Result of FASTA (ccds) for pF1KB8655
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8655, 566 aa
  1>>>pF1KB8655 566 - 566 aa - 566 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1394+/-0.00102; mu= 15.3640+/- 0.062
 mean_var=89.2117+/-17.522, 0's: 0 Z-trim(105.7): 7  B-trim: 0 in 0/51
 Lambda= 0.135789
 statistics sampled from 8549 (8552) to 8549 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.263), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS13762.1 CDC45 gene_id:8318|Hs108|chr22         ( 566) 3771 749.2 3.1e-216
CCDS54500.1 CDC45 gene_id:8318|Hs108|chr22         ( 520) 2999 597.9 9.9e-171
CCDS54499.1 CDC45 gene_id:8318|Hs108|chr22         ( 598) 2571 514.1 1.9e-145


>>CCDS13762.1 CDC45 gene_id:8318|Hs108|chr22              (566 aa)
 initn: 3771 init1: 3771 opt: 3771  Z-score: 3995.5  bits: 749.2 E(32554): 3.1e-216
Smith-Waterman score: 3771; 100.0% identity (100.0% similar) in 566 aa overlap (1-566:1-566)

               10        20        30        40        50        60
pF1KB8 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AFLEHKEQFHYFILINCGANVDLLDILQPDEDTIFFVCDTHRPVNVVNVYNDTQIKLLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AFLEHKEQFHYFILINCGANVDLLDILQPDEDTIFFVCDTHRPVNVVNVYNDTQIKLLIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RRDILFDYEQYEYHGTSSAMVMFELAWMLSKDLNDMLWWAIVGLTDQWVQDKITQMKYVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RRDILFDYEQYEYHGTSSAMVMFELAWMLSKDLNDMLWWAIVGLTDQWVQDKITQMKYVT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DVGVLQRHVSRHNHRNEDEENTLSVDCTRISFEYDLRLVLYQHWSLHDSLCNTSYTAARF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVGVLQRHVSRHNHRNEDEENTLSVDCTRISFEYDLRLVLYQHWSLHDSLCNTSYTAARF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KLWSVHGQKRLQEFLADMGLPLKQVKQKFQAMDISLKENLREMIEESANKFGMKDMRVQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLWSVHGQKRLQEFLADMGLPLKQVKQKFQAMDISLKENLREMIEESANKFGMKDMRVQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 FSIHFGFKHKFLASDVVFATMSLMESPEKDGSGTDHFIQALDSLSRSNLDKLYHGLELAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FSIHFGFKHKFLASDVVFATMSLMESPEKDGSGTDHFIQALDSLSRSNLDKLYHGLELAK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 KQLRATQQTIASCLCTNLVISQGPFLYCSLMEGTPDVMLFSRPASLSLLSKHLLKSFVCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KQLRATQQTIASCLCTNLVISQGPFLYCSLMEGTPDVMLFSRPASLSLLSKHLLKSFVCS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 TKNRRCKLLPLVMAAPLSMEHGTVTVVGIPPETDSSDRKNFFGRAFEKAAESTSSRMLHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TKNRRCKLLPLVMAAPLSMEHGTVTVVGIPPETDSSDRKNFFGRAFEKAAESTSSRMLHN
              490       500       510       520       530       540

              550       560      
pF1KB8 HFDLSVIELKAEDRSKFLDALISLLS
       ::::::::::::::::::::::::::
CCDS13 HFDLSVIELKAEDRSKFLDALISLLS
              550       560      

>>CCDS54500.1 CDC45 gene_id:8318|Hs108|chr22              (520 aa)
 initn: 2999 init1: 2999 opt: 2999  Z-score: 3178.7  bits: 597.9 E(32554): 9.9e-171
Smith-Waterman score: 3347; 91.9% identity (91.9% similar) in 566 aa overlap (1-566:1-520)

               10        20        30        40        50        60
pF1KB8 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AFLEHKEQFHYFILINCGANVDLLDILQPDEDTIFFVCDTHRPVNVVNVYNDTQIKLLIK
       ::::::::                                              ::::::
CCDS54 AFLEHKEQ----------------------------------------------IKLLIK
                                                             70    

              130       140       150       160       170       180
pF1KB8 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
           80        90       100       110       120       130    

              190       200       210       220       230       240
pF1KB8 RRDILFDYEQYEYHGTSSAMVMFELAWMLSKDLNDMLWWAIVGLTDQWVQDKITQMKYVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RRDILFDYEQYEYHGTSSAMVMFELAWMLSKDLNDMLWWAIVGLTDQWVQDKITQMKYVT
          140       150       160       170       180       190    

              250       260       270       280       290       300
pF1KB8 DVGVLQRHVSRHNHRNEDEENTLSVDCTRISFEYDLRLVLYQHWSLHDSLCNTSYTAARF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DVGVLQRHVSRHNHRNEDEENTLSVDCTRISFEYDLRLVLYQHWSLHDSLCNTSYTAARF
          200       210       220       230       240       250    

              310       320       330       340       350       360
pF1KB8 KLWSVHGQKRLQEFLADMGLPLKQVKQKFQAMDISLKENLREMIEESANKFGMKDMRVQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KLWSVHGQKRLQEFLADMGLPLKQVKQKFQAMDISLKENLREMIEESANKFGMKDMRVQT
          260       270       280       290       300       310    

              370       380       390       400       410       420
pF1KB8 FSIHFGFKHKFLASDVVFATMSLMESPEKDGSGTDHFIQALDSLSRSNLDKLYHGLELAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FSIHFGFKHKFLASDVVFATMSLMESPEKDGSGTDHFIQALDSLSRSNLDKLYHGLELAK
          320       330       340       350       360       370    

              430       440       450       460       470       480
pF1KB8 KQLRATQQTIASCLCTNLVISQGPFLYCSLMEGTPDVMLFSRPASLSLLSKHLLKSFVCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KQLRATQQTIASCLCTNLVISQGPFLYCSLMEGTPDVMLFSRPASLSLLSKHLLKSFVCS
          380       390       400       410       420       430    

              490       500       510       520       530       540
pF1KB8 TKNRRCKLLPLVMAAPLSMEHGTVTVVGIPPETDSSDRKNFFGRAFEKAAESTSSRMLHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TKNRRCKLLPLVMAAPLSMEHGTVTVVGIPPETDSSDRKNFFGRAFEKAAESTSSRMLHN
          440       450       460       470       480       490    

              550       560      
pF1KB8 HFDLSVIELKAEDRSKFLDALISLLS
       ::::::::::::::::::::::::::
CCDS54 HFDLSVIELKAEDRSKFLDALISLLS
          500       510       520

>>CCDS54499.1 CDC45 gene_id:8318|Hs108|chr22              (598 aa)
 initn: 3757 init1: 2555 opt: 2571  Z-score: 2724.6  bits: 514.1 E(32554): 1.9e-145
Smith-Waterman score: 3697; 94.6% identity (94.6% similar) in 598 aa overlap (1-566:1-598)

               10        20        30        40        50        60
pF1KB8 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AFLEHKEQFHYFILINCGANVDLLDILQPDEDTIFFVCDTHRPVNVVNVYNDTQIKLLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AFLEHKEQFHYFILINCGANVDLLDILQPDEDTIFFVCDTHRPVNVVNVYNDTQIKLLIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
              130       140       150       160       170       180

                                              190       200        
pF1KB8 --------------------------------RRDILFDYEQYEYHGTSSAMVMFELAWM
                                       ::::::::::::::::::::::::::::
CCDS54 SGSGSEPVAAALEKSSRLFAGPMSDRTAPRSPRRDILFDYEQYEYHGTSSAMVMFELAWM
              190       200       210       220       230       240

      210       220       230       240       250       260        
pF1KB8 LSKDLNDMLWWAIVGLTDQWVQDKITQMKYVTDVGVLQRHVSRHNHRNEDEENTLSVDCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LSKDLNDMLWWAIVGLTDQWVQDKITQMKYVTDVGVLQRHVSRHNHRNEDEENTLSVDCT
              250       260       270       280       290       300

      270       280       290       300       310       320        
pF1KB8 RISFEYDLRLVLYQHWSLHDSLCNTSYTAARFKLWSVHGQKRLQEFLADMGLPLKQVKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RISFEYDLRLVLYQHWSLHDSLCNTSYTAARFKLWSVHGQKRLQEFLADMGLPLKQVKQK
              310       320       330       340       350       360

      330       340       350       360       370       380        
pF1KB8 FQAMDISLKENLREMIEESANKFGMKDMRVQTFSIHFGFKHKFLASDVVFATMSLMESPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FQAMDISLKENLREMIEESANKFGMKDMRVQTFSIHFGFKHKFLASDVVFATMSLMESPE
              370       380       390       400       410       420

      390       400       410       420       430       440        
pF1KB8 KDGSGTDHFIQALDSLSRSNLDKLYHGLELAKKQLRATQQTIASCLCTNLVISQGPFLYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KDGSGTDHFIQALDSLSRSNLDKLYHGLELAKKQLRATQQTIASCLCTNLVISQGPFLYC
              430       440       450       460       470       480

      450       460       470       480       490       500        
pF1KB8 SLMEGTPDVMLFSRPASLSLLSKHLLKSFVCSTKNRRCKLLPLVMAAPLSMEHGTVTVVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SLMEGTPDVMLFSRPASLSLLSKHLLKSFVCSTKNRRCKLLPLVMAAPLSMEHGTVTVVG
              490       500       510       520       530       540

      510       520       530       540       550       560      
pF1KB8 IPPETDSSDRKNFFGRAFEKAAESTSSRMLHNHFDLSVIELKAEDRSKFLDALISLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IPPETDSSDRKNFFGRAFEKAAESTSSRMLHNHFDLSVIELKAEDRSKFLDALISLLS
              550       560       570       580       590        




566 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:56:19 2016 done: Sat Nov  5 21:56:20 2016
 Total Scan time:  3.380 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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