GENSCAN 1.0	Date run:  4-Nov-116	Time: 21:37:37

Sequence gi568815595r:185948642_186205868 : 257227 bp : 43.64% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  13267  13272    6  0  0   87   87     0 0.215   0.68
 1.02 Intr +  19942  20076  135  0  0   -1   42   187 0.426   5.96
 1.03 Intr +  22974  23223  250  2  1   71   33   516 0.771  41.41
 1.04 Intr +  26525  26715  191  0  2   66  113   101 0.783   9.70
 1.05 Term +  31017  31196  180  2  0   67   43   163 0.991   7.31
 1.06 PlyA +  31613  31618    6                              -0.45

 2.03 PlyA -  31724  31719    6                               1.05
 2.02 Term -  31989  31932   58  2  1  107   38    65 0.001   0.56
 2.01 Init -  58403  57277 1127  2  2   60   53   253 0.660  12.67
 2.00 Prom -  59767  59728   40                              -3.66

 3.08 PlyA -  60334  60329    6                               1.05
 3.07 Term - 100219  99998  222  1  0  121   38   372 0.999  32.42
 3.06 Intr - 103490 103389  102  2  0  114  105   210 0.999  25.67
 3.05 Intr - 108603 108434  170  1  2   76   69   167 0.999  13.27
 3.04 Intr - 108850 108782   69  2  0   85  115    90 0.999  10.55
 3.03 Intr - 115877 115776  102  0  0  103  116    37 0.946   8.15
 3.02 Intr - 117385 117172  214  1  1  108   76   115 0.940  10.59
 3.01 Init - 118484 118461   24  2  0   86   77     0 0.720  -2.32
 3.00 Prom - 119568 119529   40                              -3.46

 4.04 PlyA - 121178 121173    6                               1.05
 4.03 Term - 131363 131207  157  1  1   72   44   117 0.623   3.11
 4.02 Intr - 132534 132405  130  1  1   95   97   142 0.973  15.55
 4.01 Init - 139516 139414  103  1  1   77   23   131 0.745   5.90
 4.00 Prom - 141174 141135   40                              -6.46

 5.00 Prom + 147726 147765   40                              -2.36
 5.01 Init + 154153 154208   56  0  2   59  106    61 0.872   6.08
 5.02 Intr + 159651 159773  123  0  0   97   85    34 0.699   3.70
 5.03 Term + 160328 160535  208  2  1  110   41   166 0.755  10.91
 5.04 PlyA + 161590 161595    6                               1.05

 6.09 PlyA - 162694 162689    6                              -0.45
 6.08 Term - 163737 163438  300  0  0   37   54   132 0.840  -0.08
 6.07 Intr - 165527 165389  139  1  1   77  100   107 0.941  11.27
 6.06 Intr - 186735 186680   56  0  2   94   72    55 0.128   2.28
 6.05 Intr - 213022 212962   61  0  1   75  113    47 0.683   4.64
 6.04 Intr - 216377 216257  121  0  1   91   85    90 0.209   8.55
 6.03 Intr - 239738 239561  178  2  1   85  121   216 0.998  24.09
 6.02 Intr - 241352 241213  140  0  2   26   33    92 0.052  -2.32
 6.01 Init - 256309 256225   85  1  1   46   91   115 0.673   8.58

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 199107 199274  168  2  0   95   37   109 0.882   6.03


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:185948642_186205868|GENSCAN_predicted_peptide_1|253_aa
MIRLGAEVVKGDLNDKASVDSALKGVYGAFLVTNFWDPLNQDKEVCRGKLVADSAKHLGL
KHVVYSGLENVKRLTDGKLEVPHFDSKGEVEEYFWSIGIPMTSVRVAAYFENFLAAWRPV
KASDGDYYTLAVPMGDVPMDGISVADIGAAVSSIFNSPEEFLGKAVGLSAEALTIQQYAD
VLSKVLGKEVRDAKITPEAFEKLGFPAAKEIANMCRFYEMKPDRDVNLTHQLNPKVKSFS
QFISENQGAFKGM

>gi568815595r:185948642_186205868|GENSCAN_predicted_CDS_1|762_bp
atgattcgccttggagctgaggtggtcaaaggtgacctgaatgataaagcatcggtggac
agtgccttaaaaggtgtctatggggccttcttggtgaccaacttctgggaccctctcaac
caagataaggaagtgtgtcgggggaagctggtggcagactccgccaagcacctgggtctg
aagcacgtggtgtacagcggcctggagaacgtcaagcgactgacggatggcaagctggag
gtgccgcactttgacagcaagggcgaggtggaggagtacttctggtccattggcatcccc
atgaccagtgtccgcgtggcggcctactttgaaaactttctcgcggcgtggcggcccgtg
aaagcctctgatggagattactacaccttggctgtaccgatgggagatgtaccaatggat
ggtatctctgttgctgatattggagcagccgtctctagcatttttaattctccagaggaa
tttttaggcaaggccgtggggctcagtgcagaagcactaacaatacagcaatatgctgat
gttttgtccaaggttttggggaaagaagtccgagatgcaaagattaccccggaagctttc
gagaagctgggattccctgcagcaaaggaaatagccaatatgtgtcgtttctatgaaatg
aagccagaccgagatgtcaatctcacccaccaactaaatcccaaagtcaaaagcttcagc
cagtttatctcagagaaccagggagccttcaagggcatgtag

>gi568815595r:185948642_186205868|GENSCAN_predicted_peptide_2|394_aa
MSELPFTIASKRIKYLGIQLTRDVKDLCKENYKPLLNEIKEDTNKWKNIPCSWVGRINIV
KMAILPKVIYRFNAIPIKLPMSFFTELEKTTLKFIWHQKRAHITKSILSQKNKAGGITLP
DFKLYYKATVTKTAWYWYQNRDIDLWNRTEPSEITPHIYNYLIFDKPEKNKQWGKHSLFN
KWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLHVRPKTIKTIEENLGITIQDIGMGKD
FMSKTPKAMATKAKIDKWDLIELKSFCTAKETTIRVNRQPTKWEKIFTTYSSDKGLISRI
YNELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSPSLAIREMQTKTTMRYH
LTPVRMAIIKKSGNNRSPGFCLELNEEMGPLALA

>gi568815595r:185948642_186205868|GENSCAN_predicted_CDS_2|1185_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaactt
acaagggacgtgaaggacctctgcaaggagaactacaaaccactgctcaatgaaataaaa
gaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatattgtg
aaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctacca
atgagtttcttcacagaattggaaaaaactactttaaagttcatatggcaccaaaaaaga
gcccacatcaccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacct
gacttcaaactatactacaaggctacagtaaccaaaacagcatggtattggtaccaaaac
agagatatagatctatggaacagaacagagccctcagaaataacaccgcatatctacaac
tatctgatctttgacaaacctgagaaaaacaagcaatggggaaagcattccctatttaat
aaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttcctt
acaccttatacaaaaattaattcaagatggattaaagacttacatgttagacctaaaacc
ataaaaaccatagaagaaaacctaggcattaccattcaggacataggcatgggcaaggac
ttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaatagacaaatgggatcta
attgaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacct
acaaaatgggagaaaattttcacaacctactcatctgacaaagggctaatatccagaatc
tacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcg
aaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaa
aaatgctcaccatcactggctatcagagaaatgcaaaccaaaaccacaatgagataccat
ctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacagatcccctggattt
tgcctagagctaaacgaggagatgggccccctggccctggcatga

>gi568815595r:185948642_186205868|GENSCAN_predicted_peptide_3|300_aa
MGFWHVGQPGVPGDNRPSYHRQMSEPIVPAAPPPPQGFKQEYHDPLYEHGVPGMPGPPAH
GFQSPMGIKQEPRDYCVDSETIDRIVSTFAFLSEVPNCQSSYMRGGYFSSSHEGFSYEKD
PRLYFDDTCVVPERLEGKVKQEPTMYREGPPYQRRGSLQLWQFLVTLLDDPANAHFIAWT
GRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCD
PDALFSMAFPDNQRPFLKAESECHLSEEDTLPLTHFEDSPAYLLDMDRCSSLPYAEGFAY

>gi568815595r:185948642_186205868|GENSCAN_predicted_CDS_3|903_bp
atggggttttggcacgttggccagccaggagttcctggagataatcgccccagttaccat
cggcaaatgtcagaacctattgtccctgcagctcccccgccccctcagggattcaaacaa
gaataccatgacccactctatgaacatggggtcccgggcatgccagggcccccagcacac
gggttccagtcaccaatgggaatcaagcaggagcctcgggattactgcgtcgattcagaa
actattgacaggattgtgtccacctttgctttcctttcagaagtgcctaactgccagtca
tcctacatgagagggggttatttctccagcagccatgaaggtttttcatatgaaaaagat
ccccgattatactttgacgacacttgtgttgtgcctgagagactggaaggcaaagtcaaa
caggagcctaccatgtatcgagaggggcccccttaccagaggcgaggttcccttcagctg
tggcagttcctggtcacccttcttgatgacccagccaatgcccacttcattgcctggaca
ggtcgaggcatggagttcaagctgatagaaccggaagaggttgctcggcgctggggcatc
cagaagaaccggccagccatgaactatgacaagctgagccgctctctccgctattactat
gaaaagggcatcatgcagaaggtggctggagagcgatacgtctacaaatttgtctgtgac
ccagatgccctcttctccatggctttcccggataaccagcgtccgttcctgaaggcagag
tccgagtgccacctcagcgaggaggacaccctgccgctgacccactttgaagacagcccc
gcttacctcctggacatggaccgctgcagcagcctcccctatgccgaaggctttgcttac
taa

>gi568815595r:185948642_186205868|GENSCAN_predicted_peptide_4|129_aa
MSLGQMKVNETEEGTRKTPKQNVKDGNCWKAVKALVLHAPPPTKIKRELHSPSSELSSCS
HEQALGANYGEKCLYNYWQLCPPQGMPLQLAQFKVWAPPPPPIRFQSLDHSSKHLRSPDH
HISPCRCQR

>gi568815595r:185948642_186205868|GENSCAN_predicted_CDS_4|390_bp
atgagtctgggccagatgaaggtaaatgaaactgaagaagggacaaggaaaaccccaaaa
cagaacgtgaaggatggcaactgctggaaggcggtcaaagccttggtgcttcatgcccca
cctccaaccaagatcaaacgggagctgcacagcccctcctctgagctgtcgtcttgtagc
catgagcaggctcttggtgctaactatggagaaaagtgcctctacaactattggcaactc
tgcccacctcagggcatgcccctgcagctggcccagttcaaggtgtgggccccgcccccg
ccccccattcgcttccagagcctggaccacagcagcaaacatttgcggtcccccgaccac
cacatcagcccctgcagatgccaaagatga

>gi568815595r:185948642_186205868|GENSCAN_predicted_peptide_5|128_aa
MTGVKLVLNSRLWKALMEKPLFRCAPIFSSRRTAGRPQPAGWEQGDWMSTFHHLKLARPA
GPGGAGALTHARSGPGRLGERLGRTAPKTVNRSAHQRLDSAPQLPTRLERWPGPPRLAAP
PAAIGPRP

>gi568815595r:185948642_186205868|GENSCAN_predicted_CDS_5|387_bp
atgactggagtgaagctggtcctgaactcgaggctgtggaaagcgctcatggaaaagccg
ctgttccggtgcgccccgattttctcgagtcgccgcacagccggacgccctcagcctgct
gggtgggagcagggcgactggatgtccactttccaccacctgaaacttgcaaggcctgcc
ggccccggcggcgcaggcgcgctcacgcacgcgcgcagcgggcctgggcgcctgggcgaa
aggctgggccgaaccgctccgaagacggtgaaccgctccgcgcaccagcggctggactct
gcgccgcagctgccaaccaggctggagcgctggcccggccccccgcggctcgctgctccg
cccgccgccattggcccgcggccctag

>gi568815595r:185948642_186205868|GENSCAN_predicted_peptide_6|359_aa
MEFHENPATIRDEEQKWELSDTAGGNISDGSAEYMCTMVIFIIIIIYLGGGLWRRKEGHS
VWVQKGEQDQLVETRCDGVGVDLSNIFLEGIAILNIPSMYGGTNLWGENKKNRAVIRESR
KGVTDPKELKFCVQDLSDQLLEVVGLEGAMEMGQIYTGLKSAGRRLAQCASVTIRTNKLL
PMQVDGEPWMQPCCTNGKKFYAFMLLCTINLKVRGFHEDKSLPAQDNNSEVWLELLKQVP
KEAQQLSLAWQASSQSPENKEGSLNVIDKELLNTTFNSYKGKDNKRRGAGEVNHKEKKEE
EWREDISKYLKMRSPPWAQELAQVIAGCTLTFNAAAKMAVPRAVPLVQHKPPNSQNQRL

>gi568815595r:185948642_186205868|GENSCAN_predicted_CDS_6|1080_bp
atggagttccatgaaaacccagccactatccgtgacgaggagcagaaatgggaactctca
gacactgctggtgggaacatcagtgatggcagtgctgaatacatgtgcacaatggtgatc
ttcatcatcatcatcatctatctagggggtggcctatggaggaggaaggagggtcattct
gtatgggttcagaagggagaacaggaccaactggtggaaacaagatgtgatggggttggg
gtggacctgagcaacatcttcctggaaggcattgccattctcaacattcccagcatgtac
ggaggcaccaatctctggggagaaaacaagaagaaccgggctgtgatccgggaaagcagg
aagggtgtcactgaccccaaagaactgaaattctgcgttcaagacctcagtgaccagctc
cttgaagtggtggggctagaaggagccatggagatggggcagatctacaccggcctgaag
agtgcaggcaggaggctggcccagtgcgcctctgtcaccatcaggacaaacaagctgctg
ccaatgcaagtggatggagaaccctggatgcagccatgttgcacgaatgggaagaagttt
tatgcctttatgcttctctgtaccatcaacctcaaagttcgtggctttcatgaagacaaa
tccttgccagcccaggacaataattcagaagtctggctggagttgctgaagcaggttcct
aaggaagcacagcagctctcactggcatggcaagcaagcagccaaagccctgagaacaag
gagggaagcctcaacgtaatagacaaagaacttctaaatactacctttaactcttataaa
ggcaaagataacaaaagaagaggagccggggaggtaaatcataaagagaagaaggaagaa
gagtggagagaagatatcagtaaatatttaaaaatgaggagcccaccctgggcccaggag
ctggctcaggtcatcgcaggctgtactctgacttttaatgctgcagccaagatggctgtg
ccaagagctgtaccccttgtccagcacaaacctccaaattcccagaatcagagactctga