Result of FASTA (omim) for
pF1KB7867
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7867, 560 aa
1>>>pF1KB7867 560 - 560 aa - 560 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.7482+/-0.000359; mu= -1.0494+/- 0.022
mean_var=256.3563+/-52.859, 0's: 0 Z-trim(122.6): 30 B-trim: 632 in 2/55
Lambda= 0.080104
statistics sampled from 40960 (40994) to 40960 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.481), width: 16
Scan time: 12.090
The best scores are: opt bits E(85289)
NP_003646 (OMIM: 603079) E3 SUMO-protein ligase CB ( 560) 3871 460.5 6.4e-129
XP_011523701 (OMIM: 603079) PREDICTED: E3 SUMO-pro ( 494) 3419 408.2 3.1e-113
NP_783640 (OMIM: 608457) chromobox protein homolog ( 251) 447 64.5 4.5e-10
XP_005261470 (OMIM: 608457) PREDICTED: chromobox p ( 158) 433 62.8 9.5e-10
XP_016884168 (OMIM: 608457) PREDICTED: chromobox p ( 250) 437 63.4 9.9e-10
NP_005180 (OMIM: 602770,613080) chromobox protein ( 532) 442 64.2 1.2e-09
XP_011523684 (OMIM: 602770,613080) PREDICTED: chro ( 586) 442 64.2 1.3e-09
XP_006724240 (OMIM: 608457) PREDICTED: chromobox p ( 192) 427 62.1 1.8e-09
XP_011528327 (OMIM: 608457) PREDICTED: chromobox p ( 165) 407 59.8 7.9e-09
XP_006724241 (OMIM: 608457) PREDICTED: chromobox p ( 166) 407 59.8 7.9e-09
XP_006724238 (OMIM: 608457) PREDICTED: chromobox p ( 258) 406 59.8 1.2e-08
XP_006724237 (OMIM: 608457) PREDICTED: chromobox p ( 259) 406 59.8 1.2e-08
XP_006724239 (OMIM: 608457) PREDICTED: chromobox p ( 200) 401 59.2 1.5e-08
NP_116036 (OMIM: 602770,613080) chromobox protein ( 211) 385 57.3 5.6e-08
>>NP_003646 (OMIM: 603079) E3 SUMO-protein ligase CBX4 [ (560 aa)
initn: 3871 init1: 3871 opt: 3871 Z-score: 2435.5 bits: 460.5 E(85289): 6.4e-129
Smith-Waterman score: 3871; 100.0% identity (100.0% similar) in 560 aa overlap (1-560:1-560)
10 20 30 40 50 60
pF1KB7 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQGHQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQGHQY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGHKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGHKEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGMMPAPKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGMMPAPKEA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 VTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAEGEARSPSHKKRAAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAEGEARSPSHKKRAAD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 ERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVSDPQPQDAGSRKLSPTKEAFGEQPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVSDPQPQDAGSRKLSPTKEAFGEQPL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 QLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 REPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 REPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 RSEAGEPPSSLQVKPETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RSEAGEPPSSLQVKPETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGNI
490 500 510 520 530 540
550 560
pF1KB7 IITDVTANCLTVTFKEYVTV
::::::::::::::::::::
NP_003 IITDVTANCLTVTFKEYVTV
550 560
>>XP_011523701 (OMIM: 603079) PREDICTED: E3 SUMO-protein (494 aa)
initn: 3419 init1: 3419 opt: 3419 Z-score: 2154.0 bits: 408.2 E(85289): 3.1e-113
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 494 aa overlap (67-560:1-494)
40 50 60 70 80 90
pF1KB7 PKYNTWEPEENILDPRLLIAFQNRERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGL
::::::::::::::::::::::::::::::
XP_011 MGYRKRGPKPKPLVVQVPTFARRSNVLTGL
10 20 30
100 110 120 130 140 150
pF1KB7 QDSSTDNRAKLDLGAQGKGQGHQYELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QDSSTDNRAKLDLGAQGKGQGHQYELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 KKHHPYQPDPKMYDLQYQGGHKEAPSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKHHPYQPDPKMYDLQYQGGHKEAPSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB7 AAGAPGKGSEKGPPNGMMPAPKEAVTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAGAPGKGSEKGPPNGMMPAPKEAVTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQA
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB7 VKIKSGEVAEGEARSPSHKKRAADERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKIKSGEVAEGEARSPSHKKRAADERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVS
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB7 DPQPQDAGSRKLSPTKEAFGEQPLQLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPQPQDAGSRKLSPTKEAFGEQPLQLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHH
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB7 HHHHAVGLNLSHVRKRCLSETHGEREPCKKRLTARSISTPTCLGGSPAAERPADLPPAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHHHAVGLNLSHVRKRCLSETHGEREPCKKRLTARSISTPTCLGGSPAAERPADLPPAAA
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB7 LPQPEVILLDSDLDEPIDLRCVKTRSEAGEPPSSLQVKPETPASAAVAVAAAAAPTTTAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPQPEVILLDSDLDEPIDLRCVKTRSEAGEPPSSLQVKPETPASAAVAVAAAAAPTTTAE
400 410 420 430 440 450
520 530 540 550 560
pF1KB7 KPPAEAQDEPAESLSEFKPFFGNIIITDVTANCLTVTFKEYVTV
::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPPAEAQDEPAESLSEFKPFFGNIIITDVTANCLTVTFKEYVTV
460 470 480 490
>>NP_783640 (OMIM: 608457) chromobox protein homolog 7 [ (251 aa)
initn: 505 init1: 426 opt: 447 Z-score: 301.9 bits: 64.5 E(85289): 4.5e-10
Smith-Waterman score: 447; 39.0% identity (63.8% similar) in 213 aa overlap (1-206:1-207)
10 20 30 40 50 60
pF1KB7 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
::: :.::.:::::::.:::.:::.:::::::.:: :::.::::::.::::::..:....
NP_783 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 ERQEQLMGYRKRGPKPKPLVVQ--VPTFARRSNVLTGLQDSSTDNRAKLDLGA-QGKGQG
:.... :::::::::: :..: : :. : . . : :. .: ..
NP_783 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 HQYELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGH
:: .: : :: .... : .:. :: : :. . .. . .
NP_783 GAPELVDKG--PLVPTLPFPLRKP----RKAHKYLRLSRKKFPPRGPNLESHSHRRELFL
130 140 150 160 170
180 190 200 210 220 230
pF1KB7 KEAPSPTCPDLGAK----SHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGM
.: :.: . ... ..::.. :.. :.:
NP_783 QEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTF
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB7 MPAPKEAVTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAEGEARSPS
NP_783 REAQAAEGFFRDRSGKF
240 250
>>XP_005261470 (OMIM: 608457) PREDICTED: chromobox prote (158 aa)
initn: 507 init1: 433 opt: 433 Z-score: 296.0 bits: 62.8 E(85289): 9.5e-10
Smith-Waterman score: 433; 69.0% identity (92.9% similar) in 84 aa overlap (1-84:1-84)
10 20 30 40 50 60
pF1KB7 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
::: :.::.:::::::.:::.:::.:::::::.:: :::.::::::.::::::..:....
XP_005 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQGHQY
:.... :::::::::: :..: :
XP_005 EERDRASGYRKRGPKPKRLLLQEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTP
70 80 90 100 110 120
>>XP_016884168 (OMIM: 608457) PREDICTED: chromobox prote (250 aa)
initn: 508 init1: 426 opt: 437 Z-score: 295.7 bits: 63.4 E(85289): 9.9e-10
Smith-Waterman score: 437; 41.9% identity (64.5% similar) in 186 aa overlap (1-183:1-180)
10 20 30 40 50 60
pF1KB7 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
::: :.::.:::::::.:::.:::.:::::::.:: :::.::::::.::::::..:....
XP_016 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 ERQEQLMGYRKRGPKPKPLVVQ--VPTFARRSNVLTGLQDSSTDNRAKLDLGA-QGKGQG
:.... :::::::::: :..: : :. : . . : :. .: ..
XP_016 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 HQYELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGH
:: .: : :: .... : .:. :: : :. . .. . .
XP_016 GAPELVDKG--PLVPTLPFPLRKP----RKAHKYLRLSRKKFPPRGPNLESHSHRRELFL
130 140 150 160 170
180 190 200 210 220 230
pF1KB7 KEAPSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGMMPAP
.: :.:
XP_016 QEPPAPDVLQAAGEWEPAAQPPEEEDADLAEGPPPWTPALPSSEVTVTDITANSITVTFR
180 190 200 210 220 230
>>NP_005180 (OMIM: 602770,613080) chromobox protein homo (532 aa)
initn: 474 init1: 329 opt: 442 Z-score: 294.2 bits: 64.2 E(85289): 1.2e-09
Smith-Waterman score: 486; 27.4% identity (55.2% similar) in 576 aa overlap (2-556:3-519)
10 20 30 40 50
pF1KB7 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQN
:: .:::.:::.: : .::.:::..:::::::::: :.:.:::::::::::::.:::.
NP_005 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 RERQEQLMGYRKRGPKPK--PL-VVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQ
.:....... :::: .:. : .. . . .:::.. :.. . .. . .......
NP_005 KEHEKEVQN-RKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSS
70 80 90 100 110
120 130 140 150 160 170
pF1KB7 GHQYELNSKKHHQYQPHSKERAGKPPPPGKS----GKYYYQLNSKKHHPYQP-DPKMYDL
. . : .: . :...: .: : :. .: . .:.. .: :..
NP_005 SDE-EDDSDLDAKRGPRGRET--HPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKAT
120 130 140 150 160 170
180 190 200 210 220
pF1KB7 QYQGGHKEAPSPTCPDLGAKSH--PPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGP
. . .. . . :::: . :: : :: :.:.: : : : : : .
NP_005 RRPVSLAKVLKTARKDLGAPASKLPPPLSAPVAG----LAALK--AHAKEACGGPSAMAT
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 PNGMMPAPKEAVTGNGIGG---KMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAE
:... : ... : :: . .::. :. . .. . ::.. : : .
NP_005 PENLASLMKGMASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATN-KCGLGLD
240 250 260 270 280
290 300 310 320 330 340
pF1KB7 GEARSPSHKKRAADERHPPADRTFKK-AAGAEEKKVE---APPKRREEEVSGVSDPQPQD
..:. ... ::... : ..:: :.:: .::. . .. : ::
NP_005 LKVRT----QKGELGMSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASRVPAGCPGPQP
290 300 310 320 330 340
350 360 370 380 390 400
pF1KB7 AGSRKLSPTKEAFGEQPLQLTTKPD--LLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHH
: ...:: ... : .. . : ::: . . :. .: : .
NP_005 APTQELS--LQVLDLQSVK-NGMPGVGLLARHATATKGVPATNPAPG------------K
350 360 370 380 390
410 420 430 440 450 460
pF1KB7 AVGLNLSHVRKRCLSETHGEREPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQP
..: .: . . .. : .:..:... :: ::..: : ..: :.
NP_005 GTGSGLIGASGATMPTDTSKSE----KLASRAVAPPT-----PASKR--DCVKGSATPSG
400 410 420 430
470 480 490 500 510
pF1KB7 EVILLDSDLDEPIDLRCVKTRSE--AGEPPSSLQVKPETPASAAVAVAAAAAPTTTAEKP
. . : . : . : : ::: :: . :.. :.: .:...:
NP_005 Q-----ESRTAPGEARKAATLPEMSAGEESSSSDSDPDS-----------ASPPSTGQNP
440 450 460 470 480
520 530 540 550 560
pF1KB7 PAEAQDEPAESLSEFKPFFGNIIITDVTANCLTVTFKEYVTV
. .: ... . . .. ....:::::: .::: ::
NP_005 SVSVQ--TSQDWKPTRSLIEHVFVTDVTANLITVTVKESPTSVGFFNLRHY
490 500 510 520 530
>>XP_011523684 (OMIM: 602770,613080) PREDICTED: chromobo (586 aa)
initn: 474 init1: 329 opt: 442 Z-score: 293.6 bits: 64.2 E(85289): 1.3e-09
Smith-Waterman score: 486; 27.4% identity (55.2% similar) in 576 aa overlap (2-556:3-519)
10 20 30 40 50
pF1KB7 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQN
:: .:::.:::.: : .::.:::..:::::::::: :.:.:::::::::::::.:::.
XP_011 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 RERQEQLMGYRKRGPKPK--PL-VVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQ
.:....... :::: .:. : .. . . .:::.. :.. . .. . .......
XP_011 KEHEKEVQN-RKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSS
70 80 90 100 110
120 130 140 150 160 170
pF1KB7 GHQYELNSKKHHQYQPHSKERAGKPPPPGKS----GKYYYQLNSKKHHPYQP-DPKMYDL
. . : .: . :...: .: : :. .: . .:.. .: :..
XP_011 SDE-EDDSDLDAKRGPRGRET--HPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKAT
120 130 140 150 160 170
180 190 200 210 220
pF1KB7 QYQGGHKEAPSPTCPDLGAKSH--PPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGP
. . .. . . :::: . :: : :: :.:.: : : : : : .
XP_011 RRPVSLAKVLKTARKDLGAPASKLPPPLSAPVAG----LAALK--AHAKEACGGPSAMAT
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 PNGMMPAPKEAVTGNGIGG---KMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAE
:... : ... : :: . .::. :. . .. . ::.. : : .
XP_011 PENLASLMKGMASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATN-KCGLGLD
240 250 260 270 280
290 300 310 320 330 340
pF1KB7 GEARSPSHKKRAADERHPPADRTFKK-AAGAEEKKVE---APPKRREEEVSGVSDPQPQD
..:. ... ::... : ..:: :.:: .::. . .. : ::
XP_011 LKVRT----QKGELGMSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASRVPAGCPGPQP
290 300 310 320 330 340
350 360 370 380 390 400
pF1KB7 AGSRKLSPTKEAFGEQPLQLTTKPD--LLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHH
: ...:: ... : .. . : ::: . . :. .: : .
XP_011 APTQELS--LQVLDLQSVK-NGMPGVGLLARHATATKGVPATNPAPG------------K
350 360 370 380 390
410 420 430 440 450 460
pF1KB7 AVGLNLSHVRKRCLSETHGEREPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQP
..: .: . . .. : .:..:... :: ::..: : ..: :.
XP_011 GTGSGLIGASGATMPTDTSKSE----KLASRAVAPPT-----PASKR--DCVKGSATPSG
400 410 420 430
470 480 490 500 510
pF1KB7 EVILLDSDLDEPIDLRCVKTRSE--AGEPPSSLQVKPETPASAAVAVAAAAAPTTTAEKP
. . : . : . : : ::: :: . :.. :.: .:...:
XP_011 Q-----ESRTAPGEARKAATLPEMSAGEESSSSDSDPDS-----------ASPPSTGQNP
440 450 460 470 480
520 530 540 550 560
pF1KB7 PAEAQDEPAESLSEFKPFFGNIIITDVTANCLTVTFKEYVTV
. .: ... . . .. ....:::::: .::: ::
XP_011 SVSVQ--TSQDWKPTRSLIEHVFVTDVTANLITVTVKESPTSVGFFNLRPLCSPLLPQET
490 500 510 520 530 540
XP_011 RWHLWLQVTVLNRAGFFMAALLLSLNCSSLACVTESQLWSLSCRG
550 560 570 580
>>XP_006724240 (OMIM: 608457) PREDICTED: chromobox prote (192 aa)
initn: 505 init1: 426 opt: 427 Z-score: 291.0 bits: 62.1 E(85289): 1.8e-09
Smith-Waterman score: 427; 66.3% identity (91.0% similar) in 89 aa overlap (1-89:1-88)
10 20 30 40 50 60
pF1KB7 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
::: :.::.:::::::.:::.:::.:::::::.:: :::.::::::.::::::..:....
XP_006 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQGHQY
:.... :::::::::: :..: : :..
XP_006 EERDRASGYRKRGPKPKRLLLQ-PRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPP
70 80 90 100 110
>>XP_011528327 (OMIM: 608457) PREDICTED: chromobox prote (165 aa)
initn: 495 init1: 333 opt: 407 Z-score: 279.5 bits: 59.8 E(85289): 7.9e-09
Smith-Waterman score: 407; 63.0% identity (84.8% similar) in 92 aa overlap (1-84:1-92)
10 20 30 40 50 60
pF1KB7 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
::: :.::.:::::::.:::.:::.:::::::.:: :::.::::::.::::::..:....
XP_011 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 --------ERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQ
:.... :::::::::: :..: :
XP_011 YGVLGTAGEERDRASGYRKRGPKPKRLLLQEPPAPDVLQAAGEWEPAAQPPEEEDADLAE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 GKGQGHQYELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQ
XP_011 GPPPWTPALPSSEVTVTDITANSITVTFREAQAAEGFFRDRSGKF
130 140 150 160
>>XP_006724241 (OMIM: 608457) PREDICTED: chromobox prote (166 aa)
initn: 466 init1: 333 opt: 407 Z-score: 279.4 bits: 59.8 E(85289): 7.9e-09
Smith-Waterman score: 407; 63.0% identity (84.8% similar) in 92 aa overlap (1-84:1-92)
10 20 30 40 50 60
pF1KB7 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
::: :.::.:::::::.:::.:::.:::::::.:: :::.::::::.::::::..:....
XP_006 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 --------ERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQ
:.... :::::::::: :..: :
XP_006 YGVLGTAGEERDRASGYRKRGPKPKRLLLQEPPAPDVLQAAGEWEPAAQPPEEEADADLA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 GKGQGHQYELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQ
XP_006 EGPPPWTPALPSSEVTVTDITANSITVTFREAQAAEGFFRDRSGKF
130 140 150 160
560 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:11:50 2016 done: Fri Nov 4 21:11:52 2016
Total Scan time: 12.090 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]