Result of FASTA (ccds) for pF1KB6391
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6391, 276 aa
  1>>>pF1KB6391 276 - 276 aa - 276 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1722+/-0.000722; mu= 15.4137+/- 0.043
 mean_var=59.1434+/-11.706, 0's: 0 Z-trim(108.4): 20  B-trim: 0 in 0/53
 Lambda= 0.166771
 statistics sampled from 10169 (10182) to 10169 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.313), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS31958.1 EXOSC8 gene_id:11340|Hs108|chr13       ( 276) 1821 446.2 1.2e-125
CCDS3722.2 EXOSC9 gene_id:5393|Hs108|chr4          ( 439)  412 107.2 2.1e-23
CCDS34057.1 EXOSC9 gene_id:5393|Hs108|chr4         ( 456)  412 107.3 2.1e-23
CCDS2725.1 EXOSC7 gene_id:23016|Hs108|chr3         ( 291)  375 98.3 6.9e-21


>>CCDS31958.1 EXOSC8 gene_id:11340|Hs108|chr13            (276 aa)
 initn: 1821 init1: 1821 opt: 1821  Z-score: 2369.1  bits: 446.2 E(32554): 1.2e-125
Smith-Waterman score: 1821; 100.0% identity (100.0% similar) in 276 aa overlap (1-276:1-276)

               10        20        30        40        50        60
pF1KB6 MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVIC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGG
              190       200       210       220       230       240

              250       260       270      
pF1KB6 SGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMKPK
       ::::::::::::::::::::::::::::::::::::
CCDS31 SGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMKPK
              250       260       270      

>>CCDS3722.2 EXOSC9 gene_id:5393|Hs108|chr4               (439 aa)
 initn: 227 init1: 142 opt: 412  Z-score: 533.8  bits: 107.2 E(32554): 2.1e-23
Smith-Waterman score: 412; 29.2% identity (64.0% similar) in 264 aa overlap (15-272:11-271)

               10            20        30        40        50      
pF1KB6 MAAGFKTVEPLEYYRRFL----KENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNT
                     ::::    .:. : :::.  ..:.  ...:   :  :  .:.::.:
CCDS37     MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKT
                   10        20        30        40           50   

         60        70        80        90       100       110      
pF1KB6 TVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENS
        :.  :. :...:. .   .: .  :..:  . .  :. :  ..     ....   ..::
CCDS37 RVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNS
            60        70        80        90       100       110   

        120       130       140       150       160       170      
pF1KB6 QIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN-EETA
       . :. :.::.  :. :: .  ::  :..::::.:: ..: ..:: . . :.:... .:..
CCDS37 KCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVT
           120       130       140       150       160       170   

         180       190       200        210       220       230    
pF1KB6 LAEVNLKKKSYLNIRTHPVATSFAVFDD-TLLIVDPTGEEEHLATGTLTIVMDEEGKLCC
       :   . .    :.:.  :. .::: :.. : :.:::. .::..  : :.:.:... ..: 
CCDS37 LYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICT
           180       190       200       210       220       230   

          240       250       260       270                        
pF1KB6 LHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMKPK                  
       ... ::  :   ..  : . : ..  :. .:. .....                      
CCDS37 IQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRI
           240       250       260       270       280       290   

CCDS37 TAFKMEKAPIDTSDVEEKAEEIIAEAEPPSEVVSTPVLWTPGTAQIGEGVENSWGDLEDS
           300       310       320       330       340       350   

>>CCDS34057.1 EXOSC9 gene_id:5393|Hs108|chr4              (456 aa)
 initn: 227 init1: 142 opt: 412  Z-score: 533.6  bits: 107.3 E(32554): 2.1e-23
Smith-Waterman score: 412; 29.2% identity (64.0% similar) in 264 aa overlap (15-272:11-271)

               10            20        30        40        50      
pF1KB6 MAAGFKTVEPLEYYRRFL----KENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNT
                     ::::    .:. : :::.  ..:.  ...:   :  :  .:.::.:
CCDS34     MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKT
                   10        20        30        40           50   

         60        70        80        90       100       110      
pF1KB6 TVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENS
        :.  :. :...:. .   .: .  :..:  . .  :. :  ..     ....   ..::
CCDS34 RVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNS
            60        70        80        90       100       110   

        120       130       140       150       160       170      
pF1KB6 QIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN-EETA
       . :. :.::.  :. :: .  ::  :..::::.:: ..: ..:: . . :.:... .:..
CCDS34 KCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVT
           120       130       140       150       160       170   

         180       190       200        210       220       230    
pF1KB6 LAEVNLKKKSYLNIRTHPVATSFAVFDD-TLLIVDPTGEEEHLATGTLTIVMDEEGKLCC
       :   . .    :.:.  :. .::: :.. : :.:::. .::..  : :.:.:... ..: 
CCDS34 LYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICT
           180       190       200       210       220       230   

          240       250       260       270                        
pF1KB6 LHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMKPK                  
       ... ::  :   ..  : . : ..  :. .:. .....                      
CCDS34 IQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRI
           240       250       260       270       280       290   

CCDS34 TAFKMEKAPIDTSDVEEKAEEIIAEAEPPSEVVSTPVLWTPGTAQIGEGVENSWGDLEDS
           300       310       320       330       340       350   

>>CCDS2725.1 EXOSC7 gene_id:23016|Hs108|chr3              (291 aa)
 initn: 391 init1: 316 opt: 375  Z-score: 488.5  bits: 98.3 E(32554): 6.9e-21
Smith-Waterman score: 375; 28.6% identity (62.5% similar) in 269 aa overlap (18-276:18-283)

               10        20        30        40        50        60
pF1KB6 MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVIC
                        ..:. : :::   ..: . :.   .:...::: ::::.: .. 
CCDS27 MASVTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILV
               10        20        30        40        50        60

               70        80        90       100         110        
pF1KB6 GVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQFIADVIENSQI
       :::::...:. . :..::.   ::     . .:. :  :..  ...:. .   ...:.. 
CCDS27 GVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFE-GRGGDDLGTEIANTLYR-IFNNKSS
               70        80        90        100       110         

      120       130       140       150       160       170        
pF1KB6 IQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINE-ETALA
       .. . ::::: .  :::: :.. :.  ::..:: ..:. ::: :...:.: . : : .  
CCDS27 VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSK
      120       130       140       150       160       170        

       180           190       200       210       220       230   
pF1KB6 EVNLKKKSY----LNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLC
       ...:.   :    :.... :  ...  .     .:: : .::  . ..: . .  .: . 
CCDS27 DIELSDDPYDCIRLSVENVPCIVTLCKIGYRH-VVDATLQEEACSLASLLVSVTSKGVVT
      180       190       200       210        220       230       

           240       250       260       270                 
pF1KB6 CLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVI---KSMKPK        
       :..: : ..:   .. . :  .    : ..  .. :.   .:. ::        
CCDS27 CMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEESLGPKRQKVGFLG
       240       250       260       270       280       290 




276 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:46:13 2016 done: Fri Nov  4 20:46:13 2016
 Total Scan time:  2.120 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com