GENSCAN 1.0	Date run:  4-Nov-116	Time: 21:08:03

Sequence gi568815593r:172668765_172870952 : 202188 bp : 49.57% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1021   1566  546  2  0  121   69  1251 0.976 119.35
 1.02 Intr +  11579  11676   98  0  2   77   80    57 0.008   3.53
 1.03 Intr +  14657  15374  718  1  1   16  109  1464 0.001 132.31
 1.04 Intr +  17407  17532  126  2  0   88   82   152 0.998  15.25
 1.05 Term +  17917  18161  245  2  2   97   38   411 0.997  33.06
 1.06 PlyA +  20770  20775    6                              -0.45

 2.00 Prom +  22615  22654   40                              -6.96
 2.01 Init +  27182  27232   51  1  0   90   58    45 0.736   2.86
 2.02 Intr +  28818  29176  359  2  2   44   40   250 0.121   9.85
 2.03 Intr +  37202  37385  184  2  1   50   92   115 0.830   7.89
 2.04 Intr +  42851  42991  141  1  0   54   94    65 0.891   4.25
 2.05 Intr +  47323  47474  152  0  2   94  100    24 0.500   3.16
 2.06 Intr +  50418  50455   38  0  2  108   99    19 0.180   2.91
 2.07 Intr +  56505  56705  201  1  0   13   72   147 0.097   4.86
 2.08 Intr +  58243  58355  113  2  2   36   89   137 0.953   8.70
 2.09 Intr +  59897  60047  151  1  1   21   97    84 0.738   2.34
 2.10 Intr +  64077  64235  159  1  0   90   56    77 0.906   4.66
 2.11 Intr +  72100  72236  137  2  2   83   24    98 0.125   3.19
 2.12 Term +  79816  80121  306  0  0   33   48   212 0.344   6.82
 2.13 PlyA +  81991  81996    6                               1.05

 3.03 PlyA -  83075  83070    6                               1.05
 3.02 Term -  93935  93750  186  2  0   98   45   227 0.869  16.89
 3.01 Init -  94494  94048  447  0  0   62  -33   488 0.539  28.07
 3.00 Prom -  96092  96053   40                              -3.16

 4.09 PlyA -  96678  96673    6                               1.05
 4.08 Term - 100368  99998  371  1  2   86   48   321 0.939  22.71
 4.07 Intr - 101030 100811  220  2  1   57   67   384 0.998  31.07
 4.06 Intr - 101542 101397  146  2  2   38   92    72 0.994   2.60
 4.05 Intr - 102469 101822  648  2  0   77  107   966 0.366  89.32
 4.04 Intr - 104036 103977   60  0  0   85   70    68 0.344   3.41
 4.03 Intr - 105149 105038  112  2  1   81   60    36 0.059   0.05
 4.02 Intr - 120661 120521  141  1  0   48   37   130 0.108   4.45
 4.01 Init - 125151 125047  105  0  0   17   42   139 0.088   2.42
 4.00 Prom - 127209 127170   40                              -4.86

 5.06 PlyA - 128154 128149    6                               1.05
 5.05 Term - 149271 149127  145  2  1   95   45    76 0.007   1.38
 5.04 Intr - 175418 175242  177  1  0  107   85    74 0.360   8.03
 5.03 Intr - 181035 180892  144  2  0  104   83    58 0.214   6.30
 5.02 Intr - 183988 183953   36  0  0   84  127    10 0.068   1.88
 5.01 Init - 190092 189965  128  0  2   92   95    69 0.117   5.68

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  14655  15374  720  1  0  106  109  1465 0.821 141.80


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:172668765_172870952|GENSCAN_predicted_peptide_1|577_aa
XPSPPARLLATRPCCGPGPERRPVLGEAPRFHAQAKGKNVRLDGHSRRATRRNSFCNGVT
FTQRPIRLYEQVRLRLVAVRPGWSGALRFGFTAHDPSLMSAQDIPKYACPDLVTRPGYWA
KALPENLALRDTVLAYWADRHGRVFYSVNDGEPVLFHCGVAVGGPLWALIDVYGITDEVQ
LLGHALNKDAALMGSCVEPLGDKRRRVGGGEGAGQSAFADTLTPARLSQARFSACLPPSS
HDAANFDNNELENNQVVAKLGHLALGRAPGPPPADAAAAAIPCGPRERPRPASSPALLEA
DLRFHATRGPDVSLSADRKVACAPRPDGGRTLVFSERPLRPGESLFVEVGRPGLAAPGAL
AFGITSCDPGVLRPNELPADPDALLDRKEYWVVARAGPVPSGGDALSFTLRPGGDVLLGI
NGRPRGRLLCVDTTQALWAFFAVRGGVAGQLRLLGTLQSSPATTTPSGSLSGSQDDSDSD
MTFSVNQSSSASESSLVTAPSSPLSPPVSPVFSPPEPAGIKNGECTVCFDGEVDTVIYTC
GHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIYRP

>gi568815593r:172668765_172870952|GENSCAN_predicted_CDS_1|1734_bp
nacccgagcccaccggcgcgcctcctggccacccggccgtgctgcggccccggccccgag
cgacgcccggtcctgggcgaggcgccgcgcttccacgcgcaggccaaaggcaagaacgtg
cggctggacggccactcgcgccgggccacacggcgcaacagcttctgcaatggcgtcacg
ttcacgcagcggcccatccggctgtacgagcaggtgcggctgcgcctggtggccgtgcgc
cctggctggagcggcgcgctgcgcttcggcttcaccgcgcacgatccgtcgctcatgagc
gcccaggacatccccaagtacgcctgcccggacctggtcacgcggccgggctactgggcc
aaggcactgcccgagaacctggcgctgcgcgacacggtgctggcctactgggccgaccgc
cacggccgcgtgttctacagcgtgaacgacggcgagccggtgctcttccactgcggcgtg
gccgtgggcggcccgctctgggcgctcattgatgtctacggcatcaccgacgaggtgcag
cttctgggccatgctcttaataaggatgctgcactgatgggctcctgtgtggagccgctg
ggggacaagaggaggagagttggcgggggggaaggagcagggcaaagcgccttcgctgac
acgctgacgcccgcgcgcctcagccaggcccgcttcagcgcctgcctgccgcccagcagc
cacgacgcggccaacttcgacaacaacgagctcgagaacaaccaggtggtggccaagctg
ggccacctggcgctgggccgcgccccgggcccaccgccagccgacgccgcggccgccgcc
attccgtgcgggccccgtgagcgcccgcggcccgcgtcgtcgccggcgctactggaggcc
gacctgcgcttccacgcaacacgcgggcccgacgtgagcctgtcggccgaccgcaaagtg
gcctgcgcaccgcggcccgacggcggccgcacgctggtcttctccgagcgcccgctgcgg
cccggcgagagcctcttcgtggaggtgggccgtccggggctggcggcgcccggcgcgctg
gccttcggcatcacgtcgtgcgacccgggcgtgctacggcccaacgagctgcccgccgac
ccagacgcgctgctcgaccgcaaagagtactgggtggtggcgcgcgccgggcccgtgccg
agcggcggcgacgcgctcagcttcacgctgcggcccggcggcgacgtgctcctgggcatc
aacgggcgtccgcgcggccgcctgctgtgcgtcgacaccacgcaggcgctctgggccttc
ttcgccgtgcgcggcggcgtcgcgggccagctgcgtctcctcggtaccctgcagtccagc
cctgcgaccacgactccatcagggtccctcagcggctcccaggacgatagtgattcagat
atgaccttcagtgtcaaccagtcctcctcggcatctgagtcatccctggtgacggccccc
agctccccgctgagccccccggtgtcccccgtgttctccccaccggagccggcaggcatc
aagaatggcgagtgcacggtgtgcttcgatggcgaggtggacacggtcatctacacgtgt
ggacacatgtgcctgtgccacagctgcggcctgcggctcaagcgacaggcccgggcctgc
tgccccatctgccggcggcccatcaaggacgtcattaagatctacaggccatag

>gi568815593r:172668765_172870952|GENSCAN_predicted_peptide_2|663_aa
MGMPPSEPPPRGPYVGPGVKLKVLKFREVARQAPRQKARGLDGFFLEDGALSLSSGHGEK
WQRPEQKDIGQGPGAGQIYTPYHPPERILQKPQRPGSQTPANGLVDLGNLEEARQGDIES
GSGVKSAFGGGLELRVCMCADEDHLKKKALVMWKGEKTKQARLPRKQEEIQGPKAVVAVV
GRRTFAAVWQAERRCRKEPLDSSSKPPPRNCKPTLNPSTSTHQSITQSVNQSNNNTLVLI
SRSLQAPKLERVDIGHGDLCECLPSLLQSTPCITQSTRPGPGVTLSSAQHCQEGRRKEVR
IKDGSSDPDDFFISIAPQRGLATVMCTNAEQIHNTVTYNWGSVNQPSDGPCHQSIEPASS
QQRRGWQWKPDPKGKVPSDALQQVLAELVLEELENSPFLEACSLQSPPHWSSSSIGNELL
GAVAGSKENRPMTPAICQVRGNGSEQGNKLEGERRNWTPEISEGGTQHYQENHCSLRTYY
DARPIVRDLLDIHDGCDRHWNAHKDTAPSRAFSSSAVPTLPGCCQLPNARAATWGPGDTR
AHTVVMCLDGECVRCQRYQARRPEGGRWEREEAPALPAPSLTRGLRKEQRVSWGQTHSIH
APAGSTHVRTSAPSAQAHWRSGPDLLRERETWMEKSDEQIPLDIPNPPFREPCEDARISP
FYG

>gi568815593r:172668765_172870952|GENSCAN_predicted_CDS_2|1992_bp
atggggatgcccccttctgagcctccccctcgtggcccctacgtgggccctggagtgaaa
ctgaaagtcctgaagttcagggaggtggctcgccaggctcctcggcagaaggcgcgggga
ttggacggtttctttctagaagatggagcactgtcgctctctagtggccacggtgagaag
tggcaaagacctgagcagaaagacattggtcaaggtccaggtgctggacagatttacacc
ccctaccatccccccgagcgcatcctgcagaagccgcaacgaccgggaagccagactcct
gcaaatggccttgtggatctgggtaaccttgaggaggcacgtcagggtgacattgagtct
gggtctggggtcaagtctgcgtttgggggtggactggagctgagggtgtgcatgtgtgct
gatgaggatcacctaaagaagaaggcactggtgatgtggaagggagagaaaaccaaacaa
gcaaggcttccaagaaagcaggaggagatccagggcccaaaagctgtggtggctgtggtg
gggagaaggacatttgctgctgtatggcaggcagagagaagatgcaggaaggagccactg
gacagctcctccaagccaccacctaggaactgcaaacccaccctcaatcccagtacctcc
acccatcaatcaattactcaatctgtcaatcaatcaaataacaacaccctggtcctcatc
tcacgttctctccaggcccccaaacttgagagggttgacataggccatggagacctgtgc
gaatgtctgccttccctactccagtcgaccccctgcatcacccagagcaccaggccaggg
cctggagtcacgctctcctctgcccagcactgccaggaaggcagaaggaaggaggtcaga
ataaaagatggcagcagtgacccagatgactttttcatctccatcgccccgcaaaggggg
ttggccacagtgatgtgcaccaatgctgagcaaattcacaacaccgtcacttacaactgg
ggatcagttaatcagccatcagatgggccttgtcaccagtcaatagagccagcgtcaagt
caacagaggcgaggctggcaatggaagccagacccaaagggcaaagtgcccagcgacgcc
ctgcagcaggtgttggccgagcttgtgttggaggagctggagaacagccccttcctggaa
gcctgcagcctacagagcccacctcactggtcctcctcgagcattgggaatgagctattg
ggagctgtggcggggagcaaagaaaacaggccgatgacccctgcaatatgccaggtgaga
ggcaatggctctgagcagggaaataaactggaaggagaaagacgcaactggactccggaa
atatctgaaggtgggacgcaacactatcaggaaaaccactgctccctgaggacctactat
gatgccaggcctattgtcagagacctgctagacatccacgacggatgtgataggcattgg
aatgcacacaaagatactgccccttccagagccttctctagctctgctgtgcccaccctg
ccaggctgctgccagctcccaaatgccagagctgccacctggggccctggagacaccagg
gcccacactgttgtgatgtgtttggatggggagtgcgttcggtgccagcgttaccaggct
cgaaggcccgaagggggccgctgggaacgcgaggaggccccggcccttcctgctccgtcg
ctgacgcgcggcctgcggaaggaacagcgcgtctcttggggccaaacgcattccattcat
gccccggcgggcagcacgcacgtccgcacctcggctcccagcgcacaggctcactggcga
tccgggcccgacttgcttagggagagagagacttggatggagaagtcagatgagcagatc
ccgcttgatatcccgaaccctcccttccgggagccctgcgaggatgcgcgcatcagccca
ttctacggctaa

>gi568815593r:172668765_172870952|GENSCAN_predicted_peptide_3|210_aa
MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC
NTNLDAYDPYLIAVSSIYLAGKAEKQHLRTHDIINVSNRYFNPSGEPLELESRFWELRDS
IVQCELLMLRVLRFQVSFQLPHKYLLHYLAQHIAVAVLYLALQVYGVEVPAEVKAEKPWW
QVFGEDLTKPIIDNIVSDLIQIYTMDTEIP

>gi568815593r:172668765_172870952|GENSCAN_predicted_CDS_3|633_bp
atggaagccccggagggcggcggaggggggcctgcagcgcggggccccgaggggcaaccg
gcgcccgaagccagggtgcacttccgagtggcgaggttcatcatggaggcaggtgtcaag
ctagggatgaggtccattcccattgccactgcttgcaccatttaccataagttcttttgc
aataccaacctggacgcttatgacccttacctgattgccgtgtcttccatttacttggcc
ggcaaagcggaaaagcagcacctgcggactcatgacatcatcaatgtgtccaacaggtac
tttaacccgagcggtgagcccctggaattggaatcccgcttctgggagctccgggacagc
attgtgcagtgtgagcttctcatgctgagagttctgcgcttccaggtctccttccagctt
ccacacaagtacctgctccactacctggcccagcacatcgcggtggcggtgctctacctg
gccctgcaggtctacggagttgaggtgcccgccgaggttaaggctgagaagccgtggtgg
caggtgtttggtgaagaccttaccaagccaatcattgataatattgtgtctgatctcatt
cagatttataccatggacacagagatcccctaa

>gi568815593r:172668765_172870952|GENSCAN_predicted_peptide_4|600_aa
MIPCLDKPFDLNFLICKMKLLIPSQEIVTGHKEDNQPKDPELALTECHVAFTLDNTALGA
FSYRCLEFSLKHPEAGPGGYVSRPDYAGLSLAPSSVRSSISTAWIGGLGGYTFTTCRRAG
RALPLSEDLFAVLDQCSNEEAAYKRAPRARLAAKDIWAVCATRVGGAVGGTAKKPRSPEP
RVTLLSQSKSGFWFGAERPGGLAFPRKAPPCPWPREQTKSTAGPITLGALRPAMVMEVGT
LDAGGLRALLGERAAQCLLLDCRSFFAFNAGHIAGSVNVRFSTIVRRRAKGAMGLEHIVP
NAELRGRLLAGAYHAVVLLDERSAALDGAKRDGTLALAAGALCREARAAQVFFLKGGYEA
FSASCPELCSKQSTPMGLSLPLSTSVPDSAESGCSSCSTPLYDQGGPVEILPFLYLGSAY
HASRKDMLDALGITALINVSANCPNHFEGHYQYKSIPVEDNHKADISSWFNEAIDFIDSI
KNAGGRVFVHCQAGISRSATICLAYLMRTNRVKLDEAFEFVKQRRSIISPNFSFMGQLLQ
FESQVLAPHCSAEAGSPAMAVLDRGTSTTTVFNFPVSIPVHSTNSALSYLQSPITTSPSC

>gi568815593r:172668765_172870952|GENSCAN_predicted_CDS_4|1803_bp
atgattccctgcttggataaaccattcgacctcaatttcctcatctgcaaaatgaagctc
ctcatcccgagccaggaaattgtcacaggccacaaagaagataaccagcccaaggaccct
gagctggccctcacagagtgtcatgtggcttttaccctagataacacagcccttggagcg
ttctcctaccgctgcctggagttttctctgaaacacccagaggcggggcctggtggctat
gtcagtagaccagattatgctgggctctctttggctccatcctcagtcagaagcagcatc
tccactgcctggattgggggcctaggtggctacacgtttaccacttgtcgccgggcaggg
agggcgttgcccttatctgaggacctctttgctgtcctcgaccaatgttcaaatgaagag
gccgcatataaacgcgctccccgggccaggctcgctgcgaaggacatttgggctgtgtgt
gcgacgcgggtcggaggggcagtcgggggaaccgcgaagaagccgaggagcccggagccc
cgcgtgacgctcctctctcagtccaaaagcggcttttggttcggcgcagagagacccggg
ggtctagcttttcctcgaaaagcgccgccctgcccttggccccgagaacagacaaagagc
accgcagggccgatcacgctgggggcgctgaggccggccatggtcatggaagtgggcacc
ctggacgctggaggcctgcgggcgctgctgggggagcgagcggcgcaatgcctgctgctg
gactgccgctccttcttcgctttcaacgccggccacatcgccggctctgtcaacgtgcgc
ttcagcaccatcgtgcggcgccgggccaagggcgccatgggcctggagcacatcgtgccc
aacgccgagctccgcggccgcctgctggccggcgcctaccacgccgtggtgttgctggac
gagcgcagcgccgccctggacggcgccaagcgcgacggcaccctggccctggcggccggc
gcgctctgccgcgaggcgcgcgccgcgcaagtcttcttcctcaaaggaggatacgaagcg
ttttcggcttcctgcccggagctgtgcagcaaacagtcgacccccatggggctcagcctt
cccctgagtactagcgtccctgacagcgcggaatctgggtgcagttcctgcagtacccca
ctctacgatcagggtggcccggtggaaatcctgccctttctgtacctgggcagtgcgtat
cacgcttcccgcaaggacatgctggatgccttgggcatcactgccttgatcaacgtctca
gccaattgtcccaaccattttgagggtcactaccagtacaagagcatccctgtggaggac
aaccacaaggcagacatcagctcctggttcaacgaggccattgacttcatagactccatc
aagaatgctggaggaagggtgtttgtccactgccaggcaggcatttcccggtcagccacc
atctgccttgcttaccttatgaggactaatcgagtcaagctggacgaggcctttgagttt
gtgaagcagaggcgaagcatcatctctcccaacttcagcttcatgggccagctgctgcag
tttgagtcccaggtgctggctccgcactgttcggcagaggctgggagccccgccatggct
gtgctcgaccgaggcacctccaccaccaccgtgttcaacttccccgtctccatccctgtc
cactccacgaacagtgcgctgagctaccttcagagccccattacgacctctcccagctgc
tga

>gi568815593r:172668765_172870952|GENSCAN_predicted_peptide_5|209_aa
MDFGPKHLAGRGLGILGRALTSSQPCFLSVDNSGPPPMPAGGWRKVPLPSPLMTRNKLSA
DSVGEVLCYAPGQRGDPQLLSLGVCEDLTFTKTHMTPAINWKTLVFDVYGCVGTTKGEGS
NSGSDHLRCSHVIVSVPCKPRRPWFYHVHLPEDPLLPSITARASKPWAHGSAKTIFNSLA
RDQLTPSGKIFYEYLLSDYDGPEITLTLN

>gi568815593r:172668765_172870952|GENSCAN_predicted_CDS_5|630_bp
atggactttggccccaaacatctggctggcaggggccttggaatcttgggcagggccctc
acaagctcccagccctgttttctttctgtggacaacagcggacccccacccatgccagcg
gggggctggaggaaggtaccattaccatccccgctgatgacacgaaacaagttgagtgca
gacagcgtgggtgaggtcttgtgctatgcaccaggacagagaggagacccacagctgctg
tcattgggggtatgtgaggacctaacattcaccaagacacatatgactcctgccatcaac
tggaaaacactggtgtttgacgtctatggctgtgtgggtaccacaaagggagaggggtct
aactctgggtctgaccatctcaggtgttcccatgtgattgtatctgtgccctgcaaaccc
cggaggccctggttttaccacgtccacctaccagaagacccactactgccatctatcacg
gctcgggcgtcaaagccttgggctcatggttctgccaagacaatcttcaattcacttgca
agagatcaactgaccccttcagggaagatcttctacgaatatttattgagtgactatgac
gggccagaaataactctgaccttgaactga