GENSCAN 1.0	Date run:  3-Nov-116	Time: 03:07:15

Sequence gi568815576r:40761068_40961994 : 200927 bp : 41.72% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +   9584   9934  351  1  0   91   48   265 0.952  18.60
 1.02 PlyA +  10814  10819    6                               1.05

 2.07 PlyA -  11209  11204    6                               1.05
 2.06 Term -  12633  12432  202  2  1    7   38   160 0.176  -1.22
 2.05 Intr -  12952  12870   83  1  2   88  105    23 0.683   1.52
 2.04 Intr -  16068  15973   96  0  0  106   96    67 0.885   8.59
 2.03 Intr -  16306  16161  146  2  2   59   84   106 0.999   6.38
 2.02 Intr -  18058  17942  117  2  0   76  111    50 0.954   5.62
 2.01 Init -  24044  23975   70  2  1  110   77    71 0.985   9.46
 2.00 Prom -  26494  26455   40                              -9.55

 3.08 PlyA -  26868  26863    6                               1.05
 3.07 Term -  28224  27843  382  2  1   42   54   322 0.722  17.53
 3.06 Intr -  28422  28229  194  0  2   16   -3   209 0.465   1.97
 3.05 Intr -  37199  37100  100  1  1   72   45   101 0.047   3.39
 3.04 Intr -  56297  56136  162  1  0  -24  100   145 0.635   2.67
 3.03 Intr -  57992  57787  206  2  2   10   61   111 0.265  -2.32
 3.02 Intr -  58260  58128  133  2  1  -47   69   208 0.424   5.13
 3.01 Init -  58526  58468   59  2  2   69   49   101 0.713   5.14
 3.00 Prom -  61935  61896   40                              -6.75

 4.12 PlyA -  62085  62080    6                               1.05
 4.11 Term -  65599  65471  129  1  0   95   35    81 0.927   0.70
 4.10 Intr -  66162  66029  134  1  2   87  110    96 0.967  11.14
 4.09 Intr -  68607  68559   49  0  1   63   76    34 0.961  -2.97
 4.08 Intr -  69889  69773  117  1  0   68   61   199 0.946  14.94
 4.07 Intr -  71604  71502  103  2  1   47   75   140 0.999   7.86
 4.06 Intr -  74603  74493  111  1  0   63   99   165 0.999  13.68
 4.05 Intr -  74820  74736   85  1  1   91   94    80 0.999   6.86
 4.04 Intr -  79625  79559   67  2  1   92  101    84 0.972   7.66
 4.03 Intr -  83872  83772  101  2  2   44  107   156 0.935  12.01
 4.02 Intr -  87302  87227   76  2  1   76   66   138 0.953   8.57
 4.01 Init -  89812  89756   57  1  0   75  115    79 0.999  10.66
 4.00 Prom -  92482  92443   40                              -4.65

 5.00 Prom +  94506  94545   40                              -7.45
 5.01 Init +  94750  94816   67  0  1   86   60    34 0.603   1.69
 5.02 Intr +  95384  95474   91  0  1   98   54    94 0.905   5.13
 5.03 Term +  95984  96479  496  2  1   26   42   260 0.977   8.25
 5.04 PlyA +  96936  96941    6                               1.05

 6.02 PlyA -  97329  97324    6                               1.05
 6.01 Sngl - 100927  99998  930  1  0   75   32   685 0.982  57.78
 6.00 Prom - 102492 102453   40                              -3.65

 7.00 Prom + 111929 111968   40                              -4.35
 7.01 Init + 120169 120217   49  0  1   77   58    40 0.679  -0.91
 7.02 Intr + 120703 121110  408  2  0   89   87   279 0.258  21.21
 7.03 Intr + 125246 125448  203  0  2   53   80   314 0.252  25.18
 7.04 Intr + 146520 146582   63  2  0  122  100    72 0.761   9.80
 7.05 Intr + 148055 148168  114  1  0   78  102    63 0.986   6.42
 7.06 Intr + 153172 153257   86  0  2  113   91    71 0.987   7.60
 7.07 Intr + 161266 161446  181  1  1   96   75    96 0.992   8.05
 7.08 Intr + 163295 163415  121  1  1   99  107    42 0.972   6.35
 7.09 Term + 165202 165368  167  2  2   95   43   236 0.984  16.90
 7.10 PlyA + 166416 166421    6                               1.05

 8.00 Prom + 183941 183980   40                              -3.65
 8.01 Init + 190332 190409   78  2  0   93   53   139 0.688  12.01
 8.02 Intr + 192488 192566   79  1  1   99   78    64 0.470   4.71

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:40761068_40961994|GENSCAN_predicted_peptide_1|116_aa
MTIKVTTGPVGHTPCAPLDAFQANEGNICGGRSQSQGRITSLHSGGNLPLEHLRNFSWEG
VSVLVCTLQPHNCEGGSCQFLINKEHESSSEDCLQQFGFKAFVESHYSKTSKGKEV

>gi568815576r:40761068_40961994|GENSCAN_predicted_CDS_1|351_bp
atgacaattaaggtgacaacaggtccagttggccatactccctgtgcacccttggatgct
tttcaagccaatgagggtaacatttgtggtggcaggagccagagtcaagggagaatcact
tctcttcactcaggaggaaacctccctcttgagcatcttcggaatttttcatgggaaggc
gtctcagtgttggtgtgcacgcttcagccccataactgtgaaggtggcagctgtcagttt
ctcataaacaaggaacatgagagcagcagtgaggactgtctgcagcagtttggcttcaag
gcctttgtagagtcccattattccaaaacgtctaaagggaaagaggtttga

>gi568815576r:40761068_40961994|GENSCAN_predicted_peptide_2|237_aa
MPGLTEFDQAKNNSQIGQPSEPEGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYKG
IIDAFHQIIRDEGISALWNGTFPSLLLVFNPAIQFMFYEGLKRQLLKKRMKLSSLDVFII
GAVAKAIATTVTYPLQTVQSILRFGRHRLNPENRTLGSLRNILYLLHQRVRTPSEREPFY
TSVTLSVLSSVAYPMMPLSNITSAYRIGVLEKGGGSGKSDNSDDDDDNDDGGVGKSS

>gi568815576r:40761068_40961994|GENSCAN_predicted_CDS_2|714_bp
atgcctggcctaacagagtttgatcaagcaaagaacaattcgcaaattgggcagccctca
gaaccagaaggagtggttaatgtgttgctaacaactccactctgggtggtaaacaccaga
ctgaagcttcaaggagcaaaatttaggaatgaagacattgtaccaacaaactacaaaggt
atcattgatgcttttcatcagatcattcgcgatgaaggaatctcggctttatggaatggc
acatttccctcattgctgttggtcttcaatcctgccatccagttcatgttttatgaaggt
ttaaaacggcagcttttaaagaaacggatgaagctttcttccttggatgtgttcatcatt
ggtgcagtagccaaagcgattgccaccacggtgacctatcccctgcagacggtacagtca
attctgaggtttgggcgtcatagactaaacccagaaaacagaacattgggaagtcttcgg
aatattctctatcttcttcaccaacgagtaagaactccttcagaaagagaacccttctat
acttcagtcaccctgagtgtgctttcatcagtggcatatcctatgatgcctcttagcaat
ataacatctgcctatagaataggagtactggagaagggagggggcagtggaaaaagtgat
aatagtgatgatgatgatgataatgatgatggtggtgttggtaagagtagctaa

>gi568815576r:40761068_40961994|GENSCAN_predicted_peptide_3|411_aa
MEELVRARERQRTSEEPGAGSGAPFLTPLAAASVGKVWLGLRGAAPMASVLSYESLVHAV
AGAVRGMGHWRKVVGGIRGKGRDSATSWSPRDCGVESRVHTCPLRVRIFAVGSLRSGYHR
TLTHFALLARRRTGRENKIAPAKETNEGWISTAGGKLRTKSESHVKKVFLGKEVDQLGQM
LLMGQVRAFPELFAQLLLTTDDKTGKDQDHINSPFEFPEQVGKEGKKENENGWETQLLSR
WHQGSSVACHRHRRAPGAPPRQTELTPLPTPWLVRGPGTAWTVSLTQGPGCSPCLEQTAL
RSICHTPAGTKWYGASAVATSSWASPTANFPEQVVDNLPADISSGIYYGWASAGSRDGQK
MVVSIGWNPYYENTKKSMETHTMHTFKEHFYGEILSVAVVGYLRPEKNFDS

>gi568815576r:40761068_40961994|GENSCAN_predicted_CDS_3|1236_bp
atggaggaactggtcagggcccgggaacgccagagaacgtcggaggaaccgggagccggc
tccggtgctcctttcctaactccactggctgcggcatctgtgggaaaagtgtggctgggt
cttcgaggagccgcaccaatggcttccgtgctgtcctacgaaagcctggtccacgccgtg
gccggagccgtgagaggaatgggccattggcggaaagttgttggaggaattcggggtaag
ggccgagactccgccacctcctggtctcctagagactgcggggtagagagccgtgttcac
acgtgcccgctcagggtccgcatctttgccgtgggaagtttaaggtcaggctaccaccgc
acactcacacactttgctttactggcccggaggagaacaggccgagaaaataagattgca
ccagcaaaggagacaaacgaaggatggatcagtactgcaggagggaagctaagaactaag
agtgaaagccacgtgaagaaagtgtttctggggaaggaagtagaccagctgggtcagatg
ctgctgatgggtcaagtaagagcttttccagagctttttgcccagttgttgctgacaact
gatgacaagacaggcaaagatcaagaccatatcaacagccccttcgaatttccagaacag
gtagggaaagaaggaaagaaagaaaatgaaaatggttgggagacccagctcctgagtcgc
tggcatcagggatcctccgtggcgtgtcatcggcatcgtcgggcccctggtgcacccccg
cggcagacagagctcacgccccttcccaccccgtggctggtccggggtccgggcaccgcg
tggacggtgtctctgacgcagggaccgggctgcagcccatgcctcgagcagactgcatta
cgaagcatctgtcatactcctgccgggaccaagtggtatggggcttcggccgtggctaca
agcagctgggcatcccccacagctaattttcctgagcaagtggtagataatctgccagcc
gatatatccagtggcatttattatggttgggccagtgctggaagtagagatggtcagaag
atggtggtgagcataggatggaacccatactatgagaatacgaagaagtccatggaaaca
cataccatgcataccttcaaagagcacttctatggggaaatcctgagtgtggccgttgtt
ggctacctcagaccagaaaagaactttgattcatga

>gi568815576r:40761068_40961994|GENSCAN_predicted_peptide_4|342_aa
MGGKVPPATQKAKSEENTKEEKPDSKKVEEDLKADEPSSEESDLGLIVIFSTLAEIDKEG
VIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRL
AILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL
ACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQRE
EEARRQSGAQYGSFPGGFPGGMPGNFPGGMPGMGGGMPGMAGMPGLNEILSDPEVLAAMQ
DPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGGQA

>gi568815576r:40761068_40961994|GENSCAN_predicted_CDS_4|1029_bp
atgggtggtaaagtaccacctgctactcagaaagctaaatcagaagaaaataccaaggaa
gaaaaacctgatagtaagaaggtggaggaagacttaaaggcagacgaaccatcaagtgag
gaaagtgatctaggtcttattgtcattttctcgactttggcagaaattgataaagaaggt
gtgattgaaccagacactgatgctcctcaagaaatgggagatgaaaatgcggagataacg
gaggagatgatggatcaggcaaatgataaaaaagtggctgctattgaagccctaaatgat
ggtgaactccagaaagccattgacttattcacagatgccatcaagctgaatcctcgcttg
gccattttgtatgccaagagggccagtgtcttcgtcaaattacagaagccaaatgctgcc
atccgagactgtgacagagccattgaaataaatcctgattcagctcagccttacaagtgg
cgggggaaagcacacagacttctaggccactgggaagaagcagcccatgatcttgccctt
gcctgtaaattggattatgatgaagatgctagtgcaatgctgaaagaagttcaacctagg
gcacagaaaattgcagaacatcggagaaagtatgagcgaaaacgtgaagagcgagagatc
aaagaaagaatagaacgagttaagaaggctcgagaagagcatgagagagcccagagggag
gaagaagccagacgacagtcaggagctcagtatggctcttttccaggtggctttcctggg
ggaatgcctggtaattttcccggaggaatgcctggaatgggagggggcatgcctggaatg
gctggaatgcctggactcaatgaaattcttagtgatccagaggttcttgcagccatgcag
gatccagaagttatggtggctttccaggatgtggctcagaacccagcaaatatgtcaaaa
taccagagcaacccaaaggttatgaatctcatcagtaaattgtcagccaaatttggaggt
caagcgtaa

>gi568815576r:40761068_40961994|GENSCAN_predicted_peptide_5|217_aa
MPGLKKLFFSDVFGVITLPSNGGSAFPRCAERSDPAYTFSQRPEARSLCGGPWKAREPPP
PEGEVRLARFPGDAALQAVAFPVVTLFLFPTRELGRNALAALSPQAGSRCSKRPRPLRLD
SSPTVSSHGVPWRDPSWSQAIPGSADPSPGGASAPQPSVLRGFLLYRLLLERGGPSVFST
VEVFCEAEMTAERKVCHPPEGLSSKLLGLRSCGNYHT

>gi568815576r:40761068_40961994|GENSCAN_predicted_CDS_5|654_bp
atgccaggccttaagaaattatttttctcagacgtgtttggagtgataacactgccaagt
aacggaggaagcgcatttcctcggtgtgcagaacgctcggatcctgcttacacattttca
caaaggcccgaagctcgttcactttgcgggggtccatggaaggcccgcgagccgcctccg
ccggaaggggaggtgcggctggcccggtttcctggcgacgcggccctgcaggcggttgcg
ttccccgtcgttaccctctttctcttcccgacgcgtgagttaggccgtaatgccttggct
gctctcagcccccaagctggttcccgctgtagcaaacgtccgcggcctctcaggttagac
tcttctcccacggtctcctcccatggtgtcccctggagggacccaagttggtctcaggcg
atccctggttcggctgacccttctcctggtggggcctccgctccccaaccctctgtgctc
cgcggatttcttctataccggctgctcctggaaaggggtgggcccagtgtgttctctacc
gttgaggtattttgtgaagccgaaatgactgcagagagaaaagtgtgccatcccccagag
gggctgtcttccaagttactcggactccgaagttgtggcaattatcacacttaa

>gi568815576r:40761068_40961994|GENSCAN_predicted_peptide_6|309_aa
MVDYYEVLGLQRYASPEDIKKAYHKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNDE
KRDIYDKYGTEGLNGGGSHFDDECEYGFTFHKPDDVFKEIFHERDPFSFHFFEDSLEDLL
NRPGSSYGNRNRDAGYFFSTASEYPIFEKFSSYDTGYTSQGSLGHEGLTSFSSLAFDNSG
MDNYISVTTSDKIVNGRNINTKKIIESDQEREAEDNGELTFFLVNSVANEEGFAKECSWR
TQSFNNYSPNSHSSKHVSQYTFVDNDEGGISWVTSNRDPPIFSAGVKEGGKRKKKKRKEV
QKKSTKRNC

>gi568815576r:40761068_40961994|GENSCAN_predicted_CDS_6|930_bp
atggtggattactatgaagttctaggactgcaaagatatgcttcacctgaggacattaaa
aaagcttatcataaagtggcacttaaatggcaccctgataaaaatccagaaaataaagaa
gaagcagagagaaaattcaaagaagtagctgaggcatacgaggtattatcaaatgatgag
aaacgggacatttatgataaatatggcacagaaggattaaacggaggtggaagtcatttt
gatgatgaatgtgagtacggcttcacattccataagccagatgatgtttttaaagaaatt
tttcatgaaagggatccattttcttttcacttctttgaagactcgcttgaggacctgtta
aatcgtccaggaagctcctatggaaacagaaacagagatgcaggatactttttctccact
gccagtgaatatccaatttttgagaaattttcttcatatgatacaggatatacatcacag
ggttcattggggcatgaaggccttacttctttctcttccctggcttttgataatagtggg
atggacaactacatatctgttacaacttcagacaaaatcgttaatggcagaaatattaat
acaaagaaaattattgaaagtgatcaagaaagagaagctgaagataatggagagttgaca
ttttttcttgtaaatagtgtggccaatgaagagggctttgcaaaagaatgcagctggaga
acacagtcattcaacaactattcaccaaattctcacagctccaaacatgtatctcaatat
actttcgtggacaatgatgagggaggtatatcttgggttaccagcaacagagatccccct
attttctcagcaggagtcaaagagggtggtaagaggaaaaaaaagaagcgtaaagaggtg
caaaagaagtctaccaaaaggaattgttaa

>gi568815576r:40761068_40961994|GENSCAN_predicted_peptide_7|463_aa
MRFYHVGRAGLELLTSGEVTPGLSQVEYALRRHKLMSLIQKEAQGQSGTDQTVVVLSNPT
YYMSNDIPYTFHQDNNFLYLCGFQEPDSILVLQSLPGKQLPSHKAILFVPRRDPSRELWD
GPRSGTDGAIALTGVDEAYTLEEFQHLLPKMKAETNMVWYDWMRPSHAQLHSDYMQPLTE
AKAKSKNKVRGVQQLIQRLRLIKSPAEIERMQIAGKLTSQAFIETMFTSKAPVEEAFLYA
KFEFECRARGADILAYPPVVAGGNRSNTLHYVKNNQLIKDGEMVLLDGGCESSCYVSDIT
RTWPVNGRFTAPQAELYEAVLEIQRDCLALCFPGTSLENIYSMMLTLIGQKLKDLGIMKN
IKENNAFKAARKYCPHHVGHYLGMDVHDTPDMPRSLPLQPGMVITIEPGIYIPEDDKDAP
EKFRGLGVRIEDDVVVTQDSPLILSADCPKEMNDIEQICSQAS

>gi568815576r:40761068_40961994|GENSCAN_predicted_CDS_7|1392_bp
atgaggttttaccatgttggccgggctggtcttgaactcctgacctcaggggaggtaact
ccaggactatctcaggtggaatatgcacttcgcagacacaaactaatgtctctgatccag
aaggaagctcaagggcagagtgggacagaccagacagtggttgtgctctccaaccctaca
tactacatgagcaacgatattccctatactttccaccaagacaacaatttcctgtaccta
tgtggattccaagagcctgatagcattcttgtccttcagagcctccctggcaaacaatta
ccatcacacaaagccatactttttgtgcctcggcgagatcccagtcgagaactttgggat
ggtccgcgatctggcactgatggagcaatagctctaactggagtagacgaagcctatacg
ctagaagaatttcaacatcttctaccaaaaatgaaagctgagacgaacatggtttggtat
gactggatgaggccctcacatgcacagcttcactctgactatatgcagcccctgactgag
gccaaagccaagagcaagaacaaggttcggggtgttcagcagctgatacagcgcctccgg
ctgatcaagtctcctgcagaaattgaacgaatgcagattgctgggaagctgacatcacag
gctttcatagaaaccatgttcaccagtaaagcccctgtggaagaagcctttctttatgct
aagtttgaatttgaatgccgggctcgtggcgcagacattttagcctatccacctgtggtg
gctggtggtaatcggtcaaacactttgcactatgtgaaaaataatcaactcatcaaggat
ggggaaatggtgcttctggatggaggttgtgagtcttcctgctatgtgagtgacatcaca
cgtacgtggccagtcaatggcaggttcaccgcacctcaggcagaactctatgaagccgtt
ctagagatccaaagagattgtttggccctctgcttccctgggacaagcttggagaacatc
tacagcatgatgctgaccctgataggacagaagcttaaagacttggggatcatgaagaac
attaaggaaaataatgccttcaaggctgctcgaaaatactgtcctcatcatgttggccac
tacctcgggatggatgtccatgacactccagacatgccccgttccctccctctgcagcct
gggatggtaatcacaattgagcccggcatttatattccagaggatgacaaagatgcccca
gagaagtttcggggtcttggtgtacgaattgaggatgatgtagtggtgactcaggactca
cctctcatcctttctgcagactgtcccaaagagatgaatgacattgaacagatatgcagc
caggcttcttga

>gi568815576r:40761068_40961994|GENSCAN_predicted_peptide_8|53_aa
MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLX

>gi568815576r:40761068_40961994|GENSCAN_predicted_CDS_8|159_bp
atggcggcagcgatggatgtggataccccgagcggcaccaacagcggcgcgggcaagaag
cgctttgaagtgaaaaagtggaatgcagtagccctctgggcctgggatattgtggttgat
aactgtgccatctgcaggaaccacattatggatctttnn