Result of FASTA (omim) for pF1KB6129
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6129, 587 aa
  1>>>pF1KB6129 587 - 587 aa - 587 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5307+/-0.000395; mu= 18.1375+/- 0.024
 mean_var=80.3943+/-16.439, 0's: 0 Z-trim(112.9): 25  B-trim: 570 in 1/52
 Lambda= 0.143041
 statistics sampled from 21966 (21983) to 21966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.258), width:  16
 Scan time: 10.450

The best scores are:                                      opt bits E(85289)
NP_057492 (OMIM: 608200) CDK5 regulatory subunit-a ( 587) 3869 808.6       0
NP_001265096 (OMIM: 608200) CDK5 regulatory subuni ( 586) 3851 804.9       0
NP_057166 (OMIM: 608200) CDK5 regulatory subunit-a ( 588) 3577 748.3 1.6e-215
NP_001265098 (OMIM: 608200) CDK5 regulatory subuni ( 560) 3376 706.8 4.7e-203
XP_011527159 (OMIM: 608200) PREDICTED: CDK5 regula ( 477) 3106 651.1 2.4e-186
XP_011527161 (OMIM: 608200) PREDICTED: CDK5 regula ( 460) 2943 617.4 3.2e-176
XP_011527160 (OMIM: 608200) PREDICTED: CDK5 regula ( 460) 2943 617.4 3.2e-176
XP_011527158 (OMIM: 608200) PREDICTED: CDK5 regula ( 483) 2882 604.8  2e-172
XP_016883365 (OMIM: 608200) PREDICTED: CDK5 regula ( 333) 2198 463.6 4.7e-130
XP_011527162 (OMIM: 608200) PREDICTED: CDK5 regula ( 333) 2198 463.6 4.7e-130
XP_016883366 (OMIM: 608200) PREDICTED: CDK5 regula ( 321) 1947 411.8 1.8e-114
NP_001265097 (OMIM: 608200) CDK5 regulatory subuni ( 510) 1938 410.1 9.3e-114
NP_060244 (OMIM: 125853,611259) threonylcarbamoyla ( 579)  258 63.4 2.4e-09
XP_016866476 (OMIM: 125853,611259) PREDICTED: thre ( 293)  246 60.7 7.7e-09
XP_016866475 (OMIM: 125853,611259) PREDICTED: thre ( 435)  246 60.8 1.1e-08
XP_011513021 (OMIM: 125853,611259) PREDICTED: thre ( 443)  246 60.8 1.1e-08
XP_011513020 (OMIM: 125853,611259) PREDICTED: thre ( 558)  231 57.8 1.1e-07


>>NP_057492 (OMIM: 608200) CDK5 regulatory subunit-assoc  (587 aa)
 initn: 3869 init1: 3869 opt: 3869  Z-score: 4316.1  bits: 808.6 E(85289):    0
Smith-Waterman score: 3869; 100.0% identity (100.0% similar) in 587 aa overlap (1-587:1-587)

               10        20        30        40        50        60
pF1KB6 MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 GQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 PHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 KLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEM
              490       500       510       520       530       540

              550       560       570       580       
pF1KB6 EDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_057 EDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
              550       560       570       580       

>>NP_001265096 (OMIM: 608200) CDK5 regulatory subunit-as  (586 aa)
 initn: 3072 init1: 3072 opt: 3851  Z-score: 4296.0  bits: 804.9 E(85289):    0
Smith-Waterman score: 3851; 99.8% identity (99.8% similar) in 587 aa overlap (1-587:1-586)

               10        20        30        40        50        60
pF1KB6 MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 GQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 PHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEV
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
NP_001 GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQ-TRAYHRLKDDVPEEV
              430       440       450       460        470         

              490       500       510       520       530       540
pF1KB6 KLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEM
     480       490       500       510       520       530         

              550       560       570       580       
pF1KB6 EDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
     540       550       560       570       580      

>>NP_057166 (OMIM: 608200) CDK5 regulatory subunit-assoc  (588 aa)
 initn: 3577 init1: 3577 opt: 3577  Z-score: 3990.4  bits: 748.3 E(85289): 1.6e-215
Smith-Waterman score: 3577; 99.8% identity (99.8% similar) in 547 aa overlap (41-587:42-588)

               20        30        40        50        60        70
pF1KB6 QRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLAAGPTFQHFLK
                                     : ::::::::::::::::::::::::::::
NP_057 SLVYERSGGPVRGSDLPAELTLRDPGHCCCCGSPERQEDGARKDFSSRLAAGPTFQHFLK
              20        30        40        50        60        70 

               80        90       100       110       120       130
pF1KB6 SASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLR
              80        90       100       110       120       130 

              140       150       160       170       180       190
pF1KB6 TSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKE
             140       150       160       170       180       190 

              200       210       220       230       240       250
pF1KB6 EILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 EILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSA
             200       210       220       230       240       250 

              260       270       280       290       300       310
pF1KB6 FVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 FVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDN
             260       270       280       290       300       310 

              320       330       340       350       360       370
pF1KB6 SEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEV
             320       330       340       350       360       370 

              380       390       400       410       420       430
pF1KB6 LQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIA
             380       390       400       410       420       430 

              440       450       460       470       480       490
pF1KB6 GFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELIT
             440       450       460       470       480       490 

              500       510       520       530       540       550
pF1KB6 IFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRV
             500       510       520       530       540       550 

              560       570       580       
pF1KB6 RAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
       :::::::::::::::::::::::::::::::::::::
NP_057 RAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
             560       570       580        

>>NP_001265098 (OMIM: 608200) CDK5 regulatory subunit-as  (560 aa)
 initn: 3376 init1: 3376 opt: 3376  Z-score: 3766.5  bits: 706.8 E(85289): 4.7e-203
Smith-Waterman score: 3376; 100.0% identity (100.0% similar) in 517 aa overlap (71-587:44-560)

               50        60        70        80        90       100
pF1KB6 CPSPERQEDGARKDFSSRLAAGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQR
                                     ::::::::::::::::::::::::::::::
NP_001 VYERSGGPVRGSDLPAELTLRDPGHCCCCGSASAPQEKLSSEVEDPPPYLMMDELLGRQR
            20        30        40        50        60        70   

              110       120       130       140       150       160
pF1KB6 KVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLH
            80        90       100       110       120       130   

              170       180       190       200       210       220
pF1KB6 QLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAES
           140       150       160       170       180       190   

              230       240       250       260       270       280
pF1KB6 GQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIA
           200       210       220       230       240       250   

              290       300       310       320       330       340
pF1KB6 SILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRF
           260       270       280       290       300       310   

              350       360       370       380       390       400
pF1KB6 AHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMR
           320       330       340       350       360       370   

              410       420       430       440       450       460
pF1KB6 RGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAY
           380       390       400       410       420       430   

              470       480       490       500       510       520
pF1KB6 SMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSA
           440       450       460       470       480       490   

              530       540       550       560       570       580
pF1KB6 TDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTL
           500       510       520       530       540       550   

              
pF1KB6 RDSSAYC
       :::::::
NP_001 RDSSAYC
           560

>>XP_011527159 (OMIM: 608200) PREDICTED: CDK5 regulatory  (477 aa)
 initn: 3106 init1: 3106 opt: 3106  Z-score: 3466.4  bits: 651.1 E(85289): 2.4e-186
Smith-Waterman score: 3106; 100.0% identity (100.0% similar) in 477 aa overlap (111-587:1-477)

               90       100       110       120       130       140
pF1KB6 SEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVI
                                     ::::::::::::::::::::::::::::::
XP_011                               MNVNDTEIAWSILQKSGYLRTSNLQEADVI
                                             10        20        30

              150       160       170       180       190       200
pF1KB6 LLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVD
               40        50        60        70        80        90

              210       220       230       240       250       260
pF1KB6 ILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDN
              100       110       120       130       140       150

              270       280       290       300       310       320
pF1KB6 MCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVP
              160       170       180       190       200       210

              330       340       350       360       370       380
pF1KB6 TNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNI
              220       230       240       250       260       270

              390       400       410       420       430       440
pF1KB6 CKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDH
              280       290       300       310       320       330

              450       460       470       480       490       500
pF1KB6 VQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKAN
              340       350       360       370       380       390

              510       520       530       540       550       560
pF1KB6 QTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLV
              400       410       420       430       440       450

              570       580       
pF1KB6 KITSASSQTLRGHVLCRTTLRDSSAYC
       :::::::::::::::::::::::::::
XP_011 KITSASSQTLRGHVLCRTTLRDSSAYC
              460       470       

>>XP_011527161 (OMIM: 608200) PREDICTED: CDK5 regulatory  (460 aa)
 initn: 2943 init1: 2943 opt: 2943  Z-score: 3284.8  bits: 617.4 E(85289): 3.2e-176
Smith-Waterman score: 2943; 99.6% identity (100.0% similar) in 453 aa overlap (135-587:8-460)

          110       120       130       140       150       160    
pF1KB6 ETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKA
                                     ..::::::::::::::::::::::::::::
XP_011                        MNFLEGREKADVILLVTCSIREKAEQTIWNRLHQLKA
                                      10        20        30       

          170       180       190       200       210       220    
pF1KB6 LKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQA
        40        50        60        70        80        90       

          230       240       250       260       270       280    
pF1KB6 ANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILE
       100       110       120       130       140       150       

          290       300       310       320       330       340    
pF1KB6 EVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLL
       160       170       180       190       200       210       

          350       360       370       380       390       400    
pF1KB6 DQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYS
       220       230       240       250       260       270       

          410       420       430       440       450       460    
pF1KB6 REAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQ
       280       290       300       310       320       330       

          470       480       490       500       510       520    
pF1KB6 KTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLC
       340       350       360       370       380       390       

          530       540       550       560       570       580    
pF1KB6 GRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSS
       400       410       420       430       440       450       

          
pF1KB6 AYC
       :::
XP_011 AYC
       460

>>XP_011527160 (OMIM: 608200) PREDICTED: CDK5 regulatory  (460 aa)
 initn: 2943 init1: 2943 opt: 2943  Z-score: 3284.8  bits: 617.4 E(85289): 3.2e-176
Smith-Waterman score: 2943; 99.6% identity (100.0% similar) in 453 aa overlap (135-587:8-460)

          110       120       130       140       150       160    
pF1KB6 ETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKA
                                     ..::::::::::::::::::::::::::::
XP_011                        MNFLEGREKADVILLVTCSIREKAEQTIWNRLHQLKA
                                      10        20        30       

          170       180       190       200       210       220    
pF1KB6 LKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQA
        40        50        60        70        80        90       

          230       240       250       260       270       280    
pF1KB6 ANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILE
       100       110       120       130       140       150       

          290       300       310       320       330       340    
pF1KB6 EVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLL
       160       170       180       190       200       210       

          350       360       370       380       390       400    
pF1KB6 DQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYS
       220       230       240       250       260       270       

          410       420       430       440       450       460    
pF1KB6 REAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQ
       280       290       300       310       320       330       

          470       480       490       500       510       520    
pF1KB6 KTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLC
       340       350       360       370       380       390       

          530       540       550       560       570       580    
pF1KB6 GRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSS
       400       410       420       430       440       450       

          
pF1KB6 AYC
       :::
XP_011 AYC
       460

>>XP_011527158 (OMIM: 608200) PREDICTED: CDK5 regulatory  (483 aa)
 initn: 2874 init1: 2874 opt: 2882  Z-score: 3216.5  bits: 604.8 E(85289): 2e-172
Smith-Waterman score: 2882; 99.5% identity (99.5% similar) in 443 aa overlap (145-587:41-483)

          120       130       140       150       160       170    
pF1KB6 DTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRV
                                     :  :::::::::::::::::::::::::::
XP_011 KSLVYERSGGPVRGSDLPAELTLRDPGHCCCCGREKAEQTIWNRLHQLKALKTRRPRSRV
               20        30        40        50        60        70

          180       190       200       210       220       230    
pF1KB6 PLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDET
               80        90       100       110       120       130

          240       250       260       270       280       290    
pF1KB6 YADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGL
              140       150       160       170       180       190

          300       310       320       330       340       350    
pF1KB6 KEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEM
              200       210       220       230       240       250

          360       370       380       390       400       410    
pF1KB6 RIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHH
              260       270       280       290       300       310

          420       430       440       450       460       470    
pF1KB6 IRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKD
              320       330       340       350       360       370

          480       490       500       510       520       530    
pF1KB6 DVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVI
              380       390       400       410       420       430

          540       550       560       570       580       
pF1KB6 FPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
              440       450       460       470       480   

>>XP_016883365 (OMIM: 608200) PREDICTED: CDK5 regulatory  (333 aa)
 initn: 2198 init1: 2198 opt: 2198  Z-score: 2455.9  bits: 463.6 E(85289): 4.7e-130
Smith-Waterman score: 2198; 100.0% identity (100.0% similar) in 333 aa overlap (255-587:1-333)

          230       240       250       260       270       280    
pF1KB6 ANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILE
                                     ::::::::::::::::::::::::::::::
XP_016                               MRGCDNMCSYCIVPFTRGRERSRPIASILE
                                             10        20        30

          290       300       310       320       330       340    
pF1KB6 EVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLL
               40        50        60        70        80        90

          350       360       370       380       390       400    
pF1KB6 DQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYS
              100       110       120       130       140       150

          410       420       430       440       450       460    
pF1KB6 REAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQ
              160       170       180       190       200       210

          470       480       490       500       510       520    
pF1KB6 KTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLC
              220       230       240       250       260       270

          530       540       550       560       570       580    
pF1KB6 GRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSS
              280       290       300       310       320       330

          
pF1KB6 AYC
       :::
XP_016 AYC
          

>>XP_011527162 (OMIM: 608200) PREDICTED: CDK5 regulatory  (333 aa)
 initn: 2198 init1: 2198 opt: 2198  Z-score: 2455.9  bits: 463.6 E(85289): 4.7e-130
Smith-Waterman score: 2198; 100.0% identity (100.0% similar) in 333 aa overlap (255-587:1-333)

          230       240       250       260       270       280    
pF1KB6 ANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILE
                                     ::::::::::::::::::::::::::::::
XP_011                               MRGCDNMCSYCIVPFTRGRERSRPIASILE
                                             10        20        30

          290       300       310       320       330       340    
pF1KB6 EVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLL
               40        50        60        70        80        90

          350       360       370       380       390       400    
pF1KB6 DQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYS
              100       110       120       130       140       150

          410       420       430       440       450       460    
pF1KB6 REAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQ
              160       170       180       190       200       210

          470       480       490       500       510       520    
pF1KB6 KTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLC
              220       230       240       250       260       270

          530       540       550       560       570       580    
pF1KB6 GRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSS
              280       290       300       310       320       330

          
pF1KB6 AYC
       :::
XP_011 AYC
          




587 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:47:42 2016 done: Fri Nov  4 21:47:44 2016
 Total Scan time: 10.450 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
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