GENSCAN 1.0	Date run:  4-Nov-116	Time: 23:17:37

Sequence gi568815590r:29237029_29450278 : 213250 bp : 43.46% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 Intr -   8411   8318   94  0  1  121  117    58 0.616  11.02
 1.05 Intr -  26061  25952  110  2  2   25   78   133 0.047   5.93
 1.04 Intr -  32796  32606  191  0  2   77   82    54 0.016   2.08
 1.03 Intr -  36245  36102  144  2  0   68   87    52 0.719   3.58
 1.02 Intr -  38857  38826   32  2  2  105   56    10 0.152  -2.65
 1.01 Init -  62322  62100  223  0  1   20   72   144 0.273   4.72
 1.00 Prom -  65786  65747   40                              -6.66

 2.00 Prom +  68101  68140   40                              -6.36
 2.01 Init +  68801  68971  171  1  0   76   88    58 0.873   4.04
 2.02 Intr +  70080  70455  376  2  1   81   53   141 0.235   4.49
 2.03 Intr +  72148  73062  915  2  0   58   80   194 0.312   6.84
 2.04 Intr +  73936  74161  226  2  1  101   -6    89 0.298  -2.16
 2.05 Intr +  74683  74906  224  1  2   63   44   126 0.233   3.47
 2.06 Term +  75716  75873  158  0  2  105   49    92 0.711   5.10
 2.07 PlyA +  77906  77911    6                               1.05

 3.03 PlyA -  78210  78205    6                              -0.45
 3.02 Term -  78481  78336  146  2  2   96   36   125 0.623   6.17
 3.01 Init -  83294  83207   88  2  1   47  116    21 0.240  -0.34
 3.00 Prom -  90941  90902   40                              -2.96

 4.05 PlyA -  91851  91846    6                               1.05
 4.04 Term - 100383  99998  386  1  2   63   43   460 0.999  34.05
 4.03 Intr - 101473 101254  220  1  1  104   74   301 0.999  28.17
 4.02 Intr - 103215 103070  146  1  2  141   74   152 0.999  19.10
 4.01 Init - 113250 112818  433  0  1  108   92   978 0.628  96.57
 4.00 Prom - 121842 121803   40                              -4.56

 5.03 PlyA - 122313 122308    6                               1.05
 5.02 Term - 128360 128091  270  2  0   87   43   148 0.844   5.68
 5.01 Init - 129388 129263  126  1  0   77   79    49 0.756   3.06
 5.00 Prom - 130191 130152   40                              -2.96

 6.09 PlyA - 130939 130934    6                               1.05
 6.08 Term - 132181 132075  107  2  2   84   48    43 0.267  -1.53
 6.07 Intr - 135366 135256  111  1  0   95  101    38 0.065   6.15
 6.06 Intr - 144256 144109  148  1  1   59   90    87 0.016   5.81
 6.05 Intr - 148609 148485  125  2  2   32   94    49 0.008   0.20
 6.04 Intr - 153738 153609  130  0  1   85   65   117 0.070   9.37
 6.03 Intr - 166345 166274   72  1  0   66   81    36 0.325   0.30
 6.02 Intr - 193354 193295   60  1  0   97   95     2 0.051   0.73
 6.01 Init - 210076 210014   63  1  0   89   97    23 0.120   4.45

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  26006  25952   55  2  1   76   78    92 0.891   8.45
S.002 Term -  34870  34691  180  1  0  123   37    93 0.898   5.31
S.003 Init + 143864 144093  230  1  2   71  111   123 0.954  10.74


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:29237029_29450278|GENSCAN_predicted_peptide_1|265_aa
MSVCSPCDIESNIILSPTGYGEQYHRRVCTTYDIESNILSPPEYCEHYYRGVCTPCNVKS
NIILLLLDVTNNITGSGLTSTTHLQGTSLTFNIQEDPSKHLNSLKSKSIQFSLLNPQGCD
FTFSGEMQSTYDKVEQPKIMTKSRCGPAAAGCWGVSVKAVDPGEHQTLHEEAGQVVVMIL
LPGQGDQGFAFRYLLLRVAGGRGRRKPNEFLGGCRMGDSKVKVAVRIRPMNRRETDLHTK
CVVDVDANKVILNPVNTNLSKGDAR

>gi568815590r:29237029_29450278|GENSCAN_predicted_CDS_1|795_bp
atgagtgtgtgcagcccctgcgatatcgagagtaatatcatcctctcgcccactggatat
ggcgaacaatatcacaggagggtgtgcaccacctacgatattgaaagtaatatcctctcg
ccccctgaatattgcgaacattattacaggggggtgtgtactccctgcaatgttaaaagt
aacatcatcctcttgctcctggatgttacgaacaatatcacaggctcaggcctcacctcc
accacccacctgcaggggacatctttaaccttcaacatccaagaagatccttctaaacat
ctcaattccttaaaatccaagtcaattcaattcagcctcctaaacccacagggttgtgac
tttaccttctcaggagaaatgcaatccacctatgacaaagtggagcagccaaagatcatg
acaaagtccaggtgtggccctgcggcggctggttgctggggagtgtcagtaaaggctgtg
gacccaggagagcaccagacactacatgaagaggcagggcaagtagtggtaatgatctta
ttgcctggacaaggggaccagggctttgcattcaggtatctcttactcagagtcgccggt
ggccgcggcagacggaagccgaacgagttcctcggcggctgcaggatgggggactccaaa
gtgaaagtggcggtgcggatacgacccatgaaccggcgagagactgacttgcataccaaa
tgtgtggtggatgtggatgcaaacaaggttattcttaatcctgtaaatacgaatctttcc
aaaggagatgcccgn

>gi568815590r:29237029_29450278|GENSCAN_predicted_peptide_2|689_aa
MQLQGPDNKLVDPAAMSGTLKGMLPKRDLPIYPIYPDLCPLGPNACETNFLSPLFSEKEI
SKEISKGPQKPLGYRLCPLQAIGAGEFGPTRVHVPFSLSDLKQIKADLGKFSDDPDRHID
VLQGLGQTFDLAWRDVMLLLDQTLAFYEKNVALAAAREFGDTWYLSQVNDRMTAEERDKF
PTANQGYKVSRSKAQLCLQQVKYLGLILAKGTRALSKERIQPILAYPCPKTLKQSRGFLG
ITAFWRLWIPRYSEIARPLYSLIKETQRANTHLVEWEPEAETAFKALKQALVQAPVLSLP
TGQNFSLYVTERARIALGVLTQTRGTTPQPVAYLSKEIDVVAKGWPHCLRVVAAVAVLVS
EASKIIQGKDLTVWTTHDVNGILGAKGSLWLSDNCLLRYQALLLEGLVLQIRMCVALNPA
TFLPEDGEPIEHDCQQIIVQTYATRDDLLDVPLTIPDLNLYTDGSSVVENGIQRTGYTIV
SDVTILESPVAAILLLLAFGACIFNLLVKFVSSRIEAFELQMVLQMEPQMSSTNNFYRGP
MDRPAGTSPGLESSPLKDTTTAGAWDLQPAMPEPPTPSVGSCVARASPMSAAPCSMAPSP
IDHPRAEECGHGTGLAGSSPAAPVRDPLGEASWAPESDIRNNITVGVYTPCDIGSNNIFS
PLDIMNNITKGAYTSCDIGSNIILSVPGY

>gi568815590r:29237029_29450278|GENSCAN_predicted_CDS_2|2070_bp
atgcagctccagggtcccgacaacaagttggttgaccctgcggccatgagtggaactctc
aaaggcatgttgcccaagcgagacttgcccatctatcctatctatcctgacctttgcccc
ctgggtcctaatgcctgtgagacaaacttcctctcgcctctcttctctgagaaggaaata
agcaaagaaatctccaaaggtccacaaaaacccctgggctatcgattatgtccccttcaa
gctataggggcaggggaatttggcccaacccgggtacatgtccccttctccctctctgat
ttaaagcagatcaaggcagacctggggaagttttcagatgatcctgataggcacatagat
gtcctacagggtctagggcaaacctttgacctcgcttggagagatgtcatgctactgtta
gatcaaaccctggccttttatgaaaagaatgtggctttagctgcagcccgagagtttgga
gatacctggtatcttagtcaagtaaatgatagaatgacagccgaagaaagggacaaattc
cctactgctaatcaagggtacaaggtgtctaggtcgaaggcccagctttgcctacagcag
gttaaatatctaggcctaatcttagccaaagggaccagggccctcagcaaggaacgaata
cagcctatactggcttatccttgccctaagacattaaaacagtcgagggggttccttgga
attaccgccttttggcgactatggatccccagatacagcgagatagccaggcccctctat
agtctaatcaaggaaacccagagggcaaatactcatctagtagaatgggaaccagaggca
gaaacagccttcaaagccttaaagcaggccttagtacaagctccagttttaagccttccc
acaggacagaacttctctttatacgtcacagagagagccaggatagctcttggagtcctc
actcagactcgtgggacaaccccacaaccagtggcatacctaagtaaggaaattgatgta
gtagcaaaaggctggcctcactgtttaagggtagttgcagcagtggctgtcttagtgtca
gaggccagcaaaataatacaaggaaaggatctcactgtctggactactcatgatgtaaat
ggcatactaggtgccaaaggaagtttatggctatcagacaactgcctacttagataccag
gcactactccttgagggactggtgcttcaaatacgcatgtgcgtggccctcaaccctgcc
acttttctcccagaggatggggaaccaatcgagcatgactgccaacaaattatagtccag
acttatgccacccgagatgatctcttagatgtccccttaactattcctgaccttaaccta
tataccgatggaagttcagttgtggagaatgggatacaaaggacaggttacaccatagtt
agtgatgtaaccatacttgaaagtcccgtggcagccatcttgctgttacttgcctttggg
gcctgtatttttaaccttcttgtcaaatttgtttcctctagaatcgaggccttcgagcta
cagatggtcttacaaatggaaccccaaatgagttcaactaacaacttctaccgaggaccc
atggaccgacccgctggcacttcccctggcctagagagttcccctctgaaggacactaca
actgcaggggcttgggacctgcagcccgccatgcctgagcctcccacgccctccgtgggc
tcctgtgtagcccgagcctccccgatgagtgccgccccctgctccatggcacccagtccc
attgaccacccaagggctgaggagtgtgggcacggcacgggactggcaggcagctcccct
gcagcccctgtgcgggatccactgggtgaagccagctgggctcctgagtctgatattagg
aacaatattacagtgggggtgtacaccccctgtgatattgggagtaataatatcttctcc
ccccttgatattatgaacaatatcacaaagggggcgtacacctcctgcgatattgggagt
aatatcatcctctctgtccctggatattag

>gi568815590r:29237029_29450278|GENSCAN_predicted_peptide_3|77_aa
MYVSLNTLMCTPPHLPLLQFLERAGHPMQGGEDGQPDSPQSGRKRGYNAERTSAQVVKIV
KMALLISSFRAADYLHP

>gi568815590r:29237029_29450278|GENSCAN_predicted_CDS_3|234_bp
atgtacgtaagcttgaatacgttgatgtgcaccccgccacatctcccccttcttcaattc
ttagagcgtgctggtcatccaatgcaaggcggagaagatgggcagcctgactcaccgcaa
tccggcagaaaaagaggctacaacgcggagcgtaccagcgctcaggtggtcaaaatagtt
aaaatggccttgctcatatcctctttccgggcagcggactacctgcacccataa

>gi568815590r:29237029_29450278|GENSCAN_predicted_peptide_4|394_aa
MVTMEELREMDCSVLKRLMNRDENGGGAGGSGSHGTLGLPSGGKCLLLDCRPFLAHSAGY
ILGSVNVRCNTIVRRRAKGSVSLEQILPAEEEVRARLRSGLYSAVIVYDERSPRAESLRE
DSTVSLVVQALRRNAERTDICLLKGGYERFSSEYPEFCSKTKALAAIPPPVPPSATEPLD
LGCSSCGTPLHDQGGPVEILPFLYLGSAYHAARRDMLDALGITALLNVSSDCPNHFEGHY
QYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHCQAGISRSATICLAYLMMKKR
VRLEEAFEFVKQRRSIISPNFSFMGQLLQFESQVLATSCAAEAASPSGPLRERGKTPATP
TSQFVFSFPVSVGVHSAPSSLPYLHSPITTSPSC

>gi568815590r:29237029_29450278|GENSCAN_predicted_CDS_4|1185_bp
atggtgacgatggaggagctgcgggagatggactgcagtgtgctcaaaaggctgatgaac
cgggacgagaatggcggcggcgcgggcggcagcggcagccacggcaccctggggctgccg
agcggcggcaagtgcctgctgctggactgcagaccgttcctggcgcacagcgcgggctac
atcctaggttcggtcaacgtgcgctgtaacaccatcgtgcggcggcgggctaagggctcc
gtgagcctggagcagatcctgcccgccgaggaggaggtacgcgcccgcttgcgctccggc
ctctactcggcggtcatcgtctacgacgagcgcagcccgcgcgccgagagcctccgcgag
gacagcaccgtgtcgctggtggtgcaggcgctgcgccgcaacgccgagcgcaccgacatc
tgcctgctcaaaggcggctatgagaggttttcctccgagtacccagaattctgttctaaa
accaaggccctggcagccatcccacccccggttccccccagtgccacagagcccttggac
ctgggctgcagctcctgtgggaccccactacacgaccaggggggtcctgtggagatcctt
cccttcctctacctcggcagtgcctaccatgctgcccggagagacatgctggacgccctg
ggcatcacggctctgttgaatgtctcctcggactgcccaaaccactttgaaggacactat
cagtacaagtgcatcccagtggaagataaccacaaggccgacatcagctcctggttcatg
gaagccatagagtacatcgatgccgtgaaggactgccgtgggcgcgtgctggtgcactgc
caggcgggcatctcgcggtcggccaccatctgcctggcctacctgatgatgaagaaacgg
gtgaggctggaggaggccttcgagttcgttaagcagcgccgcagcatcatctcgcccaac
ttcagcttcatggggcagctgctgcagttcgagtcccaggtgctggccacgtcctgtgct
gcggaggctgctagcccctcgggacccctgcgggagcggggcaagacccccgccaccccc
acctcgcagttcgtcttcagctttccggtctccgtgggcgtgcactcggcccccagcagc
ctgccctacctgcacagccccatcaccacctctcccagctgttag

>gi568815590r:29237029_29450278|GENSCAN_predicted_peptide_5|131_aa
MPAAREGAKEEEGGITDGSGTGRCQSEVHQYVCFSTQSLSQVKVLLPKVPQMPLPLRALD
LKEAPTLSSTEPWGRCVDGTWCTDSSSSASSFRERSSGDVLHTLPSTAKEGHVLPTNLAL
SLFFPTFFNCS

>gi568815590r:29237029_29450278|GENSCAN_predicted_CDS_5|396_bp
atgccagctgcaagggagggggccaaagaagaggaaggaggaatcacagatggctctggg
acaggccgctgtcaatctgaagtccaccaatatgtatgcttctccacgcagtcactctct
caggtgaaggtgttgctgcccaaagtgccccagatgccgctgcccctcagggccctggac
ctcaaggaagcccccactctcagcagcacagagccatgggggagatgtgtggatggcact
tggtgcaccgattccagcagctctgcatcctcctttagagagagaagctccggggacgtc
ctccacacactgccttctacagcaaaggagggtcacgttcttccaactaacctggcactc
tccctcttcttccccaccttcttcaactgctcttag

>gi568815590r:29237029_29450278|GENSCAN_predicted_peptide_6|271_aa
MAKTGLFEDLAILPPGFSEGQKIAKSIMQLATISSCPCKYPNIWILKLQPEDQILIGGSA
LEVLLPHLRNTGVDLFPESAALTTQQLTARADGADSCYYPELLRRDARVCERERIIQDST
EKEKKKKTEFLSKTSAQTSPFLEPRQGVVWLVFCKPSERGEKVFPWPLQFWHCEQDNQIH
SAFLEAAVKGTQDLTSWQKDSQCTSICSTQDITDCQRCHTVLLWLFLVVIFAPQGDVNSQ
HGGLIDPGKSNPAHVTLPCKTLQRLPSPNGQ

>gi568815590r:29237029_29450278|GENSCAN_predicted_CDS_6|816_bp
atggctaaaactggcctatttgaagatttggctatactccctcctggtttctcagaaggt
cagaaaatagccaaaagcatcatgcaattggccaccatatcatcttgtccttgtaaatat
cctaatatctggattctgaaactccaaccagaagaccagatcctgattgggggatctgcc
cttgaggtattactgcctcacctcagaaacacaggtgtggacctgttcccagagtcagct
gctctgaccactcagcagctgacagcacgagctgatggtgctgacagctgttattaccca
gagctcctaaggagagatgccagagtatgtgaaagagaaagaatcatccaagattccaca
gagaaggagaaaaagaagaaaactgaatttctctccaaaacctctgcacagacaagtccc
tttctggaaccaaggcaaggggtggtgtggttggtgttctgcaaaccttcagagcgtggc
gagaaagttttcccttggcccctgcagttttggcactgtgagcaggacaaccaaatccac
tctgcttttctggaagctgcagtcaagggaacccaggacctgacaagctggcagaaggac
tcccagtgtacttccatctgcagcacacaggacatcacagattgtcaacgctgtcacaca
gtactgctctggttattcctcgtggttatctttgctcctcagggagatgtcaattctcaa
catggtggcctgattgatcctggaaaatccaatccagctcatgtcactcttccgtgcaaa
actctccaaaggcttccatcacccaacggccaatga