230

              250       260       270       280       290       300
pF1KB6 AQRWCEQPEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSSIV
       : .:::.:::.:.:. ::::: .. :. .:::.::.:  : .  ...:..    ... .:
CCDS11 AFKWCERPEWIHVDSRPFASLSRDSGAALGLGIALHSPCYAQVRRAQLGNGQ--KIACLV
              240       250       260       270       280          

              310       320       330       340       350         
pF1KB6 ASLVLLHVFDSLKPPSQVELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQPHKKSL  
        .. ::  .: :  : :. : ::...: : .. :   ....:. . .  .:        
CCDS11 LAMGLLGPLDWLGHPPQISL-FYIFNFLKYTLWPCLVLALVPWAVHMFSAQEAPPIHSS
      290       300        310       320       330       340      

>>CCDS46443.1 G6PC2 gene_id:57818|Hs108|chr2              (154 aa)
 initn: 546 init1: 546 opt: 546  Z-score: 696.4  bits: 136.2 E(32554): 1.8e-32
Smith-Waterman score: 546; 55.3% identity (81.1% similar) in 132 aa overlap (5-136:1-132)

               10        20        30        40        50        60
pF1KB6 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
           :. ::  :.   ..:: .:.    .. ..: ..: :: :.. ::. :.....:: :
CCDS46     MDFLHRNGVLIIQHLQKDYRAYYTFLNFMSNVGDPRNIFFIYFPLCFQFNQTVGTK
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB6 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
       ..:::::::::::.:::::::.:::::: .:. : : : : ..:::.:::::::::::::
CCDS46 MIWVAVIGDWLNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHA
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KB6 MGTAGVYYVMVTSTLSIFQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ
       ::.. :.:::::..::                                            
CCDS46 MGASCVWYVMVTAALSHTVCGMDKFSITLHRHAGGRGL                      
        120       130       140       150                          




357 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:09:04 2016 done: Fri Nov  4 23:09:04 2016
 Total Scan time:  1.760 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com