Result of FASTA (omim) for pF1KB6723
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6723, 91 aa
  1>>>pF1KB6723 91 - 91 aa - 91 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8184+/-0.000272; mu= 11.0919+/- 0.017
 mean_var=51.4312+/- 9.985, 0's: 0 Z-trim(119.0): 68  B-trim: 0 in 0/55
 Lambda= 0.178838
 statistics sampled from 32521 (32591) to 32521 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.382), width:  16
 Scan time:  3.840

The best scores are:                                      opt bits E(85289)
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso (  91)  609 163.9 3.3e-41
NP_001265665 (OMIM: 187011) C-C motif chemokine 5  ( 154)  423 116.0 1.4e-26
NP_066286 (OMIM: 601395,609423) C-C motif chemokin (  93)  338 94.0 3.7e-20
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- (  93)  338 94.0 3.7e-20
NP_002974 (OMIM: 182283,609423) C-C motif chemokin (  92)  332 92.4 1.1e-19
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre (  92)  325 90.6 3.7e-19
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik (  92)  308 86.2 7.8e-18
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- (  87)  272 76.9 4.7e-15
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is (  93)  248 70.8 3.6e-13
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr (  89)  246 70.2   5e-13
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre (  97)  238 68.2 2.2e-12
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c (  94)  231 66.4 7.6e-12
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr (  94)  231 66.4 7.6e-12
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148)  231 66.5 1.1e-11
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre (  99)  225 64.8 2.3e-11
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109)  222 64.1 4.3e-11
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120)  219 63.3 8.1e-11
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120)  219 63.3 8.1e-11
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre (  99)  217 62.8 9.8e-11
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr (  98)  215 62.3 1.4e-10
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- (  96)  207 60.2 5.7e-10
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c (  93)  201 58.6 1.6e-09
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr (  93)  201 58.6 1.6e-09
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103)  199 58.1 2.5e-09
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- (  64)  195 57.0 3.4e-09
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- (  64)  195 57.0 3.4e-09
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103)  196 57.4 4.3e-09
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- (  86)  195 57.1 4.4e-09
NP_002973 (OMIM: 158105,182940,607948,609423) C-C  (  99)  194 56.8   6e-09
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113)  190 55.8 1.4e-08
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137)  189 55.6 1.9e-08
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120)  188 55.3 2.1e-08
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr (  98)  184 54.3 3.5e-08
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  167 49.9 8.7e-07
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119)  167 49.9 8.7e-07
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  167 49.9 8.7e-07
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr (  94)  165 49.3   1e-06
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122)  165 49.4 1.3e-06
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123)  165 49.4 1.3e-06
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114)  153 46.3   1e-05
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114)  153 46.3   1e-05
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134)  153 46.3 1.2e-05
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145)  153 46.3 1.3e-05
NP_000575 (OMIM: 146930) interleukin-8 precursor [ (  99)  151 45.7 1.3e-05
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114)  151 45.8 1.5e-05
NP_954637 (OMIM: 600835,609423) stromal cell-deriv (  89)  147 44.7 2.4e-05
NP_000600 (OMIM: 600835,609423) stromal cell-deriv (  93)  147 44.7 2.5e-05
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119)  147 44.7 3.1e-05
NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140)  147 44.8 3.6e-05
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre (  96)  141 43.2 7.6e-05


>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform  (91 aa)
 initn: 609 init1: 609 opt: 609  Z-score: 860.9  bits: 163.9 E(85289): 3.3e-41
Smith-Waterman score: 609; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
               10        20        30        40        50        60

               70        80        90 
pF1KB6 AVVFVTRKNRQVCANPEKKWVREYINSLEMS
       :::::::::::::::::::::::::::::::
NP_002 AVVFVTRKNRQVCANPEKKWVREYINSLEMS
               70        80        90 

>>NP_001265665 (OMIM: 187011) C-C motif chemokine 5 isof  (154 aa)
 initn: 423 init1: 423 opt: 423  Z-score: 598.0  bits: 116.0 E(85289): 1.4e-26
Smith-Waterman score: 423; 95.5% identity (97.0% similar) in 67 aa overlap (1-67:1-67)

               10        20        30        40        50        60
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
               10        20        30        40        50        60

               70        80        90                              
pF1KB6 AVVFVTRKNRQVCANPEKKWVREYINSLEMS                             
       :::  .:                                                     
NP_001 AVVHRSRMPKREGQQVWQDFLYDSRLNKGKLCHPKEPPSVCQPREEMGSGVHQLFGDELG
               70        80        90       100       110       120

>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3-  (93 aa)
 initn: 339 init1: 260 opt: 338  Z-score: 482.9  bits: 94.0 E(85289): 3.7e-20
Smith-Waterman score: 338; 48.9% identity (83.7% similar) in 92 aa overlap (1-91:1-92)

               10        20        30         40        50         
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYTSGKCSN
       :.::.:::::.: . :::  . ..: ..:: : :::.: .: .:.  : .:: ::..::.
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
               10        20        30        40        50        60

      60        70        80        90  
pF1KB6 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS 
       :.:.:.:...:::::.: ..::..:...::.: 
NP_066 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
               70        80        90   

>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like  (93 aa)
 initn: 339 init1: 260 opt: 338  Z-score: 482.9  bits: 94.0 E(85289): 3.7e-20
Smith-Waterman score: 338; 48.9% identity (83.7% similar) in 92 aa overlap (1-91:1-92)

               10        20        30         40        50         
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYTSGKCSN
       :.::.:::::.: . :::  . ..: ..:: : :::.: .: .:.  : .:: ::..::.
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
               10        20        30        40        50        60

      60        70        80        90  
pF1KB6 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS 
       :.:.:.:...:::::.: ..::..:...::.: 
NP_001 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
               70        80        90   

>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3   (92 aa)
 initn: 344 init1: 323 opt: 332  Z-score: 474.6  bits: 92.4 E(85289): 1.1e-19
Smith-Waterman score: 332; 49.5% identity (81.3% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
       :.::.:::::.: . :::   :::  ..  : :::.: .: .:.  : .:: ::..::.:
NP_002 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
               10        20        30        40        50        60

               70        80        90  
pF1KB6 AVVFVTRKNRQVCANPEKKWVREYINSLEMS 
       .:.:.:...:::::.: ..::..:...::.: 
NP_002 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
               70        80        90  

>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs  (92 aa)
 initn: 359 init1: 260 opt: 325  Z-score: 464.8  bits: 90.6 E(85289): 3.7e-19
Smith-Waterman score: 325; 45.7% identity (83.7% similar) in 92 aa overlap (1-91:1-92)

               10        20        30         40        50         
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYTSGKCSN
       ::. ...:.......:.:.:: ..:..::  : :::.: :: :::  . .:. ::. ::.
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90 
pF1KB6 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS
       ::::: :....::::.: ..::.::. .::..
NP_002 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN
               70        80        90  

>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr  (92 aa)
 initn: 349 init1: 259 opt: 308  Z-score: 441.1  bits: 86.2 E(85289): 7.8e-18
Smith-Waterman score: 308; 44.6% identity (82.6% similar) in 92 aa overlap (1-91:1-92)

               10        20        30         40        50         
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYTSGKCSN
       ::. ...:.......:.:. : ..:..::  : :::.: :: :::  . .:. ::. ::.
NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90 
pF1KB6 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS
       ::::: :....::::.: ..::.::. .::..
NP_996 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
               70        80        90  

>>NP_001278397 (OMIM: 610757) C-C motif chemokine 4-like  (87 aa)
 initn: 226 init1: 146 opt: 272  Z-score: 391.3  bits: 76.9 E(85289): 4.7e-15
Smith-Waterman score: 272; 42.4% identity (78.3% similar) in 92 aa overlap (1-91:1-87)

               10        20        30         40        50         
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYTSGKCSN
       ::. ...:.......:.:. : ..:..::  : :::.: :: :::  . .:. ::. ::.
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90 
pF1KB6 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS
       ::::     ..::::.: ..::.::. .::..
NP_001 PAVV-----GKQVCADPSESWVQEYVYDLELN
                    70        80       

>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor  (93 aa)
 initn: 256 init1: 219 opt: 248  Z-score: 357.4  bits: 70.8 E(85289): 3.6e-13
Smith-Waterman score: 248; 36.3% identity (72.5% similar) in 91 aa overlap (1-89:1-91)

               10        20        30          40        50        
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDTTP--CCFAYIARPLPRAHIKEYFYTSGKCS
       ::.:.::.  .:. :   .  . :   .   :  :::.: .  .:: .: .:. :...::
NP_116 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
               10        20        30        40        50        60

       60        70        80        90 
pF1KB6 NPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
       .:..::.:.....::.::  :::..::....  
NP_116 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
               70        80        90   

>>NP_002979 (OMIM: 603757) C-C motif chemokine 18 precur  (89 aa)
 initn: 249 init1: 209 opt: 246  Z-score: 354.9  bits: 70.2 E(85289): 5e-13
Smith-Waterman score: 246; 38.5% identity (73.6% similar) in 91 aa overlap (1-91:1-88)

               10        20        30        40        50        60
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
       ::  :::: :.. . :::   : .  ...   ::..: .  .:.  : .:  :: .: .:
NP_002 MKGLAAALLVLVCTMALC---SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKP
               10           20        30        40        50       

               70        80        90  
pF1KB6 AVVFVTRKNRQVCANPEKKWVREYINSLEMS 
       .:...:...::.::.:.::::..::..:... 
NP_002 GVILLTKRGRQICADPNKKWVQKYISDLKLNA
        60        70        80         




91 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:35:44 2016 done: Fri Nov  4 23:35:45 2016
 Total Scan time:  3.840 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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