FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0997, 273 aa
  1>>>pF1KB0997 273 - 273 aa - 273 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5961+/-0.00028; mu= 15.3676+/- 0.018
 mean_var=93.5330+/-18.713, 0's: 0 Z-trim(121.9): 10  B-trim: 1700 in 1/55
 Lambda= 0.132615
 statistics sampled from 39187 (39197) to 39187 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.46), width:  16
 Scan time:  7.320

The best scores are:                                      opt bits E(85289)
NP_001094282 (OMIM: 605398) C-X-C motif chemokine  ( 273) 1841 361.4   1e-99
NP_071342 (OMIM: 605398) C-X-C motif chemokine 16  ( 273) 1841 361.4   1e-99


>>NP_001094282 (OMIM: 605398) C-X-C motif chemokine 16 p  (273 aa)
 initn: 1841 init1: 1841 opt: 1841  Z-score: 1911.3  bits: 361.4 E(85289): 1e-99
Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)

               10        20        30        40        50        60
pF1KB0 MSGSQSEVAPSPQSPRSPEMGRDLRPGSRVLLLLLLLLLVYLTQPGNGNEGSVTGSCYCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGSQSEVAPSPQSPRSPEMGRDLRPGSRVLLLLLLLLLVYLTQPGNGNEGSVTGSCYCG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 KRISSDSPPSVQFMNRLRKHLRAYHRCLYYTRFQLLSWSVCGGNKDPWVQELMSCLDLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRISSDSPPSVQFMNRLRKHLRAYHRCLYYTRFQLLSWSVCGGNKDPWVQELMSCLDLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 CGHAYSGIVAHQKHLLPTSPPISQASEGASSDIHTPAQMLLSTLQSTQRPTLPVGSLSSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGHAYSGIVAHQKHLLPTSPPISQASEGASSDIHTPAQMLLSTLQSTQRPTLPVGSLSSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 KELTRPNETTIHTAGHSLAAGPEAGENQKQPEKNAGPTARTSATVPVLCLLAIIFILTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELTRPNETTIHTAGHSLAAGPEAGENQKQPEKNAGPTARTSATVPVLCLLAIIFILTAA
              190       200       210       220       230       240

              250       260       270   
pF1KB0 LSYVLCKRRRGQSPQSSPDLPVHYIPVAPDSNT
       :::::::::::::::::::::::::::::::::
NP_001 LSYVLCKRRRGQSPQSSPDLPVHYIPVAPDSNT
              250       260       270   

>>NP_071342 (OMIM: 605398) C-X-C motif chemokine 16 prec  (273 aa)
 initn: 1841 init1: 1841 opt: 1841  Z-score: 1911.3  bits: 361.4 E(85289): 1e-99
Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)

               10        20        30        40        50        60
pF1KB0 MSGSQSEVAPSPQSPRSPEMGRDLRPGSRVLLLLLLLLLVYLTQPGNGNEGSVTGSCYCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MSGSQSEVAPSPQSPRSPEMGRDLRPGSRVLLLLLLLLLVYLTQPGNGNEGSVTGSCYCG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 KRISSDSPPSVQFMNRLRKHLRAYHRCLYYTRFQLLSWSVCGGNKDPWVQELMSCLDLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 KRISSDSPPSVQFMNRLRKHLRAYHRCLYYTRFQLLSWSVCGGNKDPWVQELMSCLDLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 CGHAYSGIVAHQKHLLPTSPPISQASEGASSDIHTPAQMLLSTLQSTQRPTLPVGSLSSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 CGHAYSGIVAHQKHLLPTSPPISQASEGASSDIHTPAQMLLSTLQSTQRPTLPVGSLSSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 KELTRPNETTIHTAGHSLAAGPEAGENQKQPEKNAGPTARTSATVPVLCLLAIIFILTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 KELTRPNETTIHTAGHSLAAGPEAGENQKQPEKNAGPTARTSATVPVLCLLAIIFILTAA
              190       200       210       220       230       240

              250       260       270   
pF1KB0 LSYVLCKRRRGQSPQSSPDLPVHYIPVAPDSNT
       :::::::::::::::::::::::::::::::::
NP_071 LSYVLCKRRRGQSPQSSPDLPVHYIPVAPDSNT
              250       260       270   




273 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:24:21 2016 done: Fri Nov  4 20:24:22 2016
 Total Scan time:  7.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]