Result of FASTA (omim) for pF1KE0494
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0494, 218 aa
  1>>>pF1KE0494 218 - 218 aa - 218 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2113+/-0.000332; mu= 20.2034+/- 0.021
 mean_var=67.3336+/-13.811, 0's: 0 Z-trim(115.4): 49  B-trim: 465 in 1/51
 Lambda= 0.156300
 statistics sampled from 25798 (25850) to 25798 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.303), width:  16
 Scan time:  6.300

The best scores are:                                      opt bits E(85289)
XP_016884419 (OMIM: 602101) PREDICTED: claudin-5 i ( 303) 1492 345.0 7.8e-95
NP_003268 (OMIM: 602101) claudin-5 [Homo sapiens]  ( 303) 1492 345.0 7.8e-95
NP_001124333 (OMIM: 602101) claudin-5 [Homo sapien ( 303) 1492 345.0 7.8e-95
XP_016884418 (OMIM: 602101) PREDICTED: claudin-5 i ( 303) 1492 345.0 7.8e-95
NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens]  ( 217)  826 194.7   1e-49
NP_001297 (OMIM: 602910) claudin-3 [Homo sapiens]  ( 220)  813 191.8 7.7e-49
NP_067018 (OMIM: 615798) claudin-6 precursor [Homo ( 220)  807 190.4   2e-48
NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens]  ( 209)  762 180.2 2.2e-45
NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sa ( 211)  684 162.6 4.3e-40
NP_001171951 (OMIM: 609131) claudin-7 isoform 1 pr ( 211)  658 156.8 2.5e-38
NP_001298 (OMIM: 609131) claudin-7 isoform 1 precu ( 211)  658 156.8 2.5e-38
NP_001116867 (OMIM: 248190,610036) claudin-19 isof ( 211)  641 152.9 3.6e-37
NP_683763 (OMIM: 248190,610036) claudin-19 isoform ( 224)  641 153.0 3.7e-37
NP_955360 (OMIM: 611231) claudin-8 [Homo sapiens]  ( 225)  630 150.5 2.1e-36
NP_036263 (OMIM: 617005) claudin-17 [Homo sapiens] ( 224)  579 139.0   6e-33
NP_001139550 (OMIM: 605608,614035) claudin-14 [Hom ( 239)  558 134.3 1.7e-31
NP_036262 (OMIM: 605608,614035) claudin-14 [Homo s ( 239)  558 134.3 1.7e-31
NP_001139549 (OMIM: 605608,614035) claudin-14 [Hom ( 239)  558 134.3 1.7e-31
NP_001139551 (OMIM: 605608,614035) claudin-14 [Hom ( 239)  558 134.3 1.7e-31
NP_652763 (OMIM: 605608,614035) claudin-14 [Homo s ( 239)  558 134.3 1.7e-31
NP_065117 (OMIM: 300520) claudin-2 [Homo sapiens]  ( 230)  498 120.7 1.9e-27
NP_001164566 (OMIM: 300520) claudin-2 [Homo sapien ( 230)  498 120.7 1.9e-27
NP_001164563 (OMIM: 300520) claudin-2 [Homo sapien ( 230)  498 120.7 1.9e-27
NP_055158 (OMIM: 615778) claudin-15 [Homo sapiens] ( 228)  465 113.3 3.3e-25
NP_001172009 (OMIM: 615778) claudin-15 [Homo sapie ( 228)  465 113.3 3.3e-25
NP_001171952 (OMIM: 609131) claudin-7 isoform 2 pr ( 145)  454 110.6 1.4e-24
NP_001172046 (OMIM: 248190,610036) claudin-19 isof ( 218)  428 104.9   1e-22
NP_005593 (OMIM: 601326) claudin-11 isoform 1 [Hom ( 207)  331 83.0 3.9e-16
NP_057453 (OMIM: 609210) claudin-18 isoform 1 prec ( 261)  316 79.8 4.7e-15
NP_001002026 (OMIM: 609210) claudin-18 isoform 2 [ ( 261)  306 77.5 2.3e-14
NP_006571 (OMIM: 248250,603959) claudin-16 [Homo s ( 305)  237 62.0 1.2e-09
NP_919260 (OMIM: 609203) claudin-23 [Homo sapiens] ( 292)  209 55.7 9.3e-08
NP_001171985 (OMIM: 601326) claudin-11 isoform 2 p ( 123)  178 48.3 6.7e-06
NP_036261 (OMIM: 611232) claudin-12 [Homo sapiens] ( 244)  149 42.1 0.00098
NP_001172002 (OMIM: 611232) claudin-12 [Homo sapie ( 244)  149 42.1 0.00098
NP_001172001 (OMIM: 611232) claudin-12 [Homo sapie ( 244)  149 42.1 0.00098
NP_665810 (OMIM: 606405) voltage-dependent calcium ( 275)  144 41.0  0.0023


>>XP_016884419 (OMIM: 602101) PREDICTED: claudin-5 isofo  (303 aa)
 initn: 1492 init1: 1492 opt: 1492  Z-score: 1823.6  bits: 345.0 E(85289): 7.8e-95
Smith-Waterman score: 1492; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:86-303)

                                             10        20        30
pF1KE0                               MGSAALEILGLVLCLVGWGGLILACGLPMW
                                     ::::::::::::::::::::::::::::::
XP_016 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
          60        70        80        90       100       110     

               40        50        60        70        80        90
pF1KE0 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
         120       130       140       150       160       170     

              100       110       120       130       140       150
pF1KE0 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
         180       190       200       210       220       230     

              160       170       180       190       200       210
pF1KE0 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
         240       250       260       270       280       290     

               
pF1KE0 DYDKKNYV
       ::::::::
XP_016 DYDKKNYV
         300   

>>NP_003268 (OMIM: 602101) claudin-5 [Homo sapiens]       (303 aa)
 initn: 1492 init1: 1492 opt: 1492  Z-score: 1823.6  bits: 345.0 E(85289): 7.8e-95
Smith-Waterman score: 1492; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:86-303)

                                             10        20        30
pF1KE0                               MGSAALEILGLVLCLVGWGGLILACGLPMW
                                     ::::::::::::::::::::::::::::::
NP_003 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
          60        70        80        90       100       110     

               40        50        60        70        80        90
pF1KE0 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
         120       130       140       150       160       170     

              100       110       120       130       140       150
pF1KE0 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
         180       190       200       210       220       230     

              160       170       180       190       200       210
pF1KE0 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
         240       250       260       270       280       290     

               
pF1KE0 DYDKKNYV
       ::::::::
NP_003 DYDKKNYV
         300   

>>NP_001124333 (OMIM: 602101) claudin-5 [Homo sapiens]    (303 aa)
 initn: 1492 init1: 1492 opt: 1492  Z-score: 1823.6  bits: 345.0 E(85289): 7.8e-95
Smith-Waterman score: 1492; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:86-303)

                                             10        20        30
pF1KE0                               MGSAALEILGLVLCLVGWGGLILACGLPMW
                                     ::::::::::::::::::::::::::::::
NP_001 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
          60        70        80        90       100       110     

               40        50        60        70        80        90
pF1KE0 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
         120       130       140       150       160       170     

              100       110       120       130       140       150
pF1KE0 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
         180       190       200       210       220       230     

              160       170       180       190       200       210
pF1KE0 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
         240       250       260       270       280       290     

               
pF1KE0 DYDKKNYV
       ::::::::
NP_001 DYDKKNYV
         300   

>>XP_016884418 (OMIM: 602101) PREDICTED: claudin-5 isofo  (303 aa)
 initn: 1492 init1: 1492 opt: 1492  Z-score: 1823.6  bits: 345.0 E(85289): 7.8e-95
Smith-Waterman score: 1492; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:86-303)

                                             10        20        30
pF1KE0                               MGSAALEILGLVLCLVGWGGLILACGLPMW
                                     ::::::::::::::::::::::::::::::
XP_016 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
          60        70        80        90       100       110     

               40        50        60        70        80        90
pF1KE0 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
         120       130       140       150       160       170     

              100       110       120       130       140       150
pF1KE0 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
         180       190       200       210       220       230     

              160       170       180       190       200       210
pF1KE0 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
         240       250       260       270       280       290     

               
pF1KE0 DYDKKNYV
       ::::::::
XP_016 DYDKKNYV
         300   

>>NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens]       (217 aa)
 initn: 805 init1: 787 opt: 826  Z-score: 1013.7  bits: 194.7 E(85289): 1e-49
Smith-Waterman score: 826; 54.5% identity (81.5% similar) in 222 aa overlap (1-218:1-217)

               10        20        30        40        50        60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
       :.:..::.::..: ..:: : ...:.::.:.::::. ..::.::..:.::::::::::::
NP_066 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALT
       .::::::::.:::  ..:::::: : :.:::...:.:...::::::::    ::::..::
NP_066 QMQCKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEGAKARIVLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCL
       .::. :. :.:.:.:.:: :. ....::.: :  . : ::::.::.::::.::::.:: :
NP_066 AGVILLLAGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGL
              130       140       150       160       170       180

              190           200       210        
pF1KE0 LCCGAWVCTGRPDLSFP----VKYSAPRRPTATGDYDKKNYV
       :::   .:   :..  :    . :: : :  :.:  ::..::
NP_066 LCC---TCPP-PQVERPRGPRLGYSIPSRSGASG-LDKRDYV
                  190       200       210        

>>NP_001297 (OMIM: 602910) claudin-3 [Homo sapiens]       (220 aa)
 initn: 820 init1: 771 opt: 813  Z-score: 997.8  bits: 191.8 E(85289): 7.7e-49
Smith-Waterman score: 813; 55.0% identity (77.9% similar) in 222 aa overlap (3-218:2-220)

               10        20        30        40        50        60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
         : .::: : .: ..:: : :. :.::::.:.::.  ::.:.:. :.::::.:::::::
NP_001  MSMGLEITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQNIWEGLWMNCVVQSTG
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALT
       .::::::::.:::  ..:::::: : :.:::  .:.:.:.:::::.::    :::.....
NP_001 QMQCKVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDDTAKAKITIV
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE0 GGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCL
       .:::.:. .::.:::. : :: ..:.::.: :: .:: :.::.::.::::.:: ..:: :
NP_001 AGVLFLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKREMGAGLYVGWAAAALQLLGGAL
     120       130       140       150       160       170         

              190         200          210         
pF1KE0 LCCGAWVCTGRPD--LSFPVKYSAPRR--PTAT-GD-YDKKNYV
       :::.   :  :     .  : :::::   : :. :  ::.:.::
NP_001 LCCS---CPPREKKYTATKVVYSAPRSTGPGASLGTGYDRKDYV
     180          190       200       210       220

>>NP_067018 (OMIM: 615798) claudin-6 precursor [Homo sap  (220 aa)
 initn: 815 init1: 784 opt: 807  Z-score: 990.5  bits: 190.4 E(85289): 2e-48
Smith-Waterman score: 807; 52.7% identity (80.9% similar) in 220 aa overlap (1-218:1-220)

               10        20        30        40        50        60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
       :.::...:::.:: :.:: . ...:.::::.::::. ..::.::..:.::::::::::::
NP_067 MASAGMQILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALT
       .::::::::.:::  ..:::::: : :.:.:. .:.: ::::.:::::    .:::..::
NP_067 QMQCKVYDSLLALPQDLQAARALCVIALLVALFGLLVYLAGAKCTTCVEEKDSKARLVLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCL
       .:..... :.:.:.:.:: :. ..:.::.: :  .:: ::::.::.::::..::..:: :
NP_067 SGIVFVISGVLTLIPVCWTAHAIIRDFYNPLVAEAQKRELGASLYLGWAASGLLLLGGGL
              130       140       150       160       170       180

              190       200         210        
pF1KE0 LCCGAWVCTGRPDLSFPVKYS--APRRPTATGDYDKKNYV
       :::      ..    . ..::  ::    . ..:  ::::
NP_067 LCCTCPSGGSQGPSHYMARYSTSAPAISRGPSEYPTKNYV
              190       200       210       220

>>NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens]       (209 aa)
 initn: 741 init1: 720 opt: 762  Z-score: 935.9  bits: 180.2 E(85289): 2.2e-45
Smith-Waterman score: 762; 48.3% identity (82.3% similar) in 209 aa overlap (1-209:1-206)

               10        20        30        40        50        60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
       :.: .:...:..: ..:: ...: :.::::.::::.  ::::.:: :.::::.:::::::
NP_001 MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALT
       .::::::::.:::  ..::::::.. ....: ........:..::.:.    :::.. ..
NP_001 QMQCKVYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDESAKAKTMIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCL
       .::..:. ::...::. : :. ....::.: :  .:: :.::.::.::::..::..:: :
NP_001 AGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGGL
              130       140       150       160       170       180

              190       200       210        
pF1KE0 LCCGAWVCTGRPDLSFPVKYSAPRRPTATGDYDKKNYV
       :::.   :  : :  . .:::: :  .:.         
NP_001 LCCN---CPPRTDKPYSAKYSAARSAAASNYV      
                 190       200               

>>NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sapien  (211 aa)
 initn: 662 init1: 397 opt: 684  Z-score: 840.8  bits: 162.6 E(85289): 4.3e-40
Smith-Waterman score: 684; 45.3% identity (74.3% similar) in 214 aa overlap (1-212:1-210)

               10        20        30        40        50        60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
       :..:.:..::..: ..:: : :.. .::.:.. ..   ::::::. ..::::::: ::::
NP_066 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPA-KARVAL
       ..::::.::.: ::. .::.::: : ..::. .:.::. .: .:  :.    . : :.:.
NP_066 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 TGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGC
        ::...:. ::  ::   :..: .:.::::: .::. .::.: ::. ::::..: ..:: 
NP_066 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
              130       140       150       160       170       180

     180       190       200        210        
pF1KE0 LLCCGAWVCTGRPDLSFPVKYSAPR-RPTATGDYDKKNYV
       ::::.   :  :   :.:.    :.  :..  ::      
NP_066 LLCCS---CP-RKTTSYPTPRPYPKPAPSSGKDYV     
                  190       200       210      

>>NP_001171951 (OMIM: 609131) claudin-7 isoform 1 precur  (211 aa)
 initn: 663 init1: 412 opt: 658  Z-score: 809.1  bits: 156.8 E(85289): 2.5e-38
Smith-Waterman score: 658; 44.7% identity (76.2% similar) in 206 aa overlap (1-204:1-203)

               10        20        30        40        50        60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
       :....:..::. . :.:: ::.   ..:.::....   ::.:::. .:::::.::.::::
NP_001 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTG
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAK-ARVAL
        :.::.::::::::. .::.::: : ...:.:.:.::.  : .:: : .   .: ::.:.
NP_001 MMSCKMYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAM
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 TGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGC
        ::....  :: :::   :... .: .::.: .:.. :::.: :..::::..::...:: 
NP_001 GGGIIFIVAGLAALVACSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSALVILGGA
              130       140       150       160       170       180

     180       190        200       210        
pF1KE0 LLCCGAWVCTGRPDLS-FPVKYSAPRRPTATGDYDKKNYV
       :: :.   : :  . . . :  : :.              
NP_001 LLSCS---CPGNESKAGYRVPRSYPKSNSSKEYV      
                 190       200       210       




218 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:21:40 2016 done: Thu Nov  3 04:21:41 2016
 Total Scan time:  6.300 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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