GENSCAN 1.0 Date run: 4-Nov-116 Time: 20:59:41 Sequence gi568815578f:37933948_38189872 : 255925 bp : 45.28% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 4800 4949 150 2 0 97 20 119 0.465 4.07 1.02 Term + 10034 10306 273 1 0 103 38 542 0.986 46.17 1.03 PlyA + 11383 11388 6 1.05 2.00 Prom + 24838 24877 40 -2.86 2.01 Init + 37151 37170 20 1 2 113 61 19 0.754 1.23 2.02 Intr + 38141 38187 47 2 2 122 95 14 0.575 3.55 2.03 Intr + 38591 38719 129 0 0 61 84 27 0.375 0.27 2.04 Intr + 43470 43579 110 1 2 53 94 64 0.615 3.50 2.05 Term + 44970 45089 120 2 0 39 40 102 0.472 -1.03 2.06 PlyA + 48082 48087 6 1.05 3.09 PlyA - 48201 48196 6 1.05 3.08 Term - 49692 49509 184 2 1 126 46 271 0.973 23.72 3.07 Intr - 62515 62428 88 2 1 128 94 69 0.811 10.53 3.06 Intr - 63006 62802 205 0 1 54 80 160 0.980 10.57 3.05 Intr - 65381 65241 141 2 0 109 79 32 0.915 4.95 3.04 Intr - 66572 66458 115 1 1 17 70 120 0.781 3.55 3.03 Intr - 68829 68634 196 1 1 69 70 151 0.582 9.87 3.02 Intr - 72450 72250 201 1 0 53 88 150 0.878 10.76 3.01 Init - 79869 77568 2302 0 1 77 56 970 0.967 80.24 3.00 Prom - 84115 84076 40 -5.36 4.00 Prom + 87255 87294 40 -4.16 4.01 Init + 100001 100151 151 1 1 102 92 283 0.536 30.30 4.02 Intr + 106488 106617 130 1 1 105 91 29 0.979 4.65 4.03 Intr + 114401 114534 134 2 2 64 70 131 0.876 9.19 4.04 Intr + 123585 123697 113 1 2 92 74 114 0.984 10.50 4.05 Intr + 125447 125573 127 1 1 81 94 79 0.918 8.05 4.06 Intr + 132134 132309 176 0 2 53 105 230 0.988 20.86 4.07 Intr + 145383 145414 32 2 2 99 91 8 0.476 -0.87 4.08 Intr + 149871 149985 115 0 1 58 82 100 0.621 6.85 4.09 Intr + 154360 154473 114 0 0 123 66 75 0.955 9.44 4.10 Term + 155779 155928 150 0 0 112 45 102 0.995 6.21 4.11 PlyA + 158394 158399 6 1.05 5.00 Prom + 173478 173517 40 -2.46 5.01 Init + 179033 179074 42 1 0 79 72 76 0.514 5.59 5.02 Term + 186255 186407 153 2 0 92 49 102 0.889 4.62 5.03 PlyA + 193810 193815 6 1.05 6.17 PlyA - 193993 193988 6 1.05 6.16 Term - 196422 196272 151 2 1 138 49 254 0.999 23.88 6.15 Intr - 197282 197146 137 2 2 108 95 246 0.999 26.67 6.14 Intr - 198553 198393 161 2 2 112 90 285 0.999 30.81 6.13 Intr - 204438 204166 273 1 0 91 63 550 0.832 50.31 6.12 Intr - 205707 205465 243 1 0 82 75 496 0.997 45.17 6.11 Intr - 207438 207335 104 2 2 107 100 135 0.999 16.42 6.10 Intr - 208252 208117 136 2 1 105 81 250 0.998 25.63 6.09 Intr - 209451 209338 114 1 0 81 42 54 0.577 0.52 6.08 Intr - 212947 212770 178 1 1 95 99 420 0.823 43.29 6.07 Intr - 214142 214014 129 2 0 89 101 210 0.559 23.29 6.06 Intr - 217110 216992 119 1 2 91 110 173 0.992 19.98 6.05 Intr - 222142 221900 243 2 0 130 99 281 0.995 30.87 6.04 Intr - 227652 227473 180 1 0 111 117 245 0.994 29.54 6.03 Intr - 231321 231242 80 2 2 78 96 60 0.800 4.99 6.02 Intr - 231507 231458 50 0 2 106 80 9 0.637 -0.62 6.01 Intr - 231992 231936 57 2 0 93 70 47 0.502 2.48 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Intr - 51527 51483 45 2 0 88 107 55 0.871 6.01 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815578f:37933948_38189872|GENSCAN_predicted_peptide_1|140_aa MRGSLSSWALQSPWRAGLKGFLHNVWWMKSNGLLLEWDIGPPPVGEASDEVVKVVGSNIS HKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAAPAPP PPKPGKELRKRSVDQEACSL >gi568815578f:37933948_38189872|GENSCAN_predicted_CDS_1|423_bp atgcgggggtccctttcttcgtgggctctccagtcgccctggagggctgggctgaagggc tttctgcataatgtgtggtggatgaaatccaacgggctgctcctggagtgggatattggg ccccctcccgtgggagaggcctctgatgaggtggtcaaggtggtgggcagcaacatctcc cacaagctgcgcctgtcccgggtgaagcccacggacgaaggcacctacgagtgccgcgtc atcgacttcagcgacggcaaggcccggcaccacaaggtcaaggcctacctgcgggtgcag ccaggggagaactccgtcctgcatctgcccgaagcccctcccgccgcgcccgccccgccg ccccccaagccaggcaaggagctgaggaagcgctcggtggaccaggaggcctgcagcctc tag >gi568815578f:37933948_38189872|GENSCAN_predicted_peptide_2|141_aa MVYRYTQARSGPPVAHCPSSLAYFPEISKAGAHKLEIPWVRTLVFAASGTLGTRPFSSGW EWPGKESTITQNYFLKFGLYSLLWRKGSTGTWLPIKPDAQDWSKTLFQQQQQQQQQQQQQ QQDCKKKKVKEDATETFMYGL >gi568815578f:37933948_38189872|GENSCAN_predicted_CDS_2|426_bp atggtctacagatacactcaggcaagatcaggtcctcctgttgcacattgtcccagctcc ctggcctactttccagaaatcagcaaagcaggtgctcacaagctggaaataccctgggtt aggaccctagtgtttgctgccagtgggaccttaggaaccaggcccttcagctctggctgg gagtggcctggcaaggagtccaccatcactcagaattattttctgaaatttggcctctat tccttactctggaggaaaggcagtacgggcacctggcttccaatcaagcccgacgcacag gactggagtaagaccctgtttcaacaacaacagcaacaacaacaacaacaacaacaacaa caacaagattgtaagaaaaaaaaagtcaaagaagatgccacagagacctttatgtatggc ctgtaa >gi568815578f:37933948_38189872|GENSCAN_predicted_peptide_3|1143_aa MAVFDTPEEAFGVLRPVCVQLTKTQTVENVEHLQTRLQAVSDSALQELQQYILFPLRFTL KTPGPKRERLIQSVVECLTFVLSSTCVKEQELLQELFSELSACLYSPSSQKPAAVSEELK LAVIQGLSTLMHSAYGDIILTFYEPSILPRLGFAVSLLLGLAEQEKSKQIKIAALKCLQV LLLQCDCQDHPRSLDELEQKQLGDLFASFLPGISTALTRLITGDFKQGHSIVVSSLKIFY KTVSFIMADEQLKRISKVQAKPAVEHRVAELMVYREADWVKKTGDKLTILIKKIIECVSV HPHWKVRLELVELVEDLLLKCSQSLVECAGPLLKALVGLVNDESPEIQAQCNKVLRHFAD QKVVVGNKALADILSESLHSLATSLPRLMNSQDDQGKFSTLSLLLGYLKLLGPKINFVLN SVAHLQRLSKALIQVLELDVADIKIVEERRWNSDDLNASPKTSATQPWNRIQRRYFRFFT DERIFMLLRQVCQLLGYYGNLYLLVDHFMELYHQSVVYRKQAAMILNELVTGAAGLEVED LHEKHIKTNPEELREIVTSILEEYTSQENWYLVTCLETEEMGEELMMEHPGLQAITSGEH TCQVTSFLAFSKPSPTICSMNSNIWQICIQLEGIGQFAYALGKDFCLLLMSALYPVLEKA GDQTLLISQVATSTMMDVCRACGYDSLQHLINQNSDYLVNGISLNLRHLALHPHTPKVLE VMLRNSDANLLPLVADVVQDVLATLDQFYDKRAASFVSVLHALMAALAQWFPDTGNLGHL QEQSLGEEGSHLNQRPAALEKSTTTAEDIEQFLLNYLKEKDVADGNVSDFDNEEEEQSVP PKVDENDTRPDVEPPLPLQIQIAMDVMERCIHLLSDKNLQIRLKVSAQLLLCIPRVAGLR LGVHVGGKPALAAHAGGKPALAVVLTAACDTDAGSLFSVLDVLDLCVVVLQSHKNQLLPL AHQAWPSLVHRLTRDAPLAVLRAFKVLRTLGSKCGDFLRSRFCKDVLPKLAGSLVTQAPI SARAGPVYSHTLAFKLQLAVLQGLGPLCERLDLGEGDLNKVADACLIYLSVKQPVKLQEA ARSVFLHLMKVDPDSTWFLLNELYCPVQFTPPHPSLHPVQLHGASGQQNPYTTNVLQLLK ELQ >gi568815578f:37933948_38189872|GENSCAN_predicted_CDS_3|3432_bp atggcagtttttgatactcctgaggaggcctttggtgtcttacgtccagtctgtgttcag ctcacaaagacccagacagtggagaatgtggagcatctgcagacacgactacaagctgtg agtgacagtgcccttcaggaacttcagcagtacatcctcttccctctgcgatttaccctg aagaccccaggtcccaaaagagagcgtttgatccaaagtgtggtggaatgcctcacattt gtcctttcttcaacatgtgtgaaagaacaggagcttctccaggaactcttttcagaactc tctgcttgtctgtattcacccagctcccaaaaacctgcggctgtgtccgaggagttgaaa ttggctgtgatccagggacttagcacattaatgcactcagcttatggggacatcattctg actttttatgagccctccattctgccacgtttaggatttgctgtatctttactgttaggc cttgcagaacaggagaaatcaaagcaaattaaaattgctgccttaaaatgtttacaggtt ctactcttgcagtgtgattgtcaggaccatccaaggtcattggatgaacttgaacaaaag cagctgggggatttgtttgcctcttttttacctggaatctcaactgcactgaccaggctt atcacaggagactttaaacaaggtcacagcattgtcgtatcttccctaaagatcttttac aagacagtgagcttcattatggctgatgaacagctcaaaagaatctcaaaggtccaagca aaacctgcagttgagcacagagtagcagagctgatggtttacagggaagcagattgggta aaaaagactggcgacaagttgactatccttattaaaaagataattgagtgtgtttctgtt cacccacactggaaggtgagactggaactggtagaacttgtggaggaccttcttttgaag tgcagtcaatcattggtcgaatgtgctggtccccttctgaaggccttagtgggactagta aatgatgagagtcctgaaatccaagcccagtgcaataaagttctgagacattttgcagat caaaaagtagtggtgggcaacaaagccctcgctgacatcttgtcagaaagcctgcattcc cttgccacatctcttcctcgcctaatgaactcccaagatgaccagggcaaattctctact ctttccttgttacttggttatctgaaactcttgggcccaaaaataaactttgtcctcaac tctgtggcccatctccagcggctttccaaagcactcatccaagttctagagctagacgtg gctgacatcaagattgttgaggaacggcgttggaactctgatgatctgaatgcttctcca aagacctcagccacacagccttggaaccgcatccagaggagatatttccgcttcttcact gatgagagaatcttcatgctcttgaggcaggtttgtcagctacttggttattatgggaat ctttatttgcttgtggatcactttatggaactttaccatcaatctgtggtttaccggaag caagctgccatgatccttaatgaactggttacaggggctgctgggctggaggttgaggat cttcacgaaaaacatattaaaacaaacccagaagaactgagagagattgtgacatctata cttgaagaatacacaagtcaagaaaattggtatttggttacctgtcttgaaactgaggaa atgggagaggagctgatgatggagcacccaggcctccaagccatcacgtctggtgaacac acctgccaagttacatcttttctagccttctcaaagccaagtcccactatttgctccatg aacagtaacatctggcaaatatgcattcagttggaaggaattggccagtttgcatatgca ctaggaaaagacttctgtttgctcttgatgtcagccctttatccagtactggagaaggct ggagaccaaaccctactcattagtcaggtggctaccagcaccatgatggacgtttgccgt gcttgtggctacgactccctgcagcacctgatcaatcaaaattcagactatttagtgaat gggatctctttaaatctgcgtcatctggctctgcatcctcataccccaaaggtcctggaa gtcatgctgcggaactcagatgctaacctgcttcctttggtggcagatgtggttcaagat gtcttggccaccctggaccaattttacgataagagagctgcttcctttgtcagcgttctg catgctctgatggcagcattagcccagtggttcccagacacaggtaatcttgggcacctc caagagcaaagtttaggagaagagggaagtcatttgaaccaaagaccagcagctcttgag aagagcaccaccacagctgaagacatcgaacagtttttgctgaactacctcaaagagaag gatgtggcagatggaaatgtctcggattttgataatgaagaagaggaacagtcagtccct cccaaagtggatgagaatgacacccgtccagatgtggagccaccactgccattgcagatc caaatagccatggacgtgatggaacgctgcatccacttgttgtcagataaaaatctgcaa atccgcctgaaggtcagtgcgcagctgcttctctgcattcccagagtagcaggactaagg ttgggcgtccatgtgggagggaagcctgcgctggccgcccacgcgggagggaagcctgcg ctggccgtcgtactgaccgctgcctgtgacactgatgcaggcagtctcttttcagtcttg gatgtgctggatctgtgtgtggttgttcttcagtcccacaaaaaccagctgcttcccttg gctcatcaggcctggccctcgctcgttcaccgactcacacgggacgcccccctggcagtg cttagagccttcaaggttttacgtaccctgggaagcaagtgtggtgactttcttcgcagc cggttctgcaaagatgtcctgccaaagctggctggctccctagtcacccaggcccccatc agtgccagggctggaccagtttactcgcacacgctggccttcaagttgcagctggctgtc ttacagggcctgggccccctctgtgagagactggacctaggtgagggtgacctgaataaa gtggctgatgcctgcttgatttacctcagtgtcaaacagcccgtgaaattacaagaggct gccaggagcgtcttcctccacttgatgaaggtggacccagactccacctggttcctcctg aacgagctttactgccccgtgcagttcacacctccccaccccagcctccaccctgtgcag ctgcacggggccagcgggcagcagaacccctacacgaccaacgtgctccagctgctcaag gagctgcagtga >gi568815578f:37933948_38189872|GENSCAN_predicted_peptide_4|413_aa MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE FIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEEL IKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEVFGVQIILSSSVLLSSSRRAVTP QNVSFRNVTAATRSYGSVELAGGEVQVCIRDLVSRNLELEKKCYGPVPSLSDMEEGNTST VTQQEYKQKLARVTQVRKELKSHIQSLPDLSLLPNVTGGLAPLPSAGDLFSTD >gi568815578f:37933948_38189872|GENSCAN_predicted_CDS_4|1242_bp atgtcctccttctctgagtcggcgctggagaagaagctctcggagctgagcaactctcag cagagcgtgcagaccctgtccctttggctcatccaccaccgcaagcacgcgggacccatc gtctccgtgtggcaccgcgagctccgcaaagccaaatcaaatagaaagcttacttttctg tatttagcgaatgatgtcatccaaaacagtaaaaggaaaggacctgaattcactagagaa tttgaatctgtccttgtggatgctttttctcatgttgccagagaggcagatgaaggctgt aaaaaacctttagaaagattgctgaacatctggcaagaacgaagtgtgtatggcggcgag ttcatacagcagctgaagctgtctatggaggactccaagagccctccccccaaagcaaca gaagagaagaaatctctgaaacgaacttttcagcaaattcaggaggaggaggatgacgac taccctggcagctactctcctcaggatccttctgcaggacccctcttgactgaggaacta atcaaagctttgcaggatctggaaaatgccgcatcaggggatgctactgtccgacagaaa attgcttctctgccccaggaagtgcaagatgtttctctattggaaaaaataacagacaaa gaggcagctgaacgtctttcaaaaacagtagatgaagcatgtctgttactagcagaatat aacgggcgcctggcagcagaactggaggaccgtcgccagctggctcggatgttggtggag tatacccagaatcagaaagatgttttgtcggagaaggagaaaaaactagaggtatttggc gtacagataattttgtcatccagtgtcttactcagcagctcccgccgtgctgtgacaccc cagaatgtgtcatttcgaaacgtcacagctgccactaggtcatatgggagcgtggagctg gctgggggagaggtgcaggtgtgcatcagggatctggtatcaaggaatttagaacttgaa aagaagtgttatggtccagttccctcactttcagatatggaagaagggaacacatccacg gtcacacagcaggaatacaaacagaagcttgcacgagtaacccaggtccgcaaggaactg aaatcccatattcagagcttgccagacctctcactgctgcccaacgtcacagggggctta gcccccctgccctctgctggggacctgttttcaactgactag >gi568815578f:37933948_38189872|GENSCAN_predicted_peptide_5|64_aa MPISAMLQEETEAQVSTIHFTRATRAPNETRCDIIRLEVCLQEGLTKAWVHETGKRKEKN QTHD >gi568815578f:37933948_38189872|GENSCAN_predicted_CDS_5|195_bp atgcccatcagcgccatgctgcaggaggaaaccgaggcccaggttagcaccatccacttc accagggccaccagggcccccaatgaaacaagatgcgacatcatcaggcttgaagtctgc ctccaagagggcctcacaaaagcttgggttcatgaaacagggaagaggaaagagaaaaat cagactcatgattga >gi568815578f:37933948_38189872|GENSCAN_predicted_peptide_6|784_aa LCVARGQGYLAVSGCIYVLGAPSSGRRPSLGLRSPGASRQWSHLEGLAASGRSHRPRPTM AEELVLERCDLELETNGRDHHTADLCREKLVVRRGQPFWLTLHFEGRNYEASVDSLTFSV VTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLEA STGYQGSSFVLGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWN FGQFEDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVVSGMVNCNDDQGVLLGRW DNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTGPRASVFLYIGNDDE SSVASLMHKEMEPRPRDMKGLVPVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEI QGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTPQEKSEGTYCCGPVPVRAIKEGD LSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTY KYPEGSSEEREAFTRANHLNKLAEKEETGMAMRIRVGQSMNMGSDFDVFAHITNNTAEEY VCRLLLCARTVSYNGILGPECGTKYLLNLNLEPFSEKSVPLCILYEKYRDCLTESNLIKV RALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQKRKLVAEVSLQNPLPVALEGCTFT VEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLLPLHMGLHKLVVNFESDKLKAVKGFRNVI IGPA >gi568815578f:37933948_38189872|GENSCAN_predicted_CDS_6|2355_bp ctgtgtgtggctcgcggtcaaggctacctggctgtgtcaggctgtatctatgtcctgggg gcgccctcgtccggccgccgtccctccctcgggctccggtcccctggtgccagccgccag tggtcgcacttggagggtctcgccgccagtggaaggagccaccgcccccgcccgaccatg gccgaggagctggtcttagagaggtgtgatctggagctggagaccaatggccgagaccac cacacggccgacctgtgccgggagaagctggtggtgcgacggggccagcccttctggctg accctgcactttgagggccgcaactacgaggccagtgtagacagtctcaccttcagtgtc gtgaccggcccagcccctagccaggaggccgggaccaaggcccgttttccactaagagat gctgtggaggagggtgactggacagccaccgtggtggaccagcaagactgcaccctctcg ctgcagctcaccaccccggccaacgcccccatcggcctgtatcgcctcagcctggaggcc tccactggctaccagggatccagctttgtgctgggccacttcattttgctcttcaacgcc tggtgcccagcggatgctgtgtacctggactcggaagaggagcggcaggagtatgtcctc acccagcagggctttatctaccagggctcggccaagttcatcaagaacataccttggaat tttgggcagtttgaagatgggatcctagacatctgcctgatccttctagatgtcaacccc aagttcctgaagaacgccggccgtgactgctcccgccgcagcagccccgtctacgtgggc cgggtggtgagtggcatggtcaactgcaacgatgaccagggtgtgctgctgggacgctgg gacaacaactacggggacggcgtcagccccatgtcctggatcggcagcgtggacatcctg cggcgctggaagaaccacggctgccagcgcgtcaagtatggccagtgctgggtcttcgcc gccgtggcctgcacagggccacgtgcatccgtgttcttgtacattgggaatgatgatgag tcctcagtggcatcactaatgcacaaagagatggaaccaaggcccagagacatgaaggga ctggtcccagtgctgaggtgcctgggcatccctacccgcgtcgtgaccaactacaactcg gcccatgaccagaacagcaaccttctcatcgagtacttccgcaatgagtttggggagatc cagggtgacaagagcgagatgatctggaacttccactgctgggtggagtcgtggatgacc aggccggacctgcagccggggtacgagggctggcaggccctggacccaacgccccaggag aagagcgaagggacgtactgctgtggcccagttccagttcgtgccatcaaggagggcgac ctgagcaccaagtacgatgcgccctttgtctttgcggaggtcaatgccgacgtggtagac tggatccagcaggacgatgggtctgtgcacaaatccatcaaccgttccctgatcgttggg ctgaagatcagcactaagagcgtgggccgagacgagcgggaggatatcacccacacctac aaatacccagaggggtcctcagaggagagggaggccttcacaagggcgaaccacctgaac aaactggccgagaaggaggagacagggatggccatgcggatccgtgtgggccagagcatg aacatgggcagtgactttgacgtctttgcccacatcaccaacaacaccgctgaggagtac gtctgccgcctcctgctctgtgcccgcaccgtcagctacaatgggatcttggggcccgag tgtggcaccaagtacctgctcaacctcaacctggagcctttctctgagaagagcgttcct ctttgcatcctctatgagaaataccgtgactgccttacggagtccaacctcatcaaggtg cgggccctcctcgtggagccagttatcaacagctacctgctggctgagagggacctctac ctggagaatccagaaatcaagatccggatccttggggagcccaagcagaaacgcaagctg gtggctgaggtgtccctgcagaacccgctccctgtggccctggaaggctgcaccttcact gtggagggggccggcctgactgaggagcagaagacggtggagatcccagaccccgtggag gcaggggaggaagttaaggtgagaatggacctgctgccgctccacatgggcctccacaag ctggtggtgaacttcgagagcgacaagctgaaggctgtgaagggcttccggaatgtcatc attggccccgcctaa