GENSCAN 1.0	Date run:  3-Nov-116	Time: 04:21:59

Sequence gi568815576r:19423602_19624255 : 200654 bp : 48.32% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   7351   8520 1170  0  0   45   44   406 0.002  20.70
 1.02 Intr +   8894   9006  113  1  2    6  100   -14 0.002  -9.22
 1.03 Intr +  11135  11293  159  2  0   42  116   166 0.996  13.90
 1.04 Term +  12037  12361  325  1  1    9   38   333 0.968  14.64
 1.05 PlyA +  12452  12457    6                               1.05

 2.14 PlyA -  13129  13124    6                               1.05
 2.13 Term -  20678  20664   15  2  0  100   48    30 0.469  -1.56
 2.12 Intr -  23944  23777  168  1  0   78   85   308 0.982  29.64
 2.11 Intr -  24089  24064   26  0  2   26  109    40 0.072  -2.36
 2.10 Intr -  24789  24537  253  0  1   90   41   104 0.115   2.91
 2.09 Intr -  31229  31148   82  1  1  118  105    22 0.863   6.54
 2.08 Intr -  32167  32079   89  1  2   85  100    26 0.875   2.27
 2.07 Intr -  33033  32986   48  0  0  111   77    65 0.565   6.58
 2.06 Intr -  33317  33252   66  2  0    8   98    81 0.413   0.20
 2.05 Intr -  34538  34470   69  2  0  104   92   109 0.769  12.28
 2.04 Intr -  41686  41601   86  2  2   64  105    79 0.388   6.74
 2.03 Intr -  44402  44219  184  2  1  106  -51   202 0.081   7.46
 2.02 Intr -  48207  48086  122  1  2  102   92   118 0.911  13.81
 2.01 Init -  51989  51869  121  2  1   60   36   146 0.505   6.95
 2.00 Prom -  53600  53561   40                              -5.56

 3.00 Prom +  54467  54506   40                              -7.96
 3.01 Init +  54957  55034   78  2  0   40   29   119 0.830   2.26
 3.02 Intr +  55520  55588   69  1  0   78   92    89 0.838   7.68
 3.03 Intr +  55867  55970  104  0  2   19   71    65 0.493  -3.13
 3.04 Intr +  56337  56418   82  0  1   66   66   168 0.842  12.04
 3.05 Intr +  56557  56616   60  0  0   64  109    89 0.957   7.53
 3.06 Intr +  59089  59226  138  0  0   77   80    59 0.685   4.66
 3.07 Intr +  60261  60404  144  2  0   49  105   237 0.995  21.98
 3.08 Intr +  70621  70781  161  0  2   92  105    45 0.738   5.39
 3.09 Intr +  72380  72428   49  2  1   71  123   105 0.766  10.98
 3.10 Intr +  73785  73891  107  2  2  107   57   124 0.853  10.21
 3.11 Intr +  75500  75550   51  2  0  131   61    60 0.917   5.62
 3.12 Intr +  81761  81874  114  2  0   71  -10   208 0.161   8.86
 3.13 Intr +  83779  83916  138  1  0   69   84   100 0.233   7.28
 3.14 Intr +  84165  84263   99  0  0   76   32   142 0.958   6.63
 3.15 Intr +  84929  85090  162  2  0   72   69   201 0.968  15.69
 3.16 Intr +  91148  91286  139  2  1   72   55   210 0.988  16.57
 3.17 Intr +  91364  91447   84  1  0  135   85    29 0.969   7.32
 3.18 Intr +  92926  93044  119  0  2   51   55   243 0.831  16.56
 3.19 Intr +  93216  93292   77  0  2   53   94    74 0.717   3.66
 3.20 Term +  95616  95761  146  1  2   32   37   115 0.416  -1.13
 3.21 PlyA +  96981  96986    6                               1.05

 4.02 PlyA -  97651  97646    6                              -0.45
 4.01 Sngl - 100909  99998  912  1  0  101   55  1205 0.924 112.80
 4.00 Prom - 111363 111324   40                              -7.16

 5.09 PlyA - 111875 111870    6                               1.05
 5.08 Term - 122336 122134  203  0  2  139   42    80 0.736   6.05
 5.07 Intr - 147841 147767   75  2  0   87   77    40 0.048   2.29
 5.06 Intr - 148268 148119  150  0  0   57   95    47 0.020   2.43
 5.05 Intr - 167120 167073   48  0  0   90   99    39 0.007   3.85
 5.04 Intr - 174746 174410  337  2  1  111   47    90 0.032   2.29
 5.03 Intr - 181512 181384  129  0  0   94   55    72 0.498   5.39
 5.02 Intr - 191979 191839  141  0  0    4   39   139 0.026   1.15
 5.01 Init - 197986 197867  120  1  0   73   80    84 0.219   4.32

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +   8954   9006   53  1  2   99  100    98 0.989  10.75
S.002 Init -  24087  24064   24  0  0  104  109    35 0.809   6.86
S.003 Init + 169163 169240   78  1  0   72   98    81 0.872   6.57


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:19423602_19624255|GENSCAN_predicted_peptide_1|588_aa
GPQFPNWGHCPQIQRGSNSPSCRFRIFILPLKGHKGDFIPVSPSGPSEHFSGDADQWKAL
AGTKARSWEPGRGPSKDHRWAAEDSEQEPGAKMALAAVNPEHVLGLTSLSALRTKSAPAG
FLAWAPGTGRQGRDRQDLRAPRLDSRPRPDSGLGLPRPLRALTIVVDPGRLQELHCSAAA
AAGLRRAPGPSARPGHGATAAASSRATRPPAAARPAPSGPPRHRRPAPPSAATAATRARP
PPPPPQPHPLRRSSSGGSRATPEVTARTCQIAPAGNRSPRGLGRPGSSAGRGFGSGPGAG
APERAVRLDGGQRAGPAVATRAARRGRRGPGGVDRPSPALPRQSESDLLTSFRHSSTRAI
GHLASAGLRAGAGMRSGLRTRTNAGDEPTLQGAPRAGLWRGARPEAARVAMTASVLRSIS
LALRPTSGSEPLRKKKKVDPKKDQEAKERLKRKIRKLEKATQELIPIEDFITPLKFLDKA
RERPQVELTFEETERRALLLKKWSLYKQQERKMERDTIRAMLEAQQEALEELQLESPKLH
AEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVYTQVEFKR

>gi568815576r:19423602_19624255|GENSCAN_predicted_CDS_1|1767_bp
ggaccacaattccccaactgggggcactgtccccagatccagaggggcagtaacagtccc
tcttgcagatttcggatcttcatcctgccactgaaaggccacaagggggatttcatcccg
gtttcaccttcaggaccgtctgagcacttctcgggcgatgcagaccagtggaaggcactg
gctggcaccaaggcccgctcctgggagccaggccgcggcccctccaaggaccacaggtgg
gcagcggaagactcagagcaagagccaggggcgaagatggccctcgctgcggtcaacccg
gagcacgtgctggggctcaccagcctctccgcgctgaggacaaagtccgctcccgccggc
ttcttggcttgggcaccgggtaccgggcgtcaggggcgagacaggcaggacttgcgcgcg
ccccgactcgactccagaccccgacccgactccgggctcggcctcccgcgacccctgcgc
gcactcaccattgtggttgacccaggtcggcttcaggagcttcattgttcggccgccgcc
gccgccgggctgaggcgagcgccgggtccctcagcgcgcccgggccatggagccaccgcc
gccgcttcctcccgcgccacccgccctccggccgccgcccgccccgcgccctcagggccg
ccgcgccatcgccggcccgcgcccccctccgccgccacagccgccacccgcgctcggccg
ccgccgccgccaccacagccgcatcccctgcgccgctcctcctcaggcggctcccgggca
acgccggaagtcacggcgcgcacctgccaaatcgccccggcgggaaaccgctccccacgc
ggactgggccgccccggctcctccgctggcaggggcttcgggtcgggcccgggcgcgggc
gccccagaaagggcggttcgcctggacggcggacagcgagcggggcctgcagttgcaacc
cgggccgcccgcagaggcaggcggggcccaggtggcgtggaccgcccgtcaccagctctg
cctcgccagtctgagtccgacttattaactagcttccgtcattcatcaacacgcgctatt
gggcatcttgcgagcgccgggctccgcgccggcgccggaatgcgatccgggcttcggact
cgaacgaatgcgggggacgagccaaccctgcagggggcaccgcgggccggactgtggagg
ggcgcacgcccggaagcggcgagggtagccatgacggcctccgtgctgcgaagtatctcg
ctagccctgcgcccgactagcggatcagaacctcttcgaaaaaagaagaaggtagatcct
aaaaaagaccaagaagcaaaggagcgcttgaaaaggaagatccgaaaactggaaaaggct
actcaagagctaattcctattgaagattttattacccctctaaagttcttggataaagca
agagagcggcctcaggtggagctcacctttgaggagactgagaggagagctctgcttctg
aagaagtggtccttgtacaagcagcaagagcgtaagatggagagggacaccatcagggct
atgctagaagcccagcaggaagctctggaggaactgcaactggaatccccgaagctccat
gctgaggccatcaagcgggatcctaacctgttcccctttgagaaggaagggccacattac
acaccaccgatccctaactaccaaccccctgaaggcaggtacaatgacatcaccaaggtg
tacacacaagtggagtttaagagatag

>gi568815576r:19423602_19624255|GENSCAN_predicted_peptide_2|442_aa
MFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKSRLNITYPMLFKLTNKNSDR
MTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDIT
NPKAVYLFQISGVLLDKGECAGECVCRLENALRNFACLTTGDVIAINYNEKIYELRVMET
KPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNR
LDGKKKGVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEENRTTDIQATPT
PLTPATHRLHTFDRPMAVLGLHSQPPLQACVPWGGHSTLDPPYVMPNQSQLLCEFTSILS
GRSSKTAGAADLGDMADGSGWQPPRPCEAYRAEWKLCRSARHFLHHYYVHGERPACEQWQ
RDLASCRDWEERRNAEAQEKDE

>gi568815576r:19423602_19624255|GENSCAN_predicted_CDS_2|1329_bp
atgttcgaccaccctattcccagggtcttccaaaaccgcttctccacacagtaccgctgc
ttctctgtgtccatgctagcagggcctaatgacaggtcagatgtggagaaaggagggaag
agccgacttaacattacctatcccatgctgttcaaactgaccaataagaattcggaccgc
atgacgcattgtggcgtgctggagtttgtggctgatgagggcatctgctacctcccacac
tggatgatgcagaacttactcttggaagaaggcggcctggtccaggtggagagcgtcaac
cttcaagtggccacctactccaaattccaacctcagagccctgacttcctggacatcacc
aaccccaaagccgtgtatctttttcaaataagcggagttcttctagacaaaggagagtgt
gctggcgaatgtgtctgcagattagaaaacgcacttaggaactttgcctgtctgaccacc
ggggatgtgattgccatcaactataatgaaaagatctacgaactgcgtgtgatggagacc
aaacccgacaaggcagtgtccatcattgagtgtgacatgaacgtggactttgatgctccc
ctgggctacaaagaacccgaaagacaagtccagcatgaggagtcgacagaaggtgaagcc
gaccacagtggctatgctggagagctgggcttccgcgctttctctggatctggcaataga
ctggatggaaagaagaaaggggtagagcccagcccctccccaatcaagcctggagatatt
aaaagaggaattcccaattatgaatttaaacttggtaagataactttcatcagaaattca
cgtccccttgtcaaaaaggttgaagagaatagaactacagacatccaagccactcctacc
ccgctcacccctgctacacaccgcctccatacctttgaccggcctatggctgtactcgga
ttgcattctcagcctccacttcaagcctgcgttccctggggaggtcattcaaccctagat
ccaccatatgtcatgcccaaccaatctcagttactttgcgagttcacctccatcctgagt
ggacgctcaagcaagactgctggagctgcagatctgggagacatggcggacggcagcggc
tggcagccgccgcgcccctgcgaggcctaccgcgccgagtggaagctctgccgcagcgcc
aggcacttcctacaccactactacgtccacggcgagcggccggcctgcgaacagtggcag
cgcgacctggccagctgccgcgactgggaggagcgccggaacgccgaggcccaggagaag
gacgagtga

>gi568815576r:19423602_19624255|GENSCAN_predicted_peptide_3|706_aa
MYQQVLASIVIITEHNTAVQIRRHEPAMQRRNPADRSPSRRCRCRRAKPTASASAIEDSG
GTKLQILLQTTPKTYCKRKCCPIGASARRPAAVAMFVSDFRKEFYEVVQSQRVLLFVASD
VDALCACKILQFHYFILINCGANVDLLDILQPDEDTIFFVCDTHRPVNVVNVYNDTQIKL
LIKQDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEGSGPTDFCQIGTFLG
CGDKFLVHLLHLLFSLSLYQEIVEQTMRRRQRREWEARRRDILFDYEQYEYHGTSSAMVM
FELAWMLSKDLNDMLWYVAPAAAVWEYLLPWWAIVGLTDQWVQDKITQMKYVTDVGVLQR
HVSRHNHRNEDEENTLSVDCTRISFEPSLRLVLYQHWSLHDSLCNTSYTAARFKLWSVHG
QKRLQEFLADMGLPLKQVKQKFQAMDISLKENLREMIEESANKFGMKDMRVQTFSIHFGF
KHKFLASDVVFATMSLMESPEKDGSGTDHFIQALDSLSRSNLDKLYHGLELAKKQLRATQ
QTIASCLCTNLVISQGPFLYCSLMEGTPDVMLFSRPASLSLLSKHLLKSFVCSTKNRRCK
LLPLVMAAPLSMEHGTVTVVGIPPETDSSDRKNFFGRAFEKAAESTSSRMLHNHFDLSDS
LVLPSKATWSLLSHSLRVRRWARARRAAIRAFVCLAHEKAKLLAAA

>gi568815576r:19423602_19624255|GENSCAN_predicted_CDS_3|2121_bp
atgtaccagcaggtattagcttccatcgttatcattaccgaacacaacaccgctgtacag
attcgaaggcacgaacccgcaatgcaacgaagaaaccccgccgaccgctctcccagccgc
cgctgccgctgccgccgcgccaagccgactgcctctgcttcagccatcgaggactcgggc
ggaactaagctacaaatccttcttcaaaccacaccaaaaacctattgcaaacgtaaatgc
tgccccattggcgcgagcgccaggcgtccggccgccgtggctatgttcgtgtccgatttc
cgcaaagagttctacgaggtggtccagagccagagggtccttctcttcgtggcctcggac
gtggatgctctgtgtgcgtgcaagatccttcagtttcattattttattctcataaactgt
ggagctaatgtagacctattggatattcttcaacctgatgaagacactatattctttgtg
tgtgacacccataggccagtcaatgtcgtcaatgtatacaacgatacccagatcaaatta
ctcattaaacaagatgatgaccttgaagttcccgcctatgaagacatcttcagggatgaa
gaggaggatgaagagcattcaggaaatgacagtgatgggtcagagccttctgagaagcgc
acacggttagaagaggggtctgggcctactgacttctgccaaattggaaccttcttgggc
tgtggggataaattcctggtgcatttgctccaccttttgttctctttgtccctgtatcag
gagatagtggagcaaaccatgcggaggaggcagcggcgagagtgggaggcccggagaaga
gacatcctctttgactacgagcagtatgaatatcatgggacatcgtcagccatggtgatg
tttgagctggcttggatgctgtccaaggacctgaatgacatgctgtggtacgtagcccct
gcggcagctgtgtgggagtatttgttgccttggtgggccatcgttggactaacagaccag
tgggtgcaagacaagatcactcaaatgaaatacgtgactgatgttggtgtcctgcagcgc
cacgtttcccgccacaaccaccggaacgaggatgaggagaacacactctccgtggactgc
acacggatctcctttgagcccagcctccgcctggtgctctaccagcactggtccctccat
gacagcctgtgcaacaccagctataccgcagccaggttcaagctgtggtctgtgcatgga
cagaagcggctccaggagttccttgcagacatgggtcttcccctgaagcaggtgaagcag
aagttccaggccatggacatctccttgaaggagaatttgcgggaaatgattgaagagtct
gcaaataaatttgggatgaaggacatgcgcgtgcagactttcagcattcattttgggttc
aagcacaagtttctggccagcgacgtggtctttgccaccatgtctttgatggagagcccc
gagaaggatggctcagggacagatcacttcatccaggctctggacagcctctccaggagt
aacctggacaagctgtaccatggcctggaactcgccaagaagcagctgcgagccacccag
cagaccattgccagctgcctttgcaccaacctcgtcatctcccaggggcctttcctgtac
tgctctctcatggagggcactccagatgtcatgctgttctctaggccggcatccctaagc
ctgctcagcaaacacctgctcaagtcctttgtgtgttcgacaaagaaccggcgctgcaaa
ctgctgcccctggtgatggctgcccccctgagcatggagcatggcacagtgaccgtggtg
ggcatccccccagagaccgacagctcggacaggaagaacttttttgggagggcgtttgag
aaggcagcggaaagcaccagctcccggatgctgcacaaccattttgacctctcagactcc
ctggtgctgccctcgaaggccacctggagcctcctgtcccacagccttcgtgtcaggcgc
tgggcaagagcccgcagagcagccatccgggcttttgtgtgcttggctcatgagaaagca
aagctgttggcagccgcttag

>gi568815576r:19423602_19624255|GENSCAN_predicted_peptide_4|303_aa
MTRARIGCFGPGGRARGTESAPEPSKRVPPGRSWQTQEVRQTRGANGLGPRAGSAGAKAP
GPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMWQVTAF
LDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLLAFVAL
FVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVS
QKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATGDYDKK
NYV

>gi568815576r:19423602_19624255|GENSCAN_predicted_CDS_4|912_bp
atgacccgcgcacggattggctgcttcgggccggggggccgggcccgggggacagaatcc
gcccccgaaccttcaaagagggtaccccccggcaggagctggcagacccaggaggtgcga
cagacccgcggggcaaacggactggggccaagagccgggagcgcgggcgcaaaggcacca
gggcccgcccagggcgccgcgcagcacggccttgggggttctgcgggccttcgggtgcgc
gtctcgcctctagccatggggtccgcagcgttggagatcctgggcctggtgctgtgcctg
gtgggctgggggggtctgatcctggcgtgcgggctgcccatgtggcaggtgaccgccttc
ctggaccacaacatcgtgacggcgcagaccacctggaaggggctgtggatgtcgtgcgtg
gtgcagagcaccgggcacatgcagtgcaaagtgtacgactcggtgctggctctgagcacc
gaggtgcaggcggcgcgggcgctcaccgtgagcgccgtgctgctggcgttcgttgcgctc
ttcgtgaccctggcgggcgcgcagtgcaccacctgcgtggccccgggcccggccaaggcg
cgtgtggccctcacgggaggcgtgctctacctgttttgcgggctgctggcgctcgtgcca
ctctgctggttcgccaacattgtcgtccgcgagttttacgacccgtctgtgcccgtgtcg
cagaagtacgagctgggcgcagcgctgtacatcggctgggcggccaccgcgctgctcatg
gtaggcggctgcctcttgtgctgcggcgcctgggtctgcaccggccgtcccgacctcagc
ttccccgtgaagtactcagcgccgcggcggcccacggccaccggcgactacgacaagaag
aactacgtctga

>gi568815576r:19423602_19624255|GENSCAN_predicted_peptide_5|400_aa
MASSRASSCSLSKAPSAWPRVTEEERPSSRAALALHQIRQSGKDSLSMEALVVIWEVSHI
QDTSSQAQVHPDSRGPIVQDVAPVIMMVQTGPPQQVSLTTHSPGIILLRNVNHNDISCRG
SKADKQRGNEVPAPQQQRTNCMVAMFMQSTLCSWMPASGTPSQHTTGCMDGGLASWTWGD
KAAQQPLQSLRELFLKQVNLLWESRNTFAGTIQPLGHPNLKPPPPPRGAALARGRSGTAA
NLGLSASAPARCSFYGDPGSQIIPQLLILAATTLQAVWAHGILSSLSPRTKILLAKGTQA
SSGKLDLNGVCLRVPRISHLCSISTTIRPETLKGPAFPPKAARRSQFAASLTTVVGPPGN
CSACLTKLLSGLKLATAAIPALAGGSFRAVASAWVPLTMP

>gi568815576r:19423602_19624255|GENSCAN_predicted_CDS_5|1203_bp
atggcctcaagccgggcttcctcctgcagcctctccaaggctccttctgcctggcccaga
gtcacggaggaagagcgcccgtcttcacgggctgccctggcgctgcatcagatccgccag
tctgggaaggactccctctccatggaagctctcgttgtgatctgggaagtgtcccacatc
caagacaccagttcccaagcccaggtgcatcccgacagccgtgggccgattgttcaggac
gtggcaccagtcatcatgatggtccagacaggccctccccaacaagtgtccctcactacc
cactccccagggatcatcctactgcgaaatgtgaaccacaatgacatcagctgcagagga
agcaaagcggataaacagagaggcaatgaggtgcctgcaccccagcagcagagaaccaac
tgcatggtagccatgttcatgcaatccactctctgttcctggatgccagcatctggcacc
ccgtcccagcacacaacaggatgcatggatggtggcctggcgtcatggacctggggagac
aaggcagcccagcagcccctgcagagcctcagggaactgttcctaaaacaagtgaacttg
ctttgggaatccaggaacacctttgctggaacaatccagcccttgggacaccctaatttg
aagcccccaccaccacccaggggtgcagctttggcgaggggccggtcaggaacagctgct
aatctaggcttgtctgcctcagccccagctcgctgcagcttctacggagacccagggtca
caaataattccacagctgttaattttggcagccacgactctgcaggcagtatgggctcat
ggtatactatcttcattgtcacctcggacaaagatcctgttggccaaaggcacacaggca
tcttcaggaaaactagatttaaatggggtgtgtctccgagtcccccgaatcagtcacctg
tgctccatctccaccaccatcagacctgagactctcaaaggacctgcctttccgcccaaa
gctgcacggcggagccagtttgctgcctctctgaccactgtggtgggccctcccgggaac
tgctctgcctgcctcacaaagctgctctcagggctaaagctggcaactgcagccatccct
gcccttgccgggggctccttcagggccgtggcttctgcctgggtgcccttaactatgccc
tga